Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:54:25 (1058792): wrapper (7.7.26015): starting
17:54:25 (1058792): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 17:54:25] Arguments: --nthreads 4
[2025-10-13 17:54:25] Threads: 4
[2025-10-13 17:54:25] Checking for CVMFS
[2025-10-13 17:54:25] No cvmfs_config command found, will try listing directly
[2025-10-13 17:54:25] CVMFS is ok
[2025-10-13 17:54:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:54:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:54:25] Further information can be found at the LHC@home message board.
[2025-10-13 17:54:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:54:25] Checking for apptainer binary...
[2025-10-13 17:54:25] which: no apptainer in ((null))
[2025-10-13 17:54:25] apptainer is not installed, using version from CVMFS
[2025-10-13 17:54:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:54:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-10-13 17:54:26] apptainer works
[2025-10-13 17:54:26] Set ATHENA_PROC_NUMBER=4
[2025-10-13 17:54:26] Set ATHENA_CORE_NUMBER=4
[2025-10-13 17:54:26] Starting ATLAS job with PandaID=6839590714
[2025-10-13 17:54:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:25:17 (1226393): wrapper (7.7.26015): starting
19:25:17 (1226393): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 19:25:17] Arguments: --nthreads 4
[2025-10-13 19:25:17] Threads: 4
[2025-10-13 19:25:17] This job has been restarted, cleaning up previous attempt
[2025-10-13 19:25:17] Checking for CVMFS
[2025-10-13 19:25:17] No cvmfs_config command found, will try listing directly
[2025-10-13 19:25:17] CVMFS is ok
[2025-10-13 19:25:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:25:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:25:17] Further information can be found at the LHC@home message board.
[2025-10-13 19:25:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:25:17] Checking for apptainer binary...
[2025-10-13 19:25:17] which: no apptainer in ((null))
[2025-10-13 19:25:17] apptainer is not installed, using version from CVMFS
[2025-10-13 19:25:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:25:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-10-13 19:25:17] apptainer works
[2025-10-13 19:25:17] Set ATHENA_PROC_NUMBER=4
[2025-10-13 19:25:17] Set ATHENA_CORE_NUMBER=4
[2025-10-13 19:25:17] Starting ATLAS job with PandaID=6839590714
[2025-10-13 19:25:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:24:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:24:21] 2025-10-13 19:49:44,330 | INFO     | fitting pss+swap vs Time
[2025-10-13 22:24:21] 2025-10-13 19:49:44,331 | INFO     | sum of square deviations: 887813855.5
[2025-10-13 22:24:21] 2025-10-13 19:49:44,331 | INFO     | sum of deviations: 4454036481.5
[2025-10-13 22:24:21] 2025-10-13 19:49:44,332 | INFO     | mean x: 1760380664.5
[2025-10-13 22:24:21] 2025-10-13 19:49:44,332 | INFO     | mean y: 2299806.8380281692
[2025-10-13 22:24:21] 2025-10-13 19:49:44,332 | INFO     | -- intersect: -8829280881.429585
[2025-10-13 22:24:21] 2025-10-13 19:49:44,332 | INFO     | intersect: -8829280881.429585
[2025-10-13 22:24:21] 2025-10-13 19:49:44,332 | INFO     | chi2: 1.9288984687478972
[2025-10-13 22:24:21] 2025-10-13 19:49:44,332 | INFO     | sum of square deviations: 797291228.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,333 | INFO     | sum of deviations: 13028524997.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,333 | INFO     | mean x: 1760380512.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,333 | INFO     | mean y: 2313826.8467153283
[2025-10-13 22:24:21] 2025-10-13 19:49:44,333 | INFO     | -- intersect: -28764039921.151196
[2025-10-13 22:24:21] 2025-10-13 19:49:44,334 | INFO     | intersect: -28764039921.151196
[2025-10-13 22:24:21] 2025-10-13 19:49:44,334 | INFO     | chi2: 1.1285665109264398
[2025-10-13 22:24:21] 2025-10-13 19:49:44,334 | INFO     | current chi2=1.1285665109264398 (change=41.491658103755746 %)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,334 | INFO     | sum of square deviations: 713140813.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,335 | INFO     | sum of deviations: 12585597165.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,335 | INFO     | mean x: 1760380359.5
[2025-10-13 22:24:21] 2025-10-13 19:49:44,335 | INFO     | mean y: 2313023.803030303
[2025-10-13 22:24:21] 2025-10-13 19:49:44,335 | INFO     | -- intersect: -31065097027.57609
[2025-10-13 22:24:21] 2025-10-13 19:49:44,335 | INFO     | intersect: -31065097027.57609
[2025-10-13 22:24:21] 2025-10-13 19:49:44,335 | INFO     | chi2: 1.1296641972281154
[2025-10-13 22:24:21] 2025-10-13 19:49:44,336 | INFO     | current chi2=1.1296641972281154 (change=-0.09726376700426148 %)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,336 | INFO     | right removable region: 131
[2025-10-13 22:24:21] 2025-10-13 19:49:44,336 | INFO     | sum of square deviations: 797291228.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | sum of deviations: -10159243353.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | mean x: 1760380817.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | mean y: 2323918.416058394
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | -- intersect: 22433446306.051258
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | intersect: 22433446306.051258
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | chi2: 0.8274734094479768
[2025-10-13 22:24:21] 2025-10-13 19:49:44,337 | INFO     | current chi2=0.8274734094479768 (change=57.10124597770492 %)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,338 | INFO     | sum of square deviations: 713140813.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,338 | INFO     | sum of deviations: -10032414379.5
[2025-10-13 22:24:21] 2025-10-13 19:49:44,338 | INFO     | mean x: 1760380969.5
[2025-10-13 22:24:21] 2025-10-13 19:49:44,338 | INFO     | mean y: 2323684.4015151514
[2025-10-13 22:24:21] 2025-10-13 19:49:44,339 | INFO     | -- intersect: 24767238312.573204
[2025-10-13 22:24:21] 2025-10-13 19:49:44,339 | INFO     | intersect: 24767238312.573204
[2025-10-13 22:24:21] 2025-10-13 19:49:44,339 | INFO     | chi2: 0.8277774213126767
[2025-10-13 22:24:21] 2025-10-13 19:49:44,339 | INFO     | current chi2=0.8277774213126767 (change=-0.03673977450257686 %)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,339 | INFO     | left removable region: 20
[2025-10-13 22:24:21] 2025-10-13 19:49:44,339 | INFO     | sum of square deviations: 424045160.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,340 | INFO     | sum of deviations: -1265569379.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,340 | INFO     | mean x: 1760380939.0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,340 | INFO     | mean y: 2339507.5225225226
[2025-10-13 22:24:21] 2025-10-13 19:49:44,340 | INFO     | -- intersect: 5256223814.971444
[2025-10-13 22:24:21] 2025-10-13 19:49:44,340 | INFO     | intersect: 5256223814.971444
[2025-10-13 22:24:21] 2025-10-13 19:49:44,341 | INFO     | chi2: 0.0027958166757750588
[2025-10-13 22:24:21] 2025-10-13 19:49:44,341 | INFO     | -- intersect: 5256223814.971444
[2025-10-13 22:24:21] 2025-10-13 19:49:44,341 | INFO     | current memory leak: -2.98 B/s (using 111 data points, chi2=0.00)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,341 | INFO     | could have reported an average CPU frequency of 2739 MHz (8 samples)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,341 | INFO     | ..............................
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . Timing measurements:
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . get job = 0 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . initial setup = 1 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . payload setup = 8 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . stage-in = 0 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . payload execution = 8610 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . stage-out = 1 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | . log creation = 0 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,342 | INFO     | ..............................
[2025-10-13 22:24:21] 2025-10-13 19:49:44,442 | INFO     | 
[2025-10-13 22:24:21] 2025-10-13 19:49:44,442 | INFO     | job summary report
[2025-10-13 22:24:21] 2025-10-13 19:49:44,442 | INFO     | --------------------------------------------------
[2025-10-13 22:24:21] 2025-10-13 19:49:44,442 | INFO     | PanDA job id: 6839590714
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | task id: 46676269
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | errors: (none)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | pilot state: finished 
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | transexitcode: 0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | exeerrorcode: 0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | exeerrordiag: 
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | exitcode: 0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | exitmsg: OK
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | cpuconsumptiontime: 33038 s
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | nevents: 400
[2025-10-13 22:24:21] 2025-10-13 19:49:44,443 | INFO     | neventsw: 0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | pid: 1347044
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | pgrp: 1347044
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | corecount: 4
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | event service: False
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | sizes: {0: 2348869, 7: 2349131, 11: 2349159, 8622: 2377696, 8623: 2377695, 8624: 2386773, 8627: 2386957, 8636: 2387151}
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | --------------------------------------------------
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | 
[2025-10-13 22:24:21] 2025-10-13 19:49:44,444 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-10-13 22:24:21] 2025-10-13 19:49:44,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,475 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | job 6839590714 has completed (purged errors)
[2025-10-13 22:24:21] 2025-10-13 19:49:44,477 | INFO     | overall cleanup function is called
[2025-10-13 22:24:21] 2025-10-13 19:49:45,487 | INFO     | --- collectZombieJob: --- 10, [1347044]
[2025-10-13 22:24:21] 2025-10-13 19:49:45,487 | INFO     | zombie collector waiting for pid 1347044
[2025-10-13 22:24:21] 2025-10-13 19:49:45,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:24:21] 2025-10-13 19:49:45,488 | INFO     | collected zombie processes
[2025-10-13 22:24:21] 2025-10-13 19:49:45,488 | INFO     | will attempt to kill all subprocesses of pid=1347044
[2025-10-13 22:24:21] 2025-10-13 19:49:46,236 | INFO     | process IDs to be killed: [1347044] (in reverse order)
[2025-10-13 22:24:21] 2025-10-13 19:49:46,421 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:24:21] 2025-10-13 19:49:46,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:24:21] 2025-10-13 19:49:46,449 | INFO     | did not find any defunct processes belonging to 1347044
[2025-10-13 22:24:21] 2025-10-13 19:49:46,472 | INFO     | did not find any defunct processes belonging to 1347044
[2025-10-13 22:24:21] 2025-10-13 19:49:46,472 | INFO     | ready for new job
[2025-10-13 22:24:21] 2025-10-13 19:49:46,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:24:21] 2025-10-13 19:49:46,475 | INFO     | ***************************************
[2025-10-13 22:24:21] 2025-10-13 19:49:46,475 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:24:21] 2025-10-13 19:49:46,475 | INFO     | ***************************************
[2025-10-13 22:24:21] 2025-10-13 19:49:46,475 | INFO     | 
[2025-10-13 22:24:21] 2025-10-13 19:49:46,483 | INFO     | architecture information:
[2025-10-13 22:24:21] 2025-10-13 19:49:46,483 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:24:21] 2025-10-13 19:49:46,504 | INFO     | cat /etc/os-release:
[2025-10-13 22:24:21] NAME="CentOS Linux"
[2025-10-13 22:24:21] VERSION="7 (Core)"
[2025-10-13 22:24:21] ID="centos"
[2025-10-13 22:24:21] ID_LIKE="rhel fedora"
[2025-10-13 22:24:21] VERSION_ID="7"
[2025-10-13 22:24:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:24:21] ANSI_COLOR="0;31"
[2025-10-13 22:24:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:24:21] HOME_URL="https://www.centos.org/"
[2025-10-13 22:24:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:24:21] 
[2025-10-13 22:24:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:24:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:24:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:24:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:24:21] 
[2025-10-13 22:24:21] 2025-10-13 19:49:46,504 | INFO     | ***************************************
[2025-10-13 22:24:21] 2025-10-13 19:49:47,007 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-10-13 22:24:21] 2025-10-13 19:49:47,032 | INFO     | sufficient remaining disk space (3349859532800 B)
[2025-10-13 22:24:21] 2025-10-13 19:49:47,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:24:21] 2025-10-13 19:49:47,033 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:24:21] 2025-10-13 19:49:47,033 | INFO     | update_server=False
[2025-10-13 22:24:21] 2025-10-13 19:49:47,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:24:21] 2025-10-13 19:49:47,377 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:24:21] 2025-10-13 19:49:47,377 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:24:21] 2025-10-13 19:49:47,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:24:21] 2025-10-13 19:49:47,377 | INFO     | will abort loop
[2025-10-13 22:24:21] 2025-10-13 19:49:47,822 | INFO     | all job control threads have been joined
[2025-10-13 22:24:21] 2025-10-13 19:49:47,823 | INFO     | all data control threads have been joined
[2025-10-13 22:24:21] 2025-10-13 19:49:48,039 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,106 | INFO     | all payload control threads have been joined
[2025-10-13 22:24:21] 2025-10-13 19:49:48,159 | INFO     | [job] validate thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,222 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,360 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,362 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,383 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:24:21] 2025-10-13 19:49:48,656 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,826 | INFO     | [job] control thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,828 | INFO     | [data] control thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:48,879 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:49,111 | INFO     | [payload] control thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:49,352 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:49,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:24:21] 2025-10-13 19:49:50,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:24:21] 2025-10-13 19:49:50,455 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:50,489 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:54,379 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:49:57,635 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:24:21] 2025-10-13 19:49:58,636 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:24:21] 2025-10-13 19:50:17,125 | INFO     | PID=1257067 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:24:21] 2025-10-13 19:50:17,132 | INFO     | .. there are 9 such processes running
[2025-10-13 22:24:21] 2025-10-13 19:50:17,134 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:24:21] 2025-10-13 19:50:17,134 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:24:21] 2025-10-13 19:50:17,134 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:24:21] 2025-10-13 19:50:44,122 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:24:21] 2025-10-13 19:50:45,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22420811257664)>', '<ExcThread(monitor, started 22420574398208)>']
[2025-10-13 22:24:21] 2025-10-13 19:50:45,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:24:21] 2025-10-13 19:50:45,260 | INFO     | [monitor] control thread has ended
[2025-10-13 22:24:21] 2025-10-13 19:50:50,034 | INFO     | all workflow threads have been joined
[2025-10-13 22:24:21] 2025-10-13 19:50:50,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:24:21] 2025-10-13 19:50:50,035 | INFO     | traces error code: 0
[2025-10-13 22:24:21] 2025-10-13 19:50:50,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:24:21] 2025-10-13 19:50:50,218 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:24:21] 2025-10-13 19:50:50,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:24:21] 2025-10-13 19:50:50,227 [wrapper] pilotpid: 1257067
[2025-10-13 22:24:21] 2025-10-13 19:50:50,231 [wrapper] Pilot exit status: 0
[2025-10-13 22:24:21] 2025-10-13 19:50:50,245 [wrapper] pandaids: 6839590714 6839590714
[2025-10-13 22:24:21] 2025-10-13 19:50:50,405 [wrapper] cleanup supervisor_pilot 1830627 1257071
[2025-10-13 22:24:21] 2025-10-13 19:50:50,409 [wrapper] Test setup, not cleaning
[2025-10-13 22:24:21] 2025-10-13 19:50:50,413 [wrapper] apfmon messages muted
[2025-10-13 22:24:21] 2025-10-13 19:50:50,417 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:24:21] 2025-10-13 19:50:50,421 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:24:21]  *** Error codes and diagnostics ***
[2025-10-13 22:24:21]     "exeErrorCode": 0,
[2025-10-13 22:24:21]     "exeErrorDiag": "",
[2025-10-13 22:24:21]     "pilotErrorCode": 0,
[2025-10-13 22:24:21]     "pilotErrorDiag": "",
[2025-10-13 22:24:21]  *** Listing of results directory ***
[2025-10-13 22:24:21] total 628212
[2025-10-13 22:24:21] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 22:24:21] -rwx------ 1 boinc boinc     36292 Oct 12 08:16 runpilot2-wrapper.sh
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:16 queuedata.json
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:24:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:54 run_atlas
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:54 job.xml
[2025-10-13 22:24:21] -rw-r--r-- 3 boinc boinc 224165377 Oct 13 17:54 EVNT.46676267._004336.pool.root.1
[2025-10-13 22:24:21] -rw-r--r-- 3 boinc boinc 224165377 Oct 13 17:54 ATLAS.root_0
[2025-10-13 22:24:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:54 start_atlas.sh
[2025-10-13 22:24:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:54 shared
[2025-10-13 22:24:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 17:54 input.tar.gz
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:54 boinc_lockfile
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc      6693 Oct 13 19:25 init_data.xml
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:25 pandaJob.out
[2025-10-13 22:24:21] -rw------- 1 boinc boinc    972791 Oct 13 19:25 agis_schedconf.cvmfs.json
[2025-10-13 22:24:21] -rw------- 1 boinc boinc 187985428 Oct 13 21:48 HITS.46676269._072283.pool.root.1
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:49 boinc_task_state.xml
[2025-10-13 22:24:21] -rw------- 1 boinc boinc      1026 Oct 13 21:49 memory_monitor_summary.json
[2025-10-13 22:24:21] -rw------- 1 boinc boinc   1560580 Oct 13 21:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:24:21] -rw------- 1 boinc boinc    326821 Oct 13 21:49 log.46676269._072283.job.log.tgz.1
[2025-10-13 22:24:21] -rw------- 1 boinc boinc      7781 Oct 13 21:49 heartbeat.json
[2025-10-13 22:24:21] -rw------- 1 boinc boinc        97 Oct 13 21:50 pilot_heartbeat.json
[2025-10-13 22:24:21] -rw------- 1 boinc boinc      5093 Oct 13 21:50 pilotlog.txt
[2025-10-13 22:24:21] -rw------- 1 boinc boinc   1215442 Oct 13 21:50 log.46676269._072283.job.log.1
[2025-10-13 22:24:21] -rw------- 1 boinc boinc       357 Oct 13 21:50 output.list
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:50 runtime_log
[2025-10-13 22:24:21] -rw------- 1 boinc boinc   1556480 Oct 13 21:50 result.tar.gz
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc      9161 Oct 13 21:50 runtime_log.err
[2025-10-13 22:24:21] -rw------- 1 boinc boinc       788 Oct 13 21:50 27aLDm5Y4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEoiNDmDBOA5m.diag
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:24 wrapper_checkpoint.txt
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:24 boinc_mmap_file
[2025-10-13 22:24:21] -rw-r--r-- 1 boinc boinc     15769 Oct 13 22:24 stderr.txt
[2025-10-13 22:24:21] HITS file was successfully produced:
[2025-10-13 22:24:21] -rw------- 1 boinc boinc 187985428 Oct 13 21:48 shared/HITS.pool.root.1
[2025-10-13 22:24:21]  *** Contents of shared directory: ***
[2025-10-13 22:24:21] total 404596
[2025-10-13 22:24:21] -rw-r--r-- 3 boinc boinc 224165377 Oct 13 17:54 ATLAS.root_0
[2025-10-13 22:24:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:54 start_atlas.sh
[2025-10-13 22:24:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 17:54 input.tar.gz
[2025-10-13 22:24:21] -rw------- 1 boinc boinc 187985428 Oct 13 21:48 HITS.pool.root.1
[2025-10-13 22:24:21] -rw------- 1 boinc boinc   1556480 Oct 13 21:50 result.tar.gz
22:24:22 (1226393): run_atlas exited; CPU time 33556.440013
22:24:22 (1226393): called boinc_finish(0)

</stderr_txt>
]]>

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