Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
02:42:53 (4124669): wrapper (7.7.26015): starting
02:42:53 (4124669): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 02:42:53] Arguments: --nthreads 4
[2025-10-12 02:42:53] Threads: 4
[2025-10-12 02:42:53] Checking for CVMFS
[2025-10-12 02:42:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:42:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:42:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:42:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:42:54] 2.11.3.0 1528564 4203 67732 151613 2 188 2778984 4096001 5502 130560 0 18372027 99.998 140725 678 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 02:42:54] CVMFS is ok
[2025-10-12 02:42:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:42:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 02:42:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 02:42:54] Further information can be found at the LHC@home message board.
[2025-10-12 02:42:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:42:54] Checking for apptainer binary...
[2025-10-12 02:42:54] apptainer is not installed, using version from CVMFS
[2025-10-12 02:42:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:42:54] officedc-System-Product-Name
[2025-10-12 02:42:54] apptainer works
[2025-10-12 02:42:54] Set ATHENA_PROC_NUMBER=4
[2025-10-12 02:42:54] Set ATHENA_CORE_NUMBER=4
[2025-10-12 02:42:54] Starting ATLAS job with PandaID=6839162229
[2025-10-12 02:42:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 04:39:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 04:39:22] 2025-10-12 10:38:53,636 | INFO     | time since job start (6949s) is within the limit (172800.0s)
[2025-10-12 04:39:22] 2025-10-12 10:38:54,476 | INFO     | monitor loop #520: job 0:6839162229 is in state 'finished'
[2025-10-12 04:39:22] 2025-10-12 10:38:54,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,579 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 04:39:22] 2025-10-12 10:38:55,583 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3943.7489062500003
[2025-10-12 04:39:22] 2025-10-12 10:38:55,587 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6839162229/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,587 | INFO     | extracted standard info from prmon json
[2025-10-12 04:39:22] 2025-10-12 10:38:55,587 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 04:39:22] 2025-10-12 10:38:55,588 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 04:39:22] 2025-10-12 10:38:55,588 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 04:39:22] 2025-10-12 10:38:55,588 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | fitting pss+swap vs Time
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | sum of square deviations: 459366752.5
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | sum of deviations: 2296156144.0000014
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | mean x: 1760262053.5
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | mean y: 2324103.3333333335
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | -- intersect: -8796389576.307825
[2025-10-12 04:39:22] 2025-10-12 10:38:55,590 | INFO     | intersect: -8796389576.307825
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | chi2: 1.3794833069290235
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | sum of square deviations: 401533110.0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | sum of deviations: 2263084810.999999
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | mean x: 1760261901.0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | mean y: 2324016.770642202
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | -- intersect: -9918705836.869781
[2025-10-12 04:39:22] 2025-10-12 10:38:55,591 | INFO     | intersect: -9918705836.869781
[2025-10-12 04:39:22] 2025-10-12 10:38:55,592 | INFO     | chi2: 1.3808410759279992
[2025-10-12 04:39:22] 2025-10-12 10:38:55,592 | INFO     | current chi2=1.3808410759279992 (change=-0.0984259100603615 %)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,592 | INFO     | right removable region: 108
[2025-10-12 04:39:22] 2025-10-12 10:38:55,592 | INFO     | sum of square deviations: 401533110.0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,593 | INFO     | sum of deviations: -10300915730.999998
[2025-10-12 04:39:22] 2025-10-12 10:38:55,593 | INFO     | mean x: 1760262206.0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,593 | INFO     | mean y: 2356374.5871559633
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | -- intersect: 45160058683.29629
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | intersect: 45160058683.29629
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | chi2: 0.053783868449161276
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | current chi2=0.053783868449161276 (change=96.1011584425118 %)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | sum of square deviations: 348769330.0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | sum of deviations: -8183389150.5
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | mean x: 1760262358.5
[2025-10-12 04:39:22] 2025-10-12 10:38:55,594 | INFO     | mean y: 2350241.355769231
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | -- intersect: 41304467851.81894
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | intersect: 41304467851.81894
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | chi2: 0.05155305655188585
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | current chi2=0.05155305655188585 (change=4.147734184245378 %)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | left removable region: 20
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | sum of square deviations: 211285822.0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | sum of deviations: -3068569925.0000005
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | mean x: 1760262480.5
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | mean y: 2334025.9545454546
[2025-10-12 04:39:22] 2025-10-12 10:38:55,595 | INFO     | -- intersect: 25567175323.106037
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | intersect: 25567175323.106037
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | chi2: 0.029709523248339163
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | -- intersect: 25567175323.106037
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | current memory leak: -14.52 B/s (using 88 data points, chi2=0.03)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | could have reported an average CPU frequency of 3991 MHz (7 samples)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | ..............................
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | . Timing measurements:
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | . get job = 0 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | . initial setup = 2 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | . payload setup = 4 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | . stage-in = 0 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,596 | INFO     | . payload execution = 6921 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,597 | INFO     | . stage-out = 0 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,597 | INFO     | . log creation = 0 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,597 | INFO     | ..............................
[2025-10-12 04:39:22] 2025-10-12 10:38:55,642 | INFO     | time since job start (6951s) is within the limit (172800.0s)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | 
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | job summary report
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | --------------------------------------------------
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | PanDA job id: 6839162229
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | task id: 46676269
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | errors: (none)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | pilot state: finished 
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | transexitcode: 0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | exeerrorcode: 0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,664 | INFO     | exeerrordiag: 
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | exitcode: 0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | exitmsg: OK
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | cpuconsumptiontime: 26681 s
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | nevents: 400
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | neventsw: 0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | pid: 4135159
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | pgrp: 4135159
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | corecount: 4
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | event service: False
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | sizes: {0: 2348807, 4: 2349069, 11: 2349097, 6929: 2376443, 6930: 2385443, 6933: 2385499, 6937: 2385821}
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | --------------------------------------------------
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | 
[2025-10-12 04:39:22] 2025-10-12 10:38:55,665 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/0
[2025-10-12 04:39:22] 2025-10-12 10:38:55,690 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,691 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,692 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 04:39:22] 2025-10-12 10:38:55,692 | INFO     | job 6839162229 has completed (purged errors)
[2025-10-12 04:39:22] 2025-10-12 10:38:55,692 | INFO     | overall cleanup function is called
[2025-10-12 04:39:22] 2025-10-12 10:38:56,698 | INFO     | --- collectZombieJob: --- 10, [4135159]
[2025-10-12 04:39:22] 2025-10-12 10:38:56,698 | INFO     | zombie collector waiting for pid 4135159
[2025-10-12 04:39:22] 2025-10-12 10:38:56,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 04:39:22] 2025-10-12 10:38:56,699 | INFO     | collected zombie processes
[2025-10-12 04:39:22] 2025-10-12 10:38:56,699 | INFO     | will attempt to kill all subprocesses of pid=4135159
[2025-10-12 04:39:22] 2025-10-12 10:38:56,830 | INFO     | process IDs to be killed: [4135159] (in reverse order)
[2025-10-12 04:39:22] 2025-10-12 10:38:56,894 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 04:39:22] 2025-10-12 10:38:56,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 04:39:22] 2025-10-12 10:38:56,899 | INFO     | did not find any defunct processes belonging to 4135159
[2025-10-12 04:39:22] 2025-10-12 10:38:56,902 | INFO     | did not find any defunct processes belonging to 4135159
[2025-10-12 04:39:22] 2025-10-12 10:38:56,902 | INFO     | ready for new job
[2025-10-12 04:39:22] 2025-10-12 10:38:56,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 04:39:22] 2025-10-12 10:38:56,904 | INFO     | ***************************************
[2025-10-12 04:39:22] 2025-10-12 10:38:56,904 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 04:39:22] 2025-10-12 10:38:56,904 | INFO     | ***************************************
[2025-10-12 04:39:22] 2025-10-12 10:38:56,904 | INFO     | 
[2025-10-12 04:39:22] 2025-10-12 10:38:56,905 | INFO     | architecture information:
[2025-10-12 04:39:22] 2025-10-12 10:38:56,905 | INFO     | executing command: cat /etc/os-release
[2025-10-12 04:39:22] 2025-10-12 10:38:56,918 | INFO     | cat /etc/os-release:
[2025-10-12 04:39:22] NAME="CentOS Linux"
[2025-10-12 04:39:22] VERSION="7 (Core)"
[2025-10-12 04:39:22] ID="centos"
[2025-10-12 04:39:22] ID_LIKE="rhel fedora"
[2025-10-12 04:39:22] VERSION_ID="7"
[2025-10-12 04:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 04:39:22] ANSI_COLOR="0;31"
[2025-10-12 04:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 04:39:22] HOME_URL="https://www.centos.org/"
[2025-10-12 04:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 04:39:22] 
[2025-10-12 04:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 04:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 04:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 04:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 04:39:22] 
[2025-10-12 04:39:22] 2025-10-12 10:38:56,918 | INFO     | ***************************************
[2025-10-12 04:39:22] 2025-10-12 10:38:57,420 | INFO     | executing command: df -mP /var/lib/boinc3/slots/0
[2025-10-12 04:39:22] 2025-10-12 10:38:57,439 | INFO     | sufficient remaining disk space (376845631488 B)
[2025-10-12 04:39:22] 2025-10-12 10:38:57,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 04:39:22] 2025-10-12 10:38:57,439 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 04:39:22] 2025-10-12 10:38:57,439 | INFO     | update_server=False
[2025-10-12 04:39:22] 2025-10-12 10:38:57,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 04:39:22] 2025-10-12 10:38:57,439 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 04:39:22] 2025-10-12 10:38:57,440 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 04:39:22] 2025-10-12 10:38:57,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 04:39:22] 2025-10-12 10:38:57,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 04:39:22] 2025-10-12 10:38:57,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:39:22] 2025-10-12 10:38:57,440 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 04:39:22] 2025-10-12 10:38:57,984 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:39:22] 2025-10-12 10:38:57,985 | INFO     | aborting loop
[2025-10-12 04:39:22] 2025-10-12 10:38:58,191 | INFO     | all data control threads have been joined
[2025-10-12 04:39:22] 2025-10-12 10:38:58,444 | INFO     | [job] retrieve thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:58,445 | INFO     | [job] queue monitor thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:58,599 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:58,604 | INFO     | all payload control threads have been joined
[2025-10-12 04:39:22] 2025-10-12 10:38:58,654 | INFO     | all job control threads have been joined
[2025-10-12 04:39:22] 2025-10-12 10:38:58,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 04:39:22] 2025-10-12 10:38:58,789 | INFO     | [payload] failed_post thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:58,904 | INFO     | [job] validate thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:58,917 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:58,989 | INFO     | [job] job monitor thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,165 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,196 | INFO     | [data] control thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,369 | INFO     | [payload] validate_post thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,432 | INFO     | [data] copytool_in thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,609 | INFO     | [payload] control thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:38:59,659 | INFO     | [job] control thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:39:00,765 | INFO     | [data] copytool_out thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:39:01,446 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 04:39:22] 2025-10-12 10:39:15,197 | INFO     | [monitor] cgroup control has ended
[2025-10-12 04:39:22] 2025-10-12 10:39:16,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129947823646528)>', '<ExcThread(monitor, started 129947542718208)>']
[2025-10-12 04:39:22] 2025-10-12 10:39:17,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 04:39:22] 2025-10-12 10:39:17,534 | INFO     | [monitor] control thread has ended
[2025-10-12 04:39:22] 2025-10-12 10:39:21,925 | INFO     | all workflow threads have been joined
[2025-10-12 04:39:22] 2025-10-12 10:39:21,925 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 04:39:22] 2025-10-12 10:39:21,926 | INFO     | traces error code: 0
[2025-10-12 04:39:22] 2025-10-12 10:39:21,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 04:39:22] 2025-10-12 10:39:22,008 [wrapper] ==== pilot stdout END ====
[2025-10-12 04:39:22] 2025-10-12 10:39:22,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 04:39:22] 2025-10-12 10:39:22,013 [wrapper] pilotpid: 4128504
[2025-10-12 04:39:22] 2025-10-12 10:39:22,015 [wrapper] Pilot exit status: 0
[2025-10-12 04:39:22] 2025-10-12 10:39:22,024 [wrapper] pandaids: 6839162229
[2025-10-12 04:39:22] 2025-10-12 10:39:22,062 [wrapper] cleanup supervisor_pilot   88899 4128505
[2025-10-12 04:39:22] 2025-10-12 10:39:22,064 [wrapper] Test setup, not cleaning
[2025-10-12 04:39:22] 2025-10-12 10:39:22,067 [wrapper] apfmon messages muted
[2025-10-12 04:39:22] 2025-10-12 10:39:22,069 [wrapper] ==== wrapper stdout END ====
[2025-10-12 04:39:22] 2025-10-12 10:39:22,071 [wrapper] ==== wrapper stderr END ====
[2025-10-12 04:39:22]  *** Error codes and diagnostics ***
[2025-10-12 04:39:22]     "exeErrorCode": 0,
[2025-10-12 04:39:22]     "exeErrorDiag": "",
[2025-10-12 04:39:22]     "pilotErrorCode": 0,
[2025-10-12 04:39:22]     "pilotErrorDiag": "",
[2025-10-12 04:39:22]  *** Listing of results directory ***
[2025-10-12 04:39:22] total 418656
[2025-10-12 04:39:22] -rw-r--r-- 1 boinc boinc    557409 Oct 11 17:09 pilot3.tar.gz
[2025-10-12 04:39:22] -rw-r--r-- 1 boinc boinc      5112 Oct 11 17:12 queuedata.json
[2025-10-12 04:39:22] -rwx------ 1 boinc boinc     36292 Oct 11 17:12 runpilot2-wrapper.sh
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc       100 Oct 12 02:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 04:39:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 02:42 run_atlas
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc       105 Oct 12 02:42 job.xml
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc      9753 Oct 12 02:42 init_data.xml
[2025-10-12 04:39:22] -rw-r--r-- 2 boinc boinc 223779744 Oct 12 02:42 EVNT.46676267._002698.pool.root.1
[2025-10-12 04:39:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 02:42 start_atlas.sh
[2025-10-12 04:39:22] drwxrwx--x 2 boinc boinc      4096 Oct 12 02:42 shared
[2025-10-12 04:39:22] -rw-r--r-- 2 boinc boinc    569679 Oct 12 02:42 input.tar.gz
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc         0 Oct 12 02:42 boinc_lockfile
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc      2549 Oct 12 02:42 pandaJob.out
[2025-10-12 04:39:22] -rw------- 1 boinc boinc    975520 Oct 12 02:43 agis_schedconf.cvmfs.json
[2025-10-12 04:39:22] -rw------- 1 boinc boinc   1560580 Oct 12 02:43 agis_ddmendpoints.agis.ALL.json
[2025-10-12 04:39:22] drwx------ 5 boinc boinc      4096 Oct 12 02:43 pilot3
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc       529 Oct 12 04:38 boinc_task_state.xml
[2025-10-12 04:39:22] -rw------- 1 boinc boinc 198395152 Oct 12 04:38 HITS.46676269._066836.pool.root.1
[2025-10-12 04:39:22] -rw------- 1 boinc boinc        95 Oct 12 04:38 pilot_heartbeat.json
[2025-10-12 04:39:22] -rw------- 1 boinc boinc      1038 Oct 12 04:38 memory_monitor_summary.json
[2025-10-12 04:39:22] -rw------- 1 boinc boinc    301229 Oct 12 04:38 log.46676269._066836.job.log.tgz.1
[2025-10-12 04:39:22] -rw------- 1 boinc boinc      7781 Oct 12 04:38 heartbeat.json
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc      8192 Oct 12 04:39 boinc_mmap_file
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc        27 Oct 12 04:39 wrapper_checkpoint.txt
[2025-10-12 04:39:22] -rw------- 1 boinc boinc      4554 Oct 12 04:39 pilotlog.txt
[2025-10-12 04:39:22] -rw------- 1 boinc boinc   1010441 Oct 12 04:39 log.46676269._066836.job.log.1
[2025-10-12 04:39:22] -rw------- 1 boinc boinc       357 Oct 12 04:39 output.list
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc       620 Oct 12 04:39 runtime_log
[2025-10-12 04:39:22] -rw------- 1 boinc boinc   1331200 Oct 12 04:39 result.tar.gz
[2025-10-12 04:39:22] -rw------- 1 boinc boinc       658 Oct 12 04:39 S8OKDmNwxR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmklSMDmUfcGym.diag
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc      8755 Oct 12 04:39 runtime_log.err
[2025-10-12 04:39:22] -rw-rw-r-- 1 boinc boinc     21172 Oct 12 04:39 stderr.txt
[2025-10-12 04:39:22] HITS file was successfully produced:
[2025-10-12 04:39:22] -rw------- 1 boinc boinc 198395152 Oct 12 04:38 shared/HITS.pool.root.1
[2025-10-12 04:39:22]  *** Contents of shared directory: ***
[2025-10-12 04:39:22] total 414164
[2025-10-12 04:39:22] -rw-r--r-- 2 boinc boinc 223779744 Oct 12 02:42 ATLAS.root_0
[2025-10-12 04:39:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 02:42 start_atlas.sh
[2025-10-12 04:39:22] -rw-r--r-- 2 boinc boinc    569679 Oct 12 02:42 input.tar.gz
[2025-10-12 04:39:22] -rw------- 1 boinc boinc 198395152 Oct 12 04:38 HITS.pool.root.1
[2025-10-12 04:39:22] -rw------- 1 boinc boinc   1331200 Oct 12 04:39 result.tar.gz
04:39:23 (4124669): run_atlas exited; CPU time 26744.636448
04:39:23 (4124669): called boinc_finish(0)

</stderr_txt>
]]>

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