Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:53:45 (2083118): wrapper (7.7.26015): starting
08:53:45 (2083118): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:53:45] Arguments: --nthreads 12
[2025-10-12 08:53:45] Threads: 12
[2025-10-12 08:53:45] Checking for CVMFS
[2025-10-12 08:53:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:53:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:53:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:53:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:53:45] 2.11.0.0 3299214 2847 84176 151613 3 188 5328878 6144001 13656 130560 0 55847961 100.000 99488 197 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 08:53:45] CVMFS is ok
[2025-10-12 08:53:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:53:45] Checking for apptainer binary...
[2025-10-12 08:53:45] apptainer is not installed, using version from CVMFS
[2025-10-12 08:53:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:53:46] radiat0r
[2025-10-12 08:53:46] apptainer works
[2025-10-12 08:53:46] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:53:46] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:53:46] Starting ATLAS job with PandaID=6838850525
[2025-10-12 08:53:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:50:10]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:50:10] 2025-10-12 09:49:06,009 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6838850525/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:50:10] 2025-10-12 09:49:06,009 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 09:50:10] 2025-10-12 09:49:06,010 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 09:50:10] 2025-10-12 09:49:06,010 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4519199 B
[2025-10-12 09:50:10] 2025-10-12 09:49:06,010 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15779 B
[2025-10-12 09:50:10] 2025-10-12 09:49:06,011 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-10-12 09:50:10] 2025-10-12 09:49:06,031 | INFO     | sufficient remaining disk space (1725367844864 B)
[2025-10-12 09:50:10] 2025-10-12 09:49:06,031 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 09:50:10] 2025-10-12 09:49:06,032 | INFO     | size of work directory /var/lib/boinc/slots/23/PanDA_Pilot-6838850525: 4807880 B (within 2537553920 B limit)
[2025-10-12 09:50:10] 2025-10-12 09:49:06,032 | INFO     | pfn file=/var/lib/boinc/slots/23/PanDA_Pilot-6838850525/HITS.46676269._063201.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 09:50:10] 2025-10-12 09:49:06,033 | INFO     | total size of present files: 0 B (workdir size: 4807880 B)
[2025-10-12 09:50:10] 2025-10-12 09:49:06,033 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/23/PanDA_Pilot-6838850525/HITS.46676269._063201.pool.root.1 since it does not exist
[2025-10-12 09:50:10] 2025-10-12 09:49:06,580 | INFO     | number of running child processes to parent process 2099339: 1
[2025-10-12 09:50:10] 2025-10-12 09:49:06,580 | INFO     | maximum number of monitored processes: 6
[2025-10-12 09:50:10] 2025-10-12 09:49:07,126 | INFO     | time since job start (3307s) is within the limit (172800.0s)
[2025-10-12 09:50:10] 2025-10-12 09:49:07,596 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:50:10] 2025-10-12 09:49:07,691 | INFO     | job 6838850525 has state=finished
[2025-10-12 09:50:10] 2025-10-12 09:49:07,692 | INFO     | preparing for final server update for job 6838850525 in state='finished'
[2025-10-12 09:50:10] 2025-10-12 09:49:07,692 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:50:10] 2025-10-12 09:49:07,692 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:50:10] 2025-10-12 09:49:07,692 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:50:10] 2025-10-12 09:49:07,693 | INFO     | job 6838850525 has finished - writing final server update
[2025-10-12 09:50:10] 2025-10-12 09:49:07,693 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:50:10] 2025-10-12 09:49:07,695 | INFO     | executing command: lscpu
[2025-10-12 09:50:10] 2025-10-12 09:49:07,894 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:50:10] 2025-10-12 09:49:09,082 | INFO     | monitor loop #229: job 0:6838850525 is in state 'finished'
[2025-10-12 09:50:10] 2025-10-12 09:49:09,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:50:10] 2025-10-12 09:49:09,132 | INFO     | time since job start (3309s) is within the limit (172800.0s)
[2025-10-12 09:50:10] 2025-10-12 09:49:11,135 | INFO     | time since job start (3311s) is within the limit (172800.0s)
[2025-10-12 09:50:10] 2025-10-12 09:49:11,586 | INFO     | monitor loop #230: job 0:6838850525 is in state 'finished'
[2025-10-12 09:50:10] 2025-10-12 09:49:11,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:50:10] 2025-10-12 09:49:13,100 | INFO     | PID=2088498 has CPU usage=23.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 09:50:10] 2025-10-12 09:49:13,100 | INFO     | .. there are 17 such processes running
[2025-10-12 09:50:10] 2025-10-12 09:49:14,089 | INFO     | monitor loop #231: job 0:6838850525 is in state 'finished'
[2025-10-12 09:50:10] 2025-10-12 09:49:14,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,101 | INFO     | time since job start (3314s) is within the limit (172800.0s)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,130 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 09:50:10] 2025-10-12 09:49:14,187 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2256.5732695312495
[2025-10-12 09:50:10] 2025-10-12 09:49:14,240 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6838850525/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,241 | INFO     | extracted standard info from prmon json
[2025-10-12 09:50:10] 2025-10-12 09:49:14,241 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:50:10] 2025-10-12 09:49:14,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:50:10] 2025-10-12 09:49:14,242 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:50:10] 2025-10-12 09:49:14,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:50:10] 2025-10-12 09:49:14,244 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:50:10] 2025-10-12 09:49:14,244 | INFO     | sum of square deviations: 32179208.0
[2025-10-12 09:50:10] 2025-10-12 09:49:14,244 | INFO     | sum of deviations: 440913978.00000006
[2025-10-12 09:50:10] 2025-10-12 09:49:14,244 | INFO     | mean x: 1760260979.0
[2025-10-12 09:50:10] 2025-10-12 09:49:14,244 | INFO     | mean y: 2661700.170212766
[2025-10-12 09:50:10] 2025-10-12 09:49:14,244 | INFO     | -- intersect: -24116131732.193462
[2025-10-12 09:50:10] 2025-10-12 09:49:14,245 | INFO     | intersect: -24116131732.193462
[2025-10-12 09:50:10] 2025-10-12 09:49:14,245 | INFO     | chi2: 0.002181428480404855
[2025-10-12 09:50:10] 2025-10-12 09:49:14,245 | INFO     | -- intersect: -24116131732.193462
[2025-10-12 09:50:10] 2025-10-12 09:49:14,245 | INFO     | current memory leak: 13.70 B/s (using 47 data points, chi2=0.00)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,245 | INFO     | could have reported an average CPU frequency of 2296 MHz (5 samples)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,245 | INFO     | ..............................
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . Timing measurements:
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . get job = 0 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . initial setup = 3 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . payload setup = 7 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . stage-in = 0 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . payload execution = 3275 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . stage-out = 1 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | . log creation = 0 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,246 | INFO     | ..............................
[2025-10-12 09:50:10] 2025-10-12 09:49:14,837 | INFO     | 
[2025-10-12 09:50:10] 2025-10-12 09:49:14,837 | INFO     | job summary report
[2025-10-12 09:50:10] 2025-10-12 09:49:14,837 | INFO     | --------------------------------------------------
[2025-10-12 09:50:10] 2025-10-12 09:49:14,837 | INFO     | PanDA job id: 6838850525
[2025-10-12 09:50:10] 2025-10-12 09:49:14,837 | INFO     | task id: 46676269
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | errors: (none)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | pilot state: finished 
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | transexitcode: 0
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | exeerrorcode: 0
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | exeerrordiag: 
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | exitcode: 0
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | exitmsg: OK
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | cpuconsumptiontime: 35481 s
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | nevents: 400
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | neventsw: 0
[2025-10-12 09:50:10] 2025-10-12 09:49:14,838 | INFO     | pid: 2099339
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | pgrp: 2099339
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | corecount: 12
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | event service: False
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | sizes: {0: 2348858, 6: 2349120, 11: 2349148, 3286: 2374895, 3288: 2383895, 3290: 2383979, 3297: 2384333}
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | --------------------------------------------------
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | 
[2025-10-12 09:50:10] 2025-10-12 09:49:14,839 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-10-12 09:50:10] 2025-10-12 09:49:14,869 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:50:10] 2025-10-12 09:49:14,872 | INFO     | job 6838850525 has completed (purged errors)
[2025-10-12 09:50:10] 2025-10-12 09:49:14,872 | INFO     | overall cleanup function is called
[2025-10-12 09:50:10] 2025-10-12 09:49:15,878 | INFO     | --- collectZombieJob: --- 10, [2099339]
[2025-10-12 09:50:10] 2025-10-12 09:49:15,879 | INFO     | zombie collector waiting for pid 2099339
[2025-10-12 09:50:10] 2025-10-12 09:49:15,879 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:50:10] 2025-10-12 09:49:15,879 | INFO     | collected zombie processes
[2025-10-12 09:50:10] 2025-10-12 09:49:15,879 | INFO     | will attempt to kill all subprocesses of pid=2099339
[2025-10-12 09:50:10] 2025-10-12 09:49:16,663 | INFO     | process IDs to be killed: [2099339] (in reverse order)
[2025-10-12 09:50:10] 2025-10-12 09:49:16,929 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:50:10] 2025-10-12 09:49:16,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:50:10] 2025-10-12 09:49:16,957 | INFO     | did not find any defunct processes belonging to 2099339
[2025-10-12 09:50:10] 2025-10-12 09:49:16,982 | INFO     | did not find any defunct processes belonging to 2099339
[2025-10-12 09:50:10] 2025-10-12 09:49:16,982 | INFO     | ready for new job
[2025-10-12 09:50:10] 2025-10-12 09:49:16,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:50:10] 2025-10-12 09:49:16,984 | INFO     | ***************************************
[2025-10-12 09:50:10] 2025-10-12 09:49:16,984 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:50:10] 2025-10-12 09:49:16,984 | INFO     | ***************************************
[2025-10-12 09:50:10] 2025-10-12 09:49:16,984 | INFO     | 
[2025-10-12 09:50:10] 2025-10-12 09:49:17,020 | INFO     | architecture information:
[2025-10-12 09:50:10] 2025-10-12 09:49:17,021 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:50:10] 2025-10-12 09:49:17,044 | INFO     | cat /etc/os-release:
[2025-10-12 09:50:10] NAME="CentOS Linux"
[2025-10-12 09:50:10] VERSION="7 (Core)"
[2025-10-12 09:50:10] ID="centos"
[2025-10-12 09:50:10] ID_LIKE="rhel fedora"
[2025-10-12 09:50:10] VERSION_ID="7"
[2025-10-12 09:50:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:50:10] ANSI_COLOR="0;31"
[2025-10-12 09:50:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:50:10] HOME_URL="https://www.centos.org/"
[2025-10-12 09:50:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:50:10] 
[2025-10-12 09:50:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:50:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:50:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:50:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:50:10] 
[2025-10-12 09:50:10] 2025-10-12 09:49:17,045 | INFO     | ***************************************
[2025-10-12 09:50:10] 2025-10-12 09:49:17,548 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-10-12 09:50:10] 2025-10-12 09:49:17,577 | INFO     | sufficient remaining disk space (1725365747712 B)
[2025-10-12 09:50:10] 2025-10-12 09:49:17,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:50:10] 2025-10-12 09:49:17,578 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:50:10] 2025-10-12 09:49:17,578 | INFO     | update_server=False
[2025-10-12 09:50:10] 2025-10-12 09:49:17,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:50:10] 2025-10-12 09:49:17,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:50:10] 2025-10-12 09:49:17,595 | INFO     | aborting loop
[2025-10-12 09:50:10] 2025-10-12 09:49:17,998 | INFO     | all data control threads have been joined
[2025-10-12 09:50:10] 2025-10-12 09:49:18,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:50:10] 2025-10-12 09:49:18,583 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:18,598 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:18,826 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:18,936 | INFO     | [job] validate thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:18,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:50:10] 2025-10-12 09:49:19,003 | INFO     | [data] control thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:19,083 | INFO     | all payload control threads have been joined
[2025-10-12 09:50:10] 2025-10-12 09:49:19,090 | INFO     | all job control threads have been joined
[2025-10-12 09:50:10] 2025-10-12 09:49:19,099 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:19,163 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:19,253 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:19,266 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:19,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:50:10] 2025-10-12 09:49:19,355 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:19,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:20,088 | INFO     | [payload] control thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:20,094 | INFO     | [job] control thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:20,360 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:20,948 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:22,202 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:50:10] 2025-10-12 09:49:48,000 | INFO     | PID=2088498 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:50:10] 2025-10-12 09:49:48,000 | INFO     | .. there are 17 such processes running
[2025-10-12 09:50:10] 2025-10-12 09:49:48,002 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:50:10] 2025-10-12 09:49:48,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:50:10] 2025-10-12 09:49:48,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:50:10] 2025-10-12 09:50:04,596 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:50:10] 2025-10-12 09:50:05,274 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741309187904)>', '<ExcThread(monitor, started 139740720396032)>']
[2025-10-12 09:50:10] 2025-10-12 09:50:06,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:50:10] 2025-10-12 09:50:06,083 | INFO     | [monitor] control thread has ended
[2025-10-12 09:50:10] 2025-10-12 09:50:10,288 | INFO     | all workflow threads have been joined
[2025-10-12 09:50:10] 2025-10-12 09:50:10,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:50:10] 2025-10-12 09:50:10,288 | INFO     | traces error code: 0
[2025-10-12 09:50:10] 2025-10-12 09:50:10,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:50:10] 2025-10-12 09:50:10,450 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:50:10] 2025-10-12 09:50:10,454 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:50:10] 2025-10-12 09:50:10,457 [wrapper] pilotpid: 2088498
[2025-10-12 09:50:10] 2025-10-12 09:50:10,460 [wrapper] Pilot exit status: 0
[2025-10-12 09:50:10] 2025-10-12 09:50:10,472 [wrapper] pandaids: 6838850525
[2025-10-12 09:50:10] 2025-10-12 09:50:10,656 [wrapper] cleanup supervisor_pilot 2454996 2088499
[2025-10-12 09:50:10] 2025-10-12 09:50:10,660 [wrapper] Test setup, not cleaning
[2025-10-12 09:50:10] 2025-10-12 09:50:10,665 [wrapper] apfmon messages muted
[2025-10-12 09:50:10] 2025-10-12 09:50:10,668 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:50:10] 2025-10-12 09:50:10,672 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:50:10]  *** Error codes and diagnostics ***
[2025-10-12 09:50:10]     "exeErrorCode": 0,
[2025-10-12 09:50:10]     "exeErrorDiag": "",
[2025-10-12 09:50:10]     "pilotErrorCode": 0,
[2025-10-12 09:50:10]     "pilotErrorDiag": "",
[2025-10-12 09:50:10]  *** Listing of results directory ***
[2025-10-12 09:50:10] total 412780
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc    557409 Oct 11 18:56 pilot3.tar.gz
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc      5112 Oct 11 18:58 queuedata.json
[2025-10-12 09:50:10] -rwx------ 1 boinc boinc     36292 Oct 11 19:01 runpilot2-wrapper.sh
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc       100 Oct 12 08:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:50:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 08:53 run_atlas
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc       105 Oct 12 08:53 job.xml
[2025-10-12 09:50:10] -rw-r--r-- 2 boinc boinc 221713204 Oct 12 08:53 EVNT.46676267._002539.pool.root.1
[2025-10-12 09:50:10] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:53 start_atlas.sh
[2025-10-12 09:50:10] drwxrwx--x 2 boinc boinc      4096 Oct 12 08:53 shared
[2025-10-12 09:50:10] -rw-r--r-- 2 boinc boinc    569682 Oct 12 08:53 input.tar.gz
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc      9396 Oct 12 08:53 init_data.xml
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:53 boinc_setup_complete
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:53 boinc_lockfile
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc      2550 Oct 12 08:53 pandaJob.out
[2025-10-12 09:50:10] -rw------- 1 boinc boinc    975520 Oct 12 08:53 agis_schedconf.cvmfs.json
[2025-10-12 09:50:10] -rw------- 1 boinc boinc   1560580 Oct 12 08:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:50:10] drwx------ 5 boinc boinc      4096 Oct 12 08:54 pilot3
[2025-10-12 09:50:10] -rw------- 1 boinc boinc 195336283 Oct 12 09:48 HITS.46676269._063201.pool.root.1
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc       529 Oct 12 09:48 boinc_task_state.xml
[2025-10-12 09:50:10] -rw------- 1 boinc boinc      1027 Oct 12 09:49 memory_monitor_summary.json
[2025-10-12 09:50:10] -rw------- 1 boinc boinc    376093 Oct 12 09:49 log.46676269._063201.job.log.tgz.1
[2025-10-12 09:50:10] -rw------- 1 boinc boinc      7740 Oct 12 09:49 heartbeat.json
[2025-10-12 09:50:10] -rw------- 1 boinc boinc        95 Oct 12 09:49 pilot_heartbeat.json
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:50 boinc_mmap_file
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc        27 Oct 12 09:50 wrapper_checkpoint.txt
[2025-10-12 09:50:10] -rw------- 1 boinc boinc      4827 Oct 12 09:50 pilotlog.txt
[2025-10-12 09:50:10] -rw------- 1 boinc boinc    489796 Oct 12 09:50 log.46676269._063201.job.log.1
[2025-10-12 09:50:10] -rw------- 1 boinc boinc       357 Oct 12 09:50 output.list
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc       620 Oct 12 09:50 runtime_log
[2025-10-12 09:50:10] -rw------- 1 boinc boinc    880640 Oct 12 09:50 result.tar.gz
[2025-10-12 09:50:10] -rw------- 1 boinc boinc       643 Oct 12 09:50 UsvMDmA1tR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqLhNDmqoEAbm.diag
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc      8672 Oct 12 09:50 runtime_log.err
[2025-10-12 09:50:10] -rw-r--r-- 1 boinc boinc     22205 Oct 12 09:50 stderr.txt
[2025-10-12 09:50:10] HITS file was successfully produced:
[2025-10-12 09:50:10] -rw------- 1 boinc boinc 195336283 Oct 12 09:48 shared/HITS.pool.root.1
[2025-10-12 09:50:10]  *** Contents of shared directory: ***
[2025-10-12 09:50:10] total 408724
[2025-10-12 09:50:10] -rw-r--r-- 2 boinc boinc 221713204 Oct 12 08:53 ATLAS.root_0
[2025-10-12 09:50:10] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:53 start_atlas.sh
[2025-10-12 09:50:10] -rw-r--r-- 2 boinc boinc    569682 Oct 12 08:53 input.tar.gz
[2025-10-12 09:50:10] -rw------- 1 boinc boinc 195336283 Oct 12 09:48 HITS.pool.root.1
[2025-10-12 09:50:10] -rw------- 1 boinc boinc    880640 Oct 12 09:50 result.tar.gz
09:50:12 (2083118): run_atlas exited; CPU time 35694.511429
09:50:12 (2083118): called boinc_finish(0)

</stderr_txt>
]]>

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