Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:22:40 (2656854): wrapper (7.7.26015): starting
01:22:40 (2656854): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 01:22:40] Arguments: --nthreads 3
[2025-10-13 01:22:40] Threads: 3
[2025-10-13 01:22:40] Checking for CVMFS
[2025-10-13 01:22:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:22:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:22:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:22:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:22:40] 2.9.2.0 1182477 5081 83940 151641 2 56 3814920 36864001 0 130560 0 3881740 99.991 177234 954 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 01:22:40] CVMFS is ok
[2025-10-13 01:22:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:22:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:22:40] Further information can be found at the LHC@home message board.
[2025-10-13 01:22:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:22:40] Checking for apptainer binary...
[2025-10-13 01:22:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:22:40] Running /usr/bin/apptainer --version
[2025-10-13 01:22:40] apptainer version 1.4.1-1.1
[2025-10-13 01:22:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:22:40] thA332
[2025-10-13 01:22:40] apptainer works
[2025-10-13 01:22:40] Set ATHENA_PROC_NUMBER=3
[2025-10-13 01:22:40] Set ATHENA_CORE_NUMBER=3
[2025-10-13 01:22:40] Starting ATLAS job with PandaID=6839591139
[2025-10-13 01:22:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:49:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:49:04] 2025-10-13 00:48:31,982 | INFO     | overall cleanup function is called
[2025-10-13 02:49:04] 2025-10-13 00:48:32,988 | INFO     | --- collectZombieJob: --- 10, [2667008]
[2025-10-13 02:49:04] 2025-10-13 00:48:32,988 | INFO     | zombie collector waiting for pid 2667008
[2025-10-13 02:49:04] 2025-10-13 00:48:32,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:49:04] 2025-10-13 00:48:32,988 | INFO     | collected zombie processes
[2025-10-13 02:49:04] 2025-10-13 00:48:32,988 | INFO     | will attempt to kill all subprocesses of pid=2667008
[2025-10-13 02:49:04] 2025-10-13 00:48:33,032 | INFO     | process IDs to be killed: [2667008] (in reverse order)
[2025-10-13 02:49:04] 2025-10-13 00:48:33,055 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:49:04] 2025-10-13 00:48:33,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:49:04] 2025-10-13 00:48:33,057 | INFO     | did not find any defunct processes belonging to 2667008
[2025-10-13 02:49:04] 2025-10-13 00:48:33,058 | INFO     | did not find any defunct processes belonging to 2667008
[2025-10-13 02:49:04] 2025-10-13 00:48:33,058 | INFO     | ready for new job
[2025-10-13 02:49:04] 2025-10-13 00:48:33,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:49:04] 2025-10-13 00:48:33,059 | INFO     | ***************************************
[2025-10-13 02:49:04] 2025-10-13 00:48:33,059 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:49:04] 2025-10-13 00:48:33,059 | INFO     | ***************************************
[2025-10-13 02:49:04] 2025-10-13 00:48:33,059 | INFO     | 
[2025-10-13 02:49:04] 2025-10-13 00:48:33,059 | INFO     | architecture information:
[2025-10-13 02:49:04] 2025-10-13 00:48:33,059 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:49:04] 2025-10-13 00:48:33,068 | INFO     | cat /etc/os-release:
[2025-10-13 02:49:04] NAME="CentOS Linux"
[2025-10-13 02:49:04] VERSION="7 (Core)"
[2025-10-13 02:49:04] ID="centos"
[2025-10-13 02:49:04] ID_LIKE="rhel fedora"
[2025-10-13 02:49:04] VERSION_ID="7"
[2025-10-13 02:49:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:49:04] ANSI_COLOR="0;31"
[2025-10-13 02:49:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:49:04] HOME_URL="https://www.centos.org/"
[2025-10-13 02:49:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:49:04] 
[2025-10-13 02:49:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:49:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:49:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:49:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:49:04] 
[2025-10-13 02:49:04] 2025-10-13 00:48:33,069 | INFO     | ***************************************
[2025-10-13 02:49:04] 2025-10-13 00:48:33,570 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:49:04] 2025-10-13 00:48:33,583 | INFO     | sufficient remaining disk space (255674286080 B)
[2025-10-13 02:49:04] 2025-10-13 00:48:33,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:49:04] 2025-10-13 00:48:33,583 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:49:04] 2025-10-13 00:48:33,583 | INFO     | update_server=False
[2025-10-13 02:49:04] 2025-10-13 00:48:33,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:49:04] 2025-10-13 00:48:33,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:49:04] 2025-10-13 00:48:33,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:49:04] 2025-10-13 00:48:33,753 | INFO     | all payload control threads have been joined
[2025-10-13 02:49:04] 2025-10-13 00:48:34,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:49:04] 2025-10-13 00:48:34,239 | INFO     | aborting loop
[2025-10-13 02:49:04] 2025-10-13 00:48:34,407 | INFO     | all data control threads have been joined
[2025-10-13 02:49:04] 2025-10-13 00:48:34,589 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:34,589 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:34,759 | INFO     | [payload] control thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:34,771 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:34,943 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,100 | INFO     | all job control threads have been joined
[2025-10-13 02:49:04] 2025-10-13 00:48:35,245 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,288 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,302 | INFO     | [job] validate thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,379 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,413 | INFO     | [data] control thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,423 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,675 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:35,976 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:36,106 | INFO     | [job] control thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:36,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:49:04] 2025-10-13 00:48:40,718 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:44,501 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:49:04] 2025-10-13 00:48:45,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:49:04] 2025-10-13 00:48:52,369 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:49:04] 2025-10-13 00:48:53,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379375601472)>', '<ExcThread(monitor, started 140378497861376)>']
[2025-10-13 02:49:04] 2025-10-13 00:48:58,411 | INFO     | all workflow threads have been joined
[2025-10-13 02:49:04] 2025-10-13 00:48:58,411 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:49:04] 2025-10-13 00:48:58,412 | INFO     | traces error code: 0
[2025-10-13 02:49:04] 2025-10-13 00:48:58,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:49:04] 2025-10-13 00:49:04,151 | INFO     | PID=2660569 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:49:04] 2025-10-13 00:49:04,151 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:49:04] 2025-10-13 00:49:04,151 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:49:04] 2025-10-13 00:49:04,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:49:04] 2025-10-13 00:49:04,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:49:04] 2025-10-13 00:49:04,151 | INFO     | [monitor] control thread has ended
[2025-10-13 02:49:04] 2025-10-13 00:49:04,198 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:49:04] 2025-10-13 00:49:04,200 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:49:04] 2025-10-13 00:49:04,202 [wrapper] pilotpid: 2660569
[2025-10-13 02:49:04] 2025-10-13 00:49:04,205 [wrapper] Pilot exit status: 0
[2025-10-13 02:49:04] 2025-10-13 00:49:04,212 [wrapper] pandaids: 6839591139
[2025-10-13 02:49:04] 2025-10-13 00:49:04,228 [wrapper] cleanup supervisor_pilot 2678893 2660570
[2025-10-13 02:49:04] 2025-10-13 00:49:04,230 [wrapper] Test setup, not cleaning
[2025-10-13 02:49:04] 2025-10-13 00:49:04,232 [wrapper] apfmon messages muted
[2025-10-13 02:49:04] 2025-10-13 00:49:04,235 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:49:04] 2025-10-13 00:49:04,237 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:49:04]  *** Error codes and diagnostics ***
[2025-10-13 02:49:04]     "exeErrorCode": 0,
[2025-10-13 02:49:04]     "exeErrorDiag": "",
[2025-10-13 02:49:04]     "pilotErrorCode": 0,
[2025-10-13 02:49:04]     "pilotErrorDiag": "",
[2025-10-13 02:49:04]  *** Listing of results directory ***
[2025-10-13 02:49:04] total 414220
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:28 queuedata.json
[2025-10-13 02:49:04] -rwx------ 1 boinc boinc     36292 Oct 12 08:29 runpilot2-wrapper.sh
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:49:04] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:22 run_atlas
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:22 job.xml
[2025-10-13 02:49:04] -rw-r--r-- 2 boinc boinc 223317814 Oct 13 01:22 EVNT.46676267._004506.pool.root.1
[2025-10-13 02:49:04] -rw-r--r-- 2 boinc boinc    569685 Oct 13 01:22 input.tar.gz
[2025-10-13 02:49:04] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:22 start_atlas.sh
[2025-10-13 02:49:04] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:22 shared
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:22 boinc_setup_complete
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc      6437 Oct 13 01:22 init_data.xml
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:22 boinc_lockfile
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc      2550 Oct 13 01:22 pandaJob.out
[2025-10-13 02:49:04] -rw------- 1 boinc boinc    975603 Oct 13 01:22 agis_schedconf.cvmfs.json
[2025-10-13 02:49:04] -rw------- 1 boinc boinc   1560580 Oct 13 01:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:49:04] drwx------ 5 boinc boinc      4096 Oct 13 01:22 pilot3
[2025-10-13 02:49:04] -rw------- 1 boinc boinc 194960237 Oct 13 02:48 HITS.46676269._072571.pool.root.1
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc       530 Oct 13 02:48 boinc_task_state.xml
[2025-10-13 02:49:04] -rw------- 1 boinc boinc        95 Oct 13 02:48 pilot_heartbeat.json
[2025-10-13 02:49:04] -rw------- 1 boinc boinc      1034 Oct 13 02:48 memory_monitor_summary.json
[2025-10-13 02:49:04] -rw------- 1 boinc boinc    245888 Oct 13 02:48 log.46676269._072571.job.log.tgz.1
[2025-10-13 02:49:04] -rw------- 1 boinc boinc      7760 Oct 13 02:48 heartbeat.json
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:48 boinc_mmap_file
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:48 wrapper_checkpoint.txt
[2025-10-13 02:49:04] -rw------- 1 boinc boinc       747 Oct 13 02:49 pilotlog.txt
[2025-10-13 02:49:04] -rw------- 1 boinc boinc    753570 Oct 13 02:49 log.46676269._072571.job.log.1
[2025-10-13 02:49:04] -rw------- 1 boinc boinc       357 Oct 13 02:49 output.list
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:49 runtime_log
[2025-10-13 02:49:04] -rw------- 1 boinc boinc   1013760 Oct 13 02:49 result.tar.gz
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc      8777 Oct 13 02:49 runtime_log.err
[2025-10-13 02:49:04] -rw------- 1 boinc boinc       658 Oct 13 02:49 PqJODm8k4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpqiNDmmlFSJn.diag
[2025-10-13 02:49:04] -rw-r--r-- 1 boinc boinc     10800 Oct 13 02:49 stderr.txt
[2025-10-13 02:49:04] HITS file was successfully produced:
[2025-10-13 02:49:04] -rw------- 1 boinc boinc 194960237 Oct 13 02:48 shared/HITS.pool.root.1
[2025-10-13 02:49:04]  *** Contents of shared directory: ***
[2025-10-13 02:49:04] total 410052
[2025-10-13 02:49:04] -rw-r--r-- 2 boinc boinc 223317814 Oct 13 01:22 ATLAS.root_0
[2025-10-13 02:49:04] -rw-r--r-- 2 boinc boinc    569685 Oct 13 01:22 input.tar.gz
[2025-10-13 02:49:04] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:22 start_atlas.sh
[2025-10-13 02:49:04] -rw------- 1 boinc boinc 194960237 Oct 13 02:48 HITS.pool.root.1
[2025-10-13 02:49:04] -rw------- 1 boinc boinc   1013760 Oct 13 02:49 result.tar.gz
02:49:05 (2656854): run_atlas exited; CPU time 14681.743011
02:49:05 (2656854): called boinc_finish(0)

</stderr_txt>
]]>

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