Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:01:47 (3120551): wrapper (7.7.26015): starting
19:01:47 (3120551): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 19:01:47] Arguments: --nthreads 3
[2025-10-12 19:01:47] Threads: 3
[2025-10-12 19:01:47] Checking for CVMFS
[2025-10-12 19:01:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:01:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:01:47] 2.9.2.0 1692675 4647 87956 151627 0 57 29477915 36864000 0 130560 0 3741554 99.991 157704 963 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 19:01:47] CVMFS is ok
[2025-10-12 19:01:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:01:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:01:47] Further information can be found at the LHC@home message board.
[2025-10-12 19:01:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:01:47] Checking for apptainer binary...
[2025-10-12 19:01:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:01:47] Running /usr/bin/apptainer --version
[2025-10-12 19:01:47] apptainer version 1.4.1-1.1
[2025-10-12 19:01:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:01:47] thA337a
[2025-10-12 19:01:47] apptainer works
[2025-10-12 19:01:48] Set ATHENA_PROC_NUMBER=3
[2025-10-12 19:01:48] Set ATHENA_CORE_NUMBER=3
[2025-10-12 19:01:48] Starting ATLAS job with PandaID=6839319303
[2025-10-12 19:01:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:21:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:21:07] 2025-10-12 18:20:35,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:21:07] 2025-10-12 18:20:35,933 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:21:07] 2025-10-12 18:20:35,933 | INFO     | job 6839319303 has completed (purged errors)
[2025-10-12 20:21:07] 2025-10-12 18:20:35,933 | INFO     | overall cleanup function is called
[2025-10-12 20:21:07] 2025-10-12 18:20:36,331 | WARNING  | process 3130705 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 20:21:07] 2025-10-12 18:20:36,361 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:21:07] 2025-10-12 18:20:36,398 | INFO     | number of running child processes to parent process 3130705: 1
[2025-10-12 20:21:07] 2025-10-12 18:20:36,398 | INFO     | maximum number of monitored processes: 6
[2025-10-12 20:21:07] 2025-10-12 18:20:36,398 | INFO     | aborting job monitoring since job object (job id=6839319303) has expired
[2025-10-12 20:21:07] 2025-10-12 18:20:36,939 | INFO     | --- collectZombieJob: --- 10, [3130705]
[2025-10-12 20:21:07] 2025-10-12 18:20:36,940 | INFO     | zombie collector waiting for pid 3130705
[2025-10-12 20:21:07] 2025-10-12 18:20:36,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:21:07] 2025-10-12 18:20:36,940 | INFO     | collected zombie processes
[2025-10-12 20:21:07] 2025-10-12 18:20:36,940 | INFO     | will attempt to kill all subprocesses of pid=3130705
[2025-10-12 20:21:07] 2025-10-12 18:20:36,982 | INFO     | process IDs to be killed: [3130705] (in reverse order)
[2025-10-12 20:21:07] 2025-10-12 18:20:37,007 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:21:07] 2025-10-12 18:20:37,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:21:07] 2025-10-12 18:20:37,009 | INFO     | did not find any defunct processes belonging to 3130705
[2025-10-12 20:21:07] 2025-10-12 18:20:37,010 | INFO     | did not find any defunct processes belonging to 3130705
[2025-10-12 20:21:07] 2025-10-12 18:20:37,010 | INFO     | ready for new job
[2025-10-12 20:21:07] 2025-10-12 18:20:37,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:21:07] 2025-10-12 18:20:37,011 | INFO     | ***************************************
[2025-10-12 20:21:07] 2025-10-12 18:20:37,011 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:21:07] 2025-10-12 18:20:37,011 | INFO     | ***************************************
[2025-10-12 20:21:07] 2025-10-12 18:20:37,011 | INFO     | 
[2025-10-12 20:21:07] 2025-10-12 18:20:37,011 | INFO     | architecture information:
[2025-10-12 20:21:07] 2025-10-12 18:20:37,011 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:21:07] 2025-10-12 18:20:37,020 | INFO     | cat /etc/os-release:
[2025-10-12 20:21:07] NAME="CentOS Linux"
[2025-10-12 20:21:07] VERSION="7 (Core)"
[2025-10-12 20:21:07] ID="centos"
[2025-10-12 20:21:07] ID_LIKE="rhel fedora"
[2025-10-12 20:21:07] VERSION_ID="7"
[2025-10-12 20:21:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:21:07] ANSI_COLOR="0;31"
[2025-10-12 20:21:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:21:07] HOME_URL="https://www.centos.org/"
[2025-10-12 20:21:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:21:07] 
[2025-10-12 20:21:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:21:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:21:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:21:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:21:07] 
[2025-10-12 20:21:07] 2025-10-12 18:20:37,020 | INFO     | ***************************************
[2025-10-12 20:21:07] 2025-10-12 18:20:37,523 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | INFO     | sufficient remaining disk space (375424811008 B)
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | INFO     | update_server=False
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | INFO     | aborting loop
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:21:07] 2025-10-12 18:20:37,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:21:07] 2025-10-12 18:20:38,058 | INFO     | all job control threads have been joined
[2025-10-12 20:21:07] 2025-10-12 18:20:38,159 | INFO     | all data control threads have been joined
[2025-10-12 20:21:07] 2025-10-12 18:20:38,538 | INFO     | all payload control threads have been joined
[2025-10-12 20:21:07] 2025-10-12 18:20:38,543 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:38,543 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:38,543 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:38,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:21:07] 2025-10-12 18:20:38,867 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:38,958 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,064 | INFO     | [job] control thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,162 | INFO     | [data] control thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,293 | INFO     | [job] validate thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,320 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,354 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,391 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,544 | INFO     | [payload] control thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:39,957 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:40,686 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:41,544 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:48,080 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:21:07] 2025-10-12 18:20:49,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:21:07] 2025-10-12 18:20:59,474 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:21:07] 2025-10-12 18:21:01,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209084200768)>', '<ExcThread(monitor, started 140207999416064)>']
[2025-10-12 20:21:07] 2025-10-12 18:21:06,480 | INFO     | all workflow threads have been joined
[2025-10-12 20:21:07] 2025-10-12 18:21:06,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:21:07] 2025-10-12 18:21:06,481 | INFO     | traces error code: 0
[2025-10-12 20:21:07] 2025-10-12 18:21:06,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:21:07] 2025-10-12 18:21:07,260 | INFO     | PID=3124268 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:21:07] 2025-10-12 18:21:07,260 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:21:07] 2025-10-12 18:21:07,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:21:07] 2025-10-12 18:21:07,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:21:07] 2025-10-12 18:21:07,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:21:07] 2025-10-12 18:21:07,260 | INFO     | [monitor] control thread has ended
[2025-10-12 20:21:07] 2025-10-12 18:21:07,307 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:21:07] 2025-10-12 18:21:07,309 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:21:07] 2025-10-12 18:21:07,312 [wrapper] pilotpid: 3124268
[2025-10-12 20:21:07] 2025-10-12 18:21:07,314 [wrapper] Pilot exit status: 0
[2025-10-12 20:21:07] 2025-10-12 18:21:07,322 [wrapper] pandaids: 6839319303
[2025-10-12 20:21:07] 2025-10-12 18:21:07,338 [wrapper] cleanup supervisor_pilot 3142814 3124269
[2025-10-12 20:21:07] 2025-10-12 18:21:07,341 [wrapper] Test setup, not cleaning
[2025-10-12 20:21:07] 2025-10-12 18:21:07,343 [wrapper] apfmon messages muted
[2025-10-12 20:21:07] 2025-10-12 18:21:07,346 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:21:07] 2025-10-12 18:21:07,348 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:21:07]  *** Error codes and diagnostics ***
[2025-10-12 20:21:07]     "exeErrorCode": 0,
[2025-10-12 20:21:07]     "exeErrorDiag": "",
[2025-10-12 20:21:07]     "pilotErrorCode": 0,
[2025-10-12 20:21:07]     "pilotErrorDiag": "",
[2025-10-12 20:21:07]  *** Listing of results directory ***
[2025-10-12 20:21:07] total 408064
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-12 20:21:07] -rwx------ 1 boinc boinc     36292 Oct 12 05:11 runpilot2-wrapper.sh
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:11 queuedata.json
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:21:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:01 run_atlas
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:01 job.xml
[2025-10-12 20:21:07] -rw-r--r-- 2 boinc boinc 221990156 Oct 12 19:01 EVNT.46676267._003214.pool.root.1
[2025-10-12 20:21:07] -rw-r--r-- 2 boinc boinc    569675 Oct 12 19:01 input.tar.gz
[2025-10-12 20:21:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:01 start_atlas.sh
[2025-10-12 20:21:07] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:01 shared
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:01 boinc_setup_complete
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc      6447 Oct 12 19:01 init_data.xml
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:01 boinc_lockfile
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc      2550 Oct 12 19:01 pandaJob.out
[2025-10-12 20:21:07] -rw------- 1 boinc boinc    975528 Oct 12 19:01 agis_schedconf.cvmfs.json
[2025-10-12 20:21:07] -rw------- 1 boinc boinc   1560580 Oct 12 19:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:21:07] drwx------ 5 boinc boinc      4096 Oct 12 19:01 pilot3
[2025-10-12 20:21:07] -rw------- 1 boinc boinc 190054691 Oct 12 20:20 HITS.46676269._070005.pool.root.1
[2025-10-12 20:21:07] -rw------- 1 boinc boinc        95 Oct 12 20:20 pilot_heartbeat.json
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:20 boinc_task_state.xml
[2025-10-12 20:21:07] -rw------- 1 boinc boinc      1017 Oct 12 20:20 memory_monitor_summary.json
[2025-10-12 20:21:07] -rw------- 1 boinc boinc    265239 Oct 12 20:20 log.46676269._070005.job.log.tgz.1
[2025-10-12 20:21:07] -rw------- 1 boinc boinc      7751 Oct 12 20:20 heartbeat.json
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:20 boinc_mmap_file
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:20 wrapper_checkpoint.txt
[2025-10-12 20:21:07] -rw------- 1 boinc boinc       747 Oct 12 20:21 pilotlog.txt
[2025-10-12 20:21:07] -rw------- 1 boinc boinc    695712 Oct 12 20:21 log.46676269._070005.job.log.1
[2025-10-12 20:21:07] -rw------- 1 boinc boinc       357 Oct 12 20:21 output.list
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:21 runtime_log
[2025-10-12 20:21:07] -rw------- 1 boinc boinc    983040 Oct 12 20:21 result.tar.gz
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc      8782 Oct 12 20:21 runtime_log.err
[2025-10-12 20:21:07] -rw------- 1 boinc boinc       659 Oct 12 20:21 di5NDmPf1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm34SMDmSNPAqm.diag
[2025-10-12 20:21:07] -rw-r--r-- 1 boinc boinc     11742 Oct 12 20:21 stderr.txt
[2025-10-12 20:21:07] HITS file was successfully produced:
[2025-10-12 20:21:07] -rw------- 1 boinc boinc 190054691 Oct 12 20:20 shared/HITS.pool.root.1
[2025-10-12 20:21:07]  *** Contents of shared directory: ***
[2025-10-12 20:21:07] total 403936
[2025-10-12 20:21:07] -rw-r--r-- 2 boinc boinc 221990156 Oct 12 19:01 ATLAS.root_0
[2025-10-12 20:21:07] -rw-r--r-- 2 boinc boinc    569675 Oct 12 19:01 input.tar.gz
[2025-10-12 20:21:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:01 start_atlas.sh
[2025-10-12 20:21:07] -rw------- 1 boinc boinc 190054691 Oct 12 20:20 HITS.pool.root.1
[2025-10-12 20:21:07] -rw------- 1 boinc boinc    983040 Oct 12 20:21 result.tar.gz
20:21:08 (3120551): run_atlas exited; CPU time 13533.945366
20:21:08 (3120551): called boinc_finish(0)

</stderr_txt>
]]>

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