Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:22:00 (3050583): wrapper (7.7.26015): starting
19:22:00 (3050583): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 19:22:00] Arguments: --nthreads 3
[2025-10-12 19:22:00] Threads: 3
[2025-10-12 19:22:00] Checking for CVMFS
[2025-10-12 19:22:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:22:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:22:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:22:00] 2.9.2.0 1615862 4566 83208 151629 1 56 31521021 36864001 0 130560 0 3611286 99.991 158714 999 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 19:22:00] CVMFS is ok
[2025-10-12 19:22:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:22:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:22:00] Further information can be found at the LHC@home message board.
[2025-10-12 19:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:22:00] Checking for apptainer binary...
[2025-10-12 19:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:22:00] Running /usr/bin/apptainer --version
[2025-10-12 19:22:00] apptainer version 1.4.1-1.1
[2025-10-12 19:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:22:00] thA323
[2025-10-12 19:22:00] apptainer works
[2025-10-12 19:22:00] Set ATHENA_PROC_NUMBER=3
[2025-10-12 19:22:00] Set ATHENA_CORE_NUMBER=3
[2025-10-12 19:22:00] Starting ATLAS job with PandaID=6839591468
[2025-10-12 19:22:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:45:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:45:19] 2025-10-12 18:45:00,900 | INFO     | overall cleanup function is called
[2025-10-12 20:45:19] 2025-10-12 18:45:01,907 | INFO     | --- collectZombieJob: --- 10, [3060748]
[2025-10-12 20:45:19] 2025-10-12 18:45:01,907 | INFO     | zombie collector waiting for pid 3060748
[2025-10-12 20:45:19] 2025-10-12 18:45:01,907 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:45:19] 2025-10-12 18:45:01,907 | INFO     | collected zombie processes
[2025-10-12 20:45:19] 2025-10-12 18:45:01,907 | INFO     | will attempt to kill all subprocesses of pid=3060748
[2025-10-12 20:45:19] 2025-10-12 18:45:01,955 | INFO     | process IDs to be killed: [3060748] (in reverse order)
[2025-10-12 20:45:19] 2025-10-12 18:45:01,983 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:45:19] 2025-10-12 18:45:01,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:45:19] 2025-10-12 18:45:01,984 | INFO     | did not find any defunct processes belonging to 3060748
[2025-10-12 20:45:19] 2025-10-12 18:45:01,986 | INFO     | did not find any defunct processes belonging to 3060748
[2025-10-12 20:45:19] 2025-10-12 18:45:01,986 | INFO     | ready for new job
[2025-10-12 20:45:19] 2025-10-12 18:45:01,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:45:19] 2025-10-12 18:45:01,987 | INFO     | ***************************************
[2025-10-12 20:45:19] 2025-10-12 18:45:01,987 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:45:19] 2025-10-12 18:45:01,987 | INFO     | ***************************************
[2025-10-12 20:45:19] 2025-10-12 18:45:01,987 | INFO     | 
[2025-10-12 20:45:19] 2025-10-12 18:45:01,987 | INFO     | architecture information:
[2025-10-12 20:45:19] 2025-10-12 18:45:01,987 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:45:19] 2025-10-12 18:45:01,996 | INFO     | cat /etc/os-release:
[2025-10-12 20:45:19] NAME="CentOS Linux"
[2025-10-12 20:45:19] VERSION="7 (Core)"
[2025-10-12 20:45:19] ID="centos"
[2025-10-12 20:45:19] ID_LIKE="rhel fedora"
[2025-10-12 20:45:19] VERSION_ID="7"
[2025-10-12 20:45:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:45:19] ANSI_COLOR="0;31"
[2025-10-12 20:45:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:45:19] HOME_URL="https://www.centos.org/"
[2025-10-12 20:45:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:45:19] 
[2025-10-12 20:45:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:45:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:45:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:45:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:45:19] 
[2025-10-12 20:45:19] 2025-10-12 18:45:01,996 | INFO     | ***************************************
[2025-10-12 20:45:19] 2025-10-12 18:45:02,500 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:45:19] 2025-10-12 18:45:02,513 | INFO     | sufficient remaining disk space (273007247360 B)
[2025-10-12 20:45:19] 2025-10-12 18:45:02,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:45:19] 2025-10-12 18:45:02,513 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:45:19] 2025-10-12 18:45:02,513 | INFO     | update_server=False
[2025-10-12 20:45:19] 2025-10-12 18:45:02,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:45:19] 2025-10-12 18:45:02,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:45:19] 2025-10-12 18:45:02,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:45:19] 2025-10-12 18:45:02,608 | INFO     | aborting loop
[2025-10-12 20:45:19] 2025-10-12 18:45:03,075 | INFO     | all payload control threads have been joined
[2025-10-12 20:45:19] 2025-10-12 18:45:03,160 | INFO     | all data control threads have been joined
[2025-10-12 20:45:19] 2025-10-12 18:45:03,519 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:03,519 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:03,614 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:03,894 | INFO     | all job control threads have been joined
[2025-10-12 20:45:19] 2025-10-12 18:45:04,071 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,080 | INFO     | [payload] control thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,165 | INFO     | [data] control thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,361 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,520 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,526 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,559 | INFO     | [job] validate thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,624 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,689 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:04,899 | INFO     | [job] control thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:05,032 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:06,521 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:45:19] 2025-10-12 18:45:12,377 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:45:19] 2025-10-12 18:45:14,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474639955776)>', '<ExcThread(monitor, started 140474153170688)>']
[2025-10-12 20:45:19] 2025-10-12 18:45:14,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:45:19] 2025-10-12 18:45:14,574 | INFO     | [monitor] control thread has ended
[2025-10-12 20:45:19] 2025-10-12 18:45:19,386 | INFO     | all workflow threads have been joined
[2025-10-12 20:45:19] 2025-10-12 18:45:19,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:45:19] 2025-10-12 18:45:19,387 | INFO     | traces error code: 0
[2025-10-12 20:45:19] 2025-10-12 18:45:19,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:45:19] 2025-10-12 18:45:19,439 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:45:19] 2025-10-12 18:45:19,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:45:19] 2025-10-12 18:45:19,444 [wrapper] pilotpid: 3054310
[2025-10-12 20:45:19] 2025-10-12 18:45:19,447 [wrapper] Pilot exit status: 0
[2025-10-12 20:45:19] 2025-10-12 18:45:19,454 [wrapper] pandaids: 6839591468
[2025-10-12 20:45:19] 2025-10-12 18:45:19,473 [wrapper] cleanup supervisor_pilot 3072743 3054311
[2025-10-12 20:45:19] 2025-10-12 18:45:19,475 [wrapper] Test setup, not cleaning
[2025-10-12 20:45:19] 2025-10-12 18:45:19,478 [wrapper] apfmon messages muted
[2025-10-12 20:45:19] 2025-10-12 18:45:19,480 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:45:19] 2025-10-12 18:45:19,483 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:45:19]  *** Error codes and diagnostics ***
[2025-10-12 20:45:19]     "exeErrorCode": 0,
[2025-10-12 20:45:19]     "exeErrorDiag": "",
[2025-10-12 20:45:19]     "pilotErrorCode": 0,
[2025-10-12 20:45:19]     "pilotErrorDiag": "",
[2025-10-12 20:45:19]  *** Listing of results directory ***
[2025-10-12 20:45:19] total 416076
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:33 queuedata.json
[2025-10-12 20:45:19] -rwx------ 1 boinc boinc     36292 Oct 12 08:33 runpilot2-wrapper.sh
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:45:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:22 run_atlas
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:22 job.xml
[2025-10-12 20:45:19] -rw-r--r-- 2 boinc boinc 220509362 Oct 12 19:22 EVNT.46676267._004512.pool.root.1
[2025-10-12 20:45:19] -rw-r--r-- 2 boinc boinc    569680 Oct 12 19:22 input.tar.gz
[2025-10-12 20:45:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:22 start_atlas.sh
[2025-10-12 20:45:19] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:22 shared
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:22 boinc_setup_complete
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc      6446 Oct 12 19:22 init_data.xml
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:22 boinc_lockfile
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc      2550 Oct 12 19:22 pandaJob.out
[2025-10-12 20:45:19] -rw------- 1 boinc boinc    975528 Oct 12 19:22 agis_schedconf.cvmfs.json
[2025-10-12 20:45:19] -rw------- 1 boinc boinc   1560580 Oct 12 19:22 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:45:19] drwx------ 5 boinc boinc      4096 Oct 12 19:22 pilot3
[2025-10-12 20:45:19] -rw------- 1 boinc boinc        95 Oct 12 20:44 pilot_heartbeat.json
[2025-10-12 20:45:19] -rw------- 1 boinc boinc 199686622 Oct 12 20:44 HITS.46676269._072732.pool.root.1
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:44 boinc_task_state.xml
[2025-10-12 20:45:19] -rw------- 1 boinc boinc      1014 Oct 12 20:44 memory_monitor_summary.json
[2025-10-12 20:45:19] -rw------- 1 boinc boinc    258403 Oct 12 20:44 log.46676269._072732.job.log.tgz.1
[2025-10-12 20:45:19] -rw------- 1 boinc boinc      7751 Oct 12 20:45 heartbeat.json
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:45 boinc_mmap_file
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:45 wrapper_checkpoint.txt
[2025-10-12 20:45:19] -rw------- 1 boinc boinc      4556 Oct 12 20:45 pilotlog.txt
[2025-10-12 20:45:19] -rw------- 1 boinc boinc    728819 Oct 12 20:45 log.46676269._072732.job.log.1
[2025-10-12 20:45:19] -rw------- 1 boinc boinc       357 Oct 12 20:45 output.list
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:45 runtime_log
[2025-10-12 20:45:19] -rw------- 1 boinc boinc   1003520 Oct 12 20:45 result.tar.gz
[2025-10-12 20:45:19] -rw------- 1 boinc boinc       658 Oct 12 20:45 vl9NDmDp4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQNTMDmaCprnn.diag
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc      8777 Oct 12 20:45 runtime_log.err
[2025-10-12 20:45:19] -rw-r--r-- 1 boinc boinc     10629 Oct 12 20:45 stderr.txt
[2025-10-12 20:45:19] HITS file was successfully produced:
[2025-10-12 20:45:19] -rw------- 1 boinc boinc 199686622 Oct 12 20:44 shared/HITS.pool.root.1
[2025-10-12 20:45:19]  *** Contents of shared directory: ***
[2025-10-12 20:45:19] total 411916
[2025-10-12 20:45:19] -rw-r--r-- 2 boinc boinc 220509362 Oct 12 19:22 ATLAS.root_0
[2025-10-12 20:45:19] -rw-r--r-- 2 boinc boinc    569680 Oct 12 19:22 input.tar.gz
[2025-10-12 20:45:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:22 start_atlas.sh
[2025-10-12 20:45:19] -rw------- 1 boinc boinc 199686622 Oct 12 20:44 HITS.pool.root.1
[2025-10-12 20:45:19] -rw------- 1 boinc boinc   1003520 Oct 12 20:45 result.tar.gz
20:45:20 (3050583): run_atlas exited; CPU time 14263.078430
20:45:20 (3050583): called boinc_finish(0)

</stderr_txt>
]]>

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