Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:29:26 (21668): wrapper (7.7.26015): starting
04:29:26 (21668): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 04:29:26] Arguments: --nthreads 8
[2025-10-12 04:29:26] Threads: 8
[2025-10-12 04:29:26] Checking for CVMFS
[2025-10-12 04:29:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:29:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:29:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:29:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:29:27] 2.11.2.0 1598 215964 125668 151613 1 59 10155059 20275200 917 130560 1 220912449 99.992 11695065 11169 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 04:29:27] CVMFS is ok
[2025-10-12 04:29:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:29:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:29:27] Further information can be found at the LHC@home message board.
[2025-10-12 04:29:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:29:27] Checking for apptainer binary...
[2025-10-12 04:29:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:29:27] Running /usr/bin/apptainer --version
[2025-10-12 04:29:27] apptainer version 1.3.2-1.el7
[2025-10-12 04:29:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:29:27] c-205-36.aglt2.org
[2025-10-12 04:29:27] apptainer works
[2025-10-12 04:29:27] Set ATHENA_PROC_NUMBER=8
[2025-10-12 04:29:27] Set ATHENA_CORE_NUMBER=8
[2025-10-12 04:29:27] Starting ATLAS job with PandaID=6839164555
[2025-10-12 04:29:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:37:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:37:53]  status_code=0
[2025-10-12 05:37:53]  storage_token=
[2025-10-12 05:37:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839164555/log.46676269._068046.job.log.tgz.1
[2025-10-12 05:37:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/41/log.46676269._068046.job.log.tgz.1
[2025-10-12 05:37:53]  workdir=None
[2025-10-12 05:37:53] ]
[2025-10-12 05:37:53] 2025-10-12 09:37:08,304 | INFO     | transferring file log.46676269._068046.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839164555/log.46676269._068046.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 05:37:53] 2025-10-12 09:37:08,304 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839164555/log.46676269._068046.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._068046.job
[2025-10-12 05:37:53] 2025-10-12 09:37:08,324 | INFO     | adding to output.list: log.46676269._068046.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/41/log.46676269._068046.job.log.tg
[2025-10-12 05:37:53] 2025-10-12 09:37:08,325 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 05:37:53] 2025-10-12 09:37:08,325 | INFO     | summary of transferred files:
[2025-10-12 05:37:53] 2025-10-12 09:37:08,325 | INFO     |  -- lfn=log.46676269._068046.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 05:37:53] 2025-10-12 09:37:08,325 | INFO     | stage-out finished correctly
[2025-10-12 05:37:53] 2025-10-12 09:37:09,692 | INFO     | time since job start (4049s) is within the limit (172800.0s)
[2025-10-12 05:37:53] 2025-10-12 09:37:10,182 | INFO     | monitor loop #303: job 0:6839164555 is in state 'finished'
[2025-10-12 05:37:53] 2025-10-12 09:37:10,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:37:53] 2025-10-12 09:37:10,623 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 05:37:53] 2025-10-12 09:37:11,703 | INFO     | time since job start (4051s) is within the limit (172800.0s)
[2025-10-12 05:37:53] 2025-10-12 09:37:12,599 | INFO     | job 6839164555 has state=finished
[2025-10-12 05:37:53] 2025-10-12 09:37:12,599 | INFO     | preparing for final server update for job 6839164555 in state='finished'
[2025-10-12 05:37:53] 2025-10-12 09:37:12,600 | INFO     | this job has now completed (state=finished)
[2025-10-12 05:37:53] 2025-10-12 09:37:12,600 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 05:37:53] 2025-10-12 09:37:12,600 | INFO     | log transfer has been attempted: DONE
[2025-10-12 05:37:53] 2025-10-12 09:37:12,600 | INFO     | job 6839164555 has finished - writing final server update
[2025-10-12 05:37:53] 2025-10-12 09:37:12,601 | INFO     | total number of processed events: 400 (read)
[2025-10-12 05:37:53] 2025-10-12 09:37:12,602 | INFO     | executing command: lscpu
[2025-10-12 05:37:53] 2025-10-12 09:37:12,635 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 05:37:53] 2025-10-12 09:37:12,685 | INFO     | monitor loop #304: job 0:6839164555 is in state 'finished'
[2025-10-12 05:37:53] 2025-10-12 09:37:12,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:37:53] 2025-10-12 09:37:13,708 | INFO     | time since job start (4053s) is within the limit (172800.0s)
[2025-10-12 05:37:53] 2025-10-12 09:37:14,852 | INFO     | PID=25359 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 05:37:53] 2025-10-12 09:37:14,852 | INFO     | .. there are 2 such processes running
[2025-10-12 05:37:53] 2025-10-12 09:37:15,189 | INFO     | monitor loop #305: job 0:6839164555 is in state 'finished'
[2025-10-12 05:37:53] 2025-10-12 09:37:15,189 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:37:53] 2025-10-12 09:37:15,852 | INFO     | time since job start (4055s) is within the limit (172800.0s)
[2025-10-12 05:37:53] 2025-10-12 09:37:16,919 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 05:37:53] 2025-10-12 09:37:16,924 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2043.9142500000003
[2025-10-12 05:37:53] 2025-10-12 09:37:16,928 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839164555/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:37:53] 2025-10-12 09:37:16,929 | INFO     | extracted standard info from prmon json
[2025-10-12 05:37:53] 2025-10-12 09:37:16,929 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:37:53] 2025-10-12 09:37:16,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:37:53] 2025-10-12 09:37:16,930 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:37:53] 2025-10-12 09:37:16,930 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:37:53] 2025-10-12 09:37:16,932 | INFO     | fitting pss+swap vs Time
[2025-10-12 05:37:53] 2025-10-12 09:37:16,932 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 05:37:53] 2025-10-12 09:37:16,932 | INFO     | sum of deviations: -5906042387.0
[2025-10-12 05:37:53] 2025-10-12 09:37:16,932 | INFO     | mean x: 1760259879.0
[2025-10-12 05:37:53] 2025-10-12 09:37:16,933 | INFO     | mean y: 2653926.694915254
[2025-10-12 05:37:53] 2025-10-12 09:37:16,933 | INFO     | -- intersect: 163294188452.71805
[2025-10-12 05:37:53] 2025-10-12 09:37:16,933 | INFO     | intersect: 163294188452.71805
[2025-10-12 05:37:53] 2025-10-12 09:37:16,933 | INFO     | chi2: 0.01363709189306665
[2025-10-12 05:37:53] 2025-10-12 09:37:16,933 | INFO     | -- intersect: 163294188452.71805
[2025-10-12 05:37:53] 2025-10-12 09:37:16,933 | INFO     | current memory leak: -92.77 B/s (using 59 data points, chi2=0.01)
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | could have reported an average CPU frequency of 2247 MHz (6 samples)
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | ..............................
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | . Timing measurements:
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | . get job = 0 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | . initial setup = 2 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | . payload setup = 5 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,934 | INFO     | . stage-in = 0 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,935 | INFO     | . payload execution = 4021 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,935 | INFO     | . stage-out = 0 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,935 | INFO     | . log creation = 0 s
[2025-10-12 05:37:53] 2025-10-12 09:37:16,935 | INFO     | ..............................
[2025-10-12 05:37:53] 2025-10-12 09:37:17,018 | INFO     | 
[2025-10-12 05:37:53] 2025-10-12 09:37:17,018 | INFO     | job summary report
[2025-10-12 05:37:53] 2025-10-12 09:37:17,018 | INFO     | --------------------------------------------------
[2025-10-12 05:37:53] 2025-10-12 09:37:17,018 | INFO     | PanDA job id: 6839164555
[2025-10-12 05:37:53] 2025-10-12 09:37:17,018 | INFO     | task id: 46676269
[2025-10-12 05:37:53] 2025-10-12 09:37:17,018 | INFO     | errors: (none)
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | pilot state: finished 
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | transexitcode: 0
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | exeerrorcode: 0
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | exeerrordiag: 
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | exitcode: 0
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | exitmsg: OK
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | cpuconsumptiontime: 29899 s
[2025-10-12 05:37:53] 2025-10-12 09:37:17,019 | INFO     | nevents: 400
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | neventsw: 0
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | pid: 31895
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | pgrp: 31895
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | corecount: 8
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | event service: False
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 4030: 2375125, 4032: 2384123, 4035: 2384179, 4041: 2384501}
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | --------------------------------------------------
[2025-10-12 05:37:53] 2025-10-12 09:37:17,020 | INFO     | 
[2025-10-12 05:37:53] 2025-10-12 09:37:17,021 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 05:37:53] 2025-10-12 09:37:17,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:37:53] 2025-10-12 09:37:17,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:37:53] 2025-10-12 09:37:17,046 | INFO     | job 6839164555 has completed (purged errors)
[2025-10-12 05:37:53] 2025-10-12 09:37:17,046 | INFO     | overall cleanup function is called
[2025-10-12 05:37:53] 2025-10-12 09:37:18,054 | INFO     | --- collectZombieJob: --- 10, [31895]
[2025-10-12 05:37:53] 2025-10-12 09:37:18,054 | INFO     | zombie collector waiting for pid 31895
[2025-10-12 05:37:53] 2025-10-12 09:37:18,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:37:53] 2025-10-12 09:37:18,055 | INFO     | collected zombie processes
[2025-10-12 05:37:53] 2025-10-12 09:37:18,055 | INFO     | will attempt to kill all subprocesses of pid=31895
[2025-10-12 05:37:53] 2025-10-12 09:37:18,172 | INFO     | process IDs to be killed: [31895] (in reverse order)
[2025-10-12 05:37:53] 2025-10-12 09:37:18,229 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:37:53] 2025-10-12 09:37:18,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:37:53] 2025-10-12 09:37:18,233 | INFO     | did not find any defunct processes belonging to 31895
[2025-10-12 05:37:53] 2025-10-12 09:37:18,237 | INFO     | did not find any defunct processes belonging to 31895
[2025-10-12 05:37:53] 2025-10-12 09:37:18,237 | INFO     | ready for new job
[2025-10-12 05:37:53] 2025-10-12 09:37:18,238 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:37:53] 2025-10-12 09:37:18,239 | INFO     | ***************************************
[2025-10-12 05:37:53] 2025-10-12 09:37:18,240 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 05:37:53] 2025-10-12 09:37:18,240 | INFO     | ***************************************
[2025-10-12 05:37:53] 2025-10-12 09:37:18,240 | INFO     | 
[2025-10-12 05:37:53] 2025-10-12 09:37:18,241 | INFO     | architecture information:
[2025-10-12 05:37:53] 2025-10-12 09:37:18,241 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:37:53] 2025-10-12 09:37:18,258 | INFO     | cat /etc/os-release:
[2025-10-12 05:37:53] NAME="CentOS Linux"
[2025-10-12 05:37:53] VERSION="7 (Core)"
[2025-10-12 05:37:53] ID="centos"
[2025-10-12 05:37:53] ID_LIKE="rhel fedora"
[2025-10-12 05:37:53] VERSION_ID="7"
[2025-10-12 05:37:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:37:53] ANSI_COLOR="0;31"
[2025-10-12 05:37:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:37:53] HOME_URL="https://www.centos.org/"
[2025-10-12 05:37:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:37:53] 
[2025-10-12 05:37:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:37:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:37:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:37:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:37:53] 
[2025-10-12 05:37:53] 2025-10-12 09:37:18,258 | INFO     | ***************************************
[2025-10-12 05:37:53] 2025-10-12 09:37:18,761 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 05:37:53] 2025-10-12 09:37:18,779 | INFO     | sufficient remaining disk space (32690405376 B)
[2025-10-12 05:37:53] 2025-10-12 09:37:18,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:37:53] 2025-10-12 09:37:18,780 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:37:53] 2025-10-12 09:37:18,780 | INFO     | update_server=False
[2025-10-12 05:37:53] 2025-10-12 09:37:18,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:37:53] 2025-10-12 09:37:18,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:37:53] 2025-10-12 09:37:18,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:37:53] 2025-10-12 09:37:18,781 | INFO     | aborting loop
[2025-10-12 05:37:53] 2025-10-12 09:37:18,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:37:53] 2025-10-12 09:37:19,136 | INFO     | all data control threads have been joined
[2025-10-12 05:37:53] 2025-10-12 09:37:19,188 | INFO     | all payload control threads have been joined
[2025-10-12 05:37:53] 2025-10-12 09:37:19,786 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:19,786 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:19,787 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:19,939 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,100 | INFO     | all job control threads have been joined
[2025-10-12 05:37:53] 2025-10-12 09:37:20,139 | INFO     | [data] control thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,193 | INFO     | [payload] control thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,289 | INFO     | [job] validate thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,442 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,562 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,611 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,854 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,877 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:20,891 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:21,106 | INFO     | [job] control thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:21,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:37:53] 2025-10-12 09:37:25,223 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:29,564 | INFO     | job.realtimelogging is not enabled
[2025-10-12 05:37:53] 2025-10-12 09:37:30,569 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:37:53] 2025-10-12 09:37:46,619 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:37:53] 2025-10-12 09:37:48,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705554843456)>', '<ExcThread(monitor, started 140705133487872)>']
[2025-10-12 05:37:53] 2025-10-12 09:37:49,075 | INFO     | PID=25359 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 05:37:53] 2025-10-12 09:37:49,075 | INFO     | .. there are 2 such processes running
[2025-10-12 05:37:53] 2025-10-12 09:37:49,075 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:37:53] 2025-10-12 09:37:49,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:37:53] 2025-10-12 09:37:49,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:37:53] 2025-10-12 09:37:49,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:37:53] 2025-10-12 09:37:49,076 | INFO     | [monitor] control thread has ended
[2025-10-12 05:37:53] 2025-10-12 09:37:53,047 | INFO     | all workflow threads have been joined
[2025-10-12 05:37:53] 2025-10-12 09:37:53,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:37:53] 2025-10-12 09:37:53,048 | INFO     | traces error code: 0
[2025-10-12 05:37:53] 2025-10-12 09:37:53,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:37:53] 2025-10-12 09:37:53,146 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:37:53] 2025-10-12 09:37:53,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:37:53] 2025-10-12 09:37:53,153 [wrapper] pilotpid: 25359
[2025-10-12 05:37:53] 2025-10-12 09:37:53,157 [wrapper] Pilot exit status: 0
[2025-10-12 05:37:53] 2025-10-12 09:37:53,170 [wrapper] pandaids: 6839164555
[2025-10-12 05:37:53] 2025-10-12 09:37:53,208 [wrapper] cleanup supervisor_pilot 11649 25360
[2025-10-12 05:37:53] 2025-10-12 09:37:53,212 [wrapper] Test setup, not cleaning
[2025-10-12 05:37:53] 2025-10-12 09:37:53,216 [wrapper] apfmon messages muted
[2025-10-12 05:37:53] 2025-10-12 09:37:53,219 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:37:53] 2025-10-12 09:37:53,222 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:37:53]  *** Error codes and diagnostics ***
[2025-10-12 05:37:53]     "exeErrorCode": 0,
[2025-10-12 05:37:53]     "exeErrorDiag": "",
[2025-10-12 05:37:53]     "pilotErrorCode": 0,
[2025-10-12 05:37:53]     "pilotErrorDiag": "",
[2025-10-12 05:37:53]  *** Listing of results directory ***
[2025-10-12 05:37:53] total 408868
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 20:05 pilot3.tar.gz
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 20:46 queuedata.json
[2025-10-12 05:37:53] -rwx------ 1 boincer umatlas     36292 Oct 11 20:46 runpilot2-wrapper.sh
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas       100 Oct 12 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:37:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 04:29 run_atlas
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas       105 Oct 12 04:29 job.xml
[2025-10-12 05:37:53] -rw-r--r-- 2 boincer umatlas 222401143 Oct 12 04:29 EVNT.46676267._003111.pool.root.1
[2025-10-12 05:37:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:29 start_atlas.sh
[2025-10-12 05:37:53] drwxrwx--x 2 boincer umatlas      4096 Oct 12 04:29 shared
[2025-10-12 05:37:53] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 04:29 input.tar.gz
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas         0 Oct 12 04:29 boinc_lockfile
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 04:29 pandaJob.out
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas    975520 Oct 12 04:29 agis_schedconf.cvmfs.json
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas   1560580 Oct 12 04:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:37:53] drwx------ 5 boincer umatlas      4096 Oct 12 04:29 pilot3
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 05:27 init_data.xml
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas 190490268 Oct 12 05:36 HITS.46676269._068046.pool.root.1
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas       529 Oct 12 05:36 boinc_task_state.xml
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas      1047 Oct 12 05:37 memory_monitor_summary.json
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas    332362 Oct 12 05:37 log.46676269._068046.job.log.tgz.1
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas      7842 Oct 12 05:37 heartbeat.json
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 05:37 boinc_mmap_file
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas        27 Oct 12 05:37 wrapper_checkpoint.txt
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas        95 Oct 12 05:37 pilot_heartbeat.json
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas      4893 Oct 12 05:37 pilotlog.txt
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas    608689 Oct 12 05:37 log.46676269._068046.job.log.1
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas       357 Oct 12 05:37 output.list
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas       620 Oct 12 05:37 runtime_log
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas    962560 Oct 12 05:37 result.tar.gz
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas       658 Oct 12 05:37 wIrMDmdPzR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZtSMDm9SOeFn.diag
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 05:37 runtime_log.err
[2025-10-12 05:37:53] -rw-r--r-- 1 boincer umatlas     22116 Oct 12 05:37 stderr.txt
[2025-10-12 05:37:53] HITS file was successfully produced:
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas 190490268 Oct 12 05:36 shared/HITS.pool.root.1
[2025-10-12 05:37:53]  *** Contents of shared directory: ***
[2025-10-12 05:37:53] total 404740
[2025-10-12 05:37:53] -rw-r--r-- 2 boincer umatlas 222401143 Oct 12 04:29 ATLAS.root_0
[2025-10-12 05:37:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:29 start_atlas.sh
[2025-10-12 05:37:53] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 04:29 input.tar.gz
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas 190490268 Oct 12 05:36 HITS.pool.root.1
[2025-10-12 05:37:53] -rw------- 1 boincer umatlas    962560 Oct 12 05:37 result.tar.gz
05:37:54 (21668): run_atlas exited; CPU time 29908.114838
05:37:54 (21668): called boinc_finish(0)

</stderr_txt>
]]>

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