Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:47:41 (3587004): wrapper (7.7.26015): starting
19:47:41 (3587004): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 19:47:41] Arguments: --nthreads 6
[2025-10-12 19:47:41] Threads: 6
[2025-10-12 19:47:41] Checking for CVMFS
[2025-10-12 19:47:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:47:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:47:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:47:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:47:42] 2.11.5.0 3651556 4198 72688 151617 2 188 38694534 52428800 1858 130560 0 13042099 99.997 142062 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 19:47:42] CVMFS is ok
[2025-10-12 19:47:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:47:42] Checking for apptainer binary...
[2025-10-12 19:47:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:47:42] Running /usr/bin/apptainer --version
[2025-10-12 19:47:42] apptainer version 1.3.5-1.el9
[2025-10-12 19:47:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:47:42] testio008
[2025-10-12 19:47:42] apptainer works
[2025-10-12 19:47:42] Set ATHENA_PROC_NUMBER=6
[2025-10-12 19:47:42] Set ATHENA_CORE_NUMBER=6
[2025-10-12 19:47:42] Starting ATLAS job with PandaID=6838852655
[2025-10-12 19:47:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:53:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:53:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 20:53:03]  replicas=None
[2025-10-12 20:53:03]  scope=mc23_13p6TeV
[2025-10-12 20:53:03]  status=None
[2025-10-12 20:53:03]  status_code=0
[2025-10-12 20:53:03]  storage_token=
[2025-10-12 20:53:03]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6838852655/log.46676269._064437.job.log.tgz.1
[2025-10-12 20:53:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/10/6a/log.46676269._064437.job.log.tgz.1
[2025-10-12 20:53:03]  workdir=None
[2025-10-12 20:53:03] ]
[2025-10-12 20:53:03] 2025-10-12 11:52:09,022 | INFO     | transferring file log.46676269._064437.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6838852655/log.46676269._064437.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 20:53:03] 2025-10-12 11:52:09,022 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6838852655/log.46676269._064437.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._064437.job
[2025-10-12 20:53:03] 2025-10-12 11:52:09,035 | INFO     | adding to output.list: log.46676269._064437.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/10/6a/log.46676269._064437.job.log.tg
[2025-10-12 20:53:03] 2025-10-12 11:52:09,036 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:53:03] 2025-10-12 11:52:09,036 | INFO     | summary of transferred files:
[2025-10-12 20:53:03] 2025-10-12 11:52:09,036 | INFO     |  -- lfn=log.46676269._064437.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:53:03] 2025-10-12 11:52:09,036 | INFO     | stage-out finished correctly
[2025-10-12 20:53:03] 2025-10-12 11:52:09,691 | WARNING  | process 3597519 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 20:53:03] 2025-10-12 11:52:09,691 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838852655/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:53:03] 2025-10-12 11:52:09,761 | INFO     | number of running child processes to parent process 3597519: 1
[2025-10-12 20:53:03] 2025-10-12 11:52:09,761 | INFO     | maximum number of monitored processes: 6
[2025-10-12 20:53:03] 2025-10-12 11:52:10,176 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:53:03] 2025-10-12 11:52:10,238 | INFO     | time since job start (3859s) is within the limit (172800.0s)
[2025-10-12 20:53:03] 2025-10-12 11:52:12,255 | INFO     | time since job start (3861s) is within the limit (172800.0s)
[2025-10-12 20:53:03] 2025-10-12 11:52:12,264 | INFO     | monitor loop #283: job 0:6838852655 is in state 'finished'
[2025-10-12 20:53:03] 2025-10-12 11:52:12,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:53:03] 2025-10-12 11:52:13,013 | INFO     | job 6838852655 has state=finished
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | preparing for final server update for job 6838852655 in state='finished'
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | job 6838852655 has finished - writing final server update
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:53:03] 2025-10-12 11:52:13,014 | INFO     | executing command: lscpu
[2025-10-12 20:53:03] 2025-10-12 11:52:13,025 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:53:03] 2025-10-12 11:52:14,260 | INFO     | time since job start (3863s) is within the limit (172800.0s)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,641 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 20:53:03] 2025-10-12 11:52:14,643 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4100.01045
[2025-10-12 20:53:03] 2025-10-12 11:52:14,645 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838852655/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,645 | INFO     | extracted standard info from prmon json
[2025-10-12 20:53:03] 2025-10-12 11:52:14,645 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:53:03] 2025-10-12 11:52:14,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:53:03] 2025-10-12 11:52:14,645 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:53:03] 2025-10-12 11:52:14,645 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | sum of square deviations: 54432924.85714283
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | sum of deviations: -1619593607.1428573
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | mean x: 1760268073.642857
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | mean y: 2468615.1428571427
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | -- intersect: 52377367197.421394
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | intersect: 52377367197.421394
[2025-10-12 20:53:03] 2025-10-12 11:52:14,646 | INFO     | chi2: 0.027528226724043852
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | -- intersect: 52377367197.421394
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | current memory leak: -29.75 B/s (using 56 data points, chi2=0.03)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | could have reported an average CPU frequency of 3691 MHz (6 samples)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | ..............................
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . Timing measurements:
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . get job = 0 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . initial setup = 6 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . payload setup = 2 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . stage-in = 0 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . payload execution = 3835 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . stage-out = 0 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | . log creation = 0 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,647 | INFO     | ..............................
[2025-10-12 20:53:03] 2025-10-12 11:52:14,690 | INFO     | 
[2025-10-12 20:53:03] 2025-10-12 11:52:14,690 | INFO     | job summary report
[2025-10-12 20:53:03] 2025-10-12 11:52:14,690 | INFO     | --------------------------------------------------
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | PanDA job id: 6838852655
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | task id: 46676269
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | errors: (none)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | pilot state: finished 
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | transexitcode: 0
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | exeerrorcode: 0
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | exeerrordiag: 
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | exitcode: 0
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | exitmsg: OK
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | cpuconsumptiontime: 20508 s
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | nevents: 400
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | neventsw: 0
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | pid: 3597519
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | pgrp: 3597519
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | corecount: 6
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | event service: False
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 3842: 2374963, 3844: 2383961, 3845: 2384017, 3849: 2384339}
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | --------------------------------------------------
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | 
[2025-10-12 20:53:03] 2025-10-12 11:52:14,691 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | job 6838852655 has completed (purged errors)
[2025-10-12 20:53:03] 2025-10-12 11:52:14,700 | INFO     | overall cleanup function is called
[2025-10-12 20:53:03] 2025-10-12 11:52:15,706 | INFO     | --- collectZombieJob: --- 10, [3597519]
[2025-10-12 20:53:03] 2025-10-12 11:52:15,706 | INFO     | zombie collector waiting for pid 3597519
[2025-10-12 20:53:03] 2025-10-12 11:52:15,706 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:53:03] 2025-10-12 11:52:15,706 | INFO     | collected zombie processes
[2025-10-12 20:53:03] 2025-10-12 11:52:15,706 | INFO     | will attempt to kill all subprocesses of pid=3597519
[2025-10-12 20:53:03] 2025-10-12 11:52:15,743 | INFO     | process IDs to be killed: [3597519] (in reverse order)
[2025-10-12 20:53:03] 2025-10-12 11:52:15,762 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:53:03] 2025-10-12 11:52:15,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:53:03] 2025-10-12 11:52:15,764 | INFO     | did not find any defunct processes belonging to 3597519
[2025-10-12 20:53:03] 2025-10-12 11:52:15,765 | INFO     | did not find any defunct processes belonging to 3597519
[2025-10-12 20:53:03] 2025-10-12 11:52:15,765 | INFO     | ready for new job
[2025-10-12 20:53:03] 2025-10-12 11:52:15,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:53:03] 2025-10-12 11:52:15,766 | INFO     | ***************************************
[2025-10-12 20:53:03] 2025-10-12 11:52:15,766 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:53:03] 2025-10-12 11:52:15,766 | INFO     | ***************************************
[2025-10-12 20:53:03] 2025-10-12 11:52:15,766 | INFO     | 
[2025-10-12 20:53:03] 2025-10-12 11:52:15,767 | INFO     | architecture information:
[2025-10-12 20:53:03] 2025-10-12 11:52:15,767 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:53:03] 2025-10-12 11:52:15,773 | INFO     | cat /etc/os-release:
[2025-10-12 20:53:03] NAME="CentOS Linux"
[2025-10-12 20:53:03] VERSION="7 (Core)"
[2025-10-12 20:53:03] ID="centos"
[2025-10-12 20:53:03] ID_LIKE="rhel fedora"
[2025-10-12 20:53:03] VERSION_ID="7"
[2025-10-12 20:53:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:53:03] ANSI_COLOR="0;31"
[2025-10-12 20:53:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:53:03] HOME_URL="https://www.centos.org/"
[2025-10-12 20:53:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:53:03] 
[2025-10-12 20:53:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:53:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:53:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:53:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:53:03] 
[2025-10-12 20:53:03] 2025-10-12 11:52:15,773 | INFO     | ***************************************
[2025-10-12 20:53:03] 2025-10-12 11:52:16,275 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 20:53:03] 2025-10-12 11:52:16,282 | INFO     | sufficient remaining disk space (279957209088 B)
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | INFO     | update_server=False
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:53:03] 2025-10-12 11:52:16,283 | INFO     | aborting loop
[2025-10-12 20:53:03] 2025-10-12 11:52:16,666 | INFO     | all data control threads have been joined
[2025-10-12 20:53:03] 2025-10-12 11:52:16,742 | INFO     | all payload control threads have been joined
[2025-10-12 20:53:03] 2025-10-12 11:52:17,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:53:03] 2025-10-12 11:52:17,150 | INFO     | all job control threads have been joined
[2025-10-12 20:53:03] 2025-10-12 11:52:17,287 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,288 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,288 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,291 | INFO     | [job] validate thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,652 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,671 | INFO     | [data] control thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,701 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,731 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,747 | INFO     | [payload] control thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:17,833 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:18,155 | INFO     | [job] control thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:18,428 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:18,674 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:18,833 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:19,131 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:20,288 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:53:03] 2025-10-12 11:52:47,357 | INFO     | PID=3590786 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:53:03] 2025-10-12 11:52:47,358 | INFO     | .. there are 3 such processes running
[2025-10-12 20:53:03] 2025-10-12 11:52:47,358 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:53:03] 2025-10-12 11:52:47,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:53:03] 2025-10-12 11:52:47,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:53:03] 2025-10-12 11:52:57,138 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:53:03] 2025-10-12 11:52:58,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140434848712512)>', '<ExcThread(monitor, started 140434206611200)>']
[2025-10-12 20:53:03] 2025-10-12 11:52:59,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:53:03] 2025-10-12 11:52:59,418 | INFO     | [monitor] control thread has ended
[2025-10-12 20:53:03] 2025-10-12 11:53:03,755 | INFO     | all workflow threads have been joined
[2025-10-12 20:53:03] 2025-10-12 11:53:03,755 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:53:03] 2025-10-12 11:53:03,755 | INFO     | traces error code: 0
[2025-10-12 20:53:03] 2025-10-12 11:53:03,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:53:03] 2025-10-12 11:53:03,812 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:53:03] 2025-10-12 11:53:03,813 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:53:03] 2025-10-12 11:53:03,814 [wrapper] pilotpid: 3590786
[2025-10-12 20:53:03] 2025-10-12 11:53:03,815 [wrapper] Pilot exit status: 0
[2025-10-12 20:53:03] 2025-10-12 11:53:03,819 [wrapper] pandaids: 6838852655
[2025-10-12 20:53:03] 2025-10-12 11:53:03,830 [wrapper] cleanup supervisor_pilot 3655144 3590787
[2025-10-12 20:53:03] 2025-10-12 11:53:03,831 [wrapper] Test setup, not cleaning
[2025-10-12 20:53:03] 2025-10-12 11:53:03,832 [wrapper] apfmon messages muted
[2025-10-12 20:53:03] 2025-10-12 11:53:03,833 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:53:03] 2025-10-12 11:53:03,834 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:53:03]  *** Error codes and diagnostics ***
[2025-10-12 20:53:03]     "exeErrorCode": 0,
[2025-10-12 20:53:03]     "exeErrorDiag": "",
[2025-10-12 20:53:03]     "pilotErrorCode": 0,
[2025-10-12 20:53:03]     "pilotErrorDiag": "",
[2025-10-12 20:53:03]  *** Listing of results directory ***
[2025-10-12 20:53:03] total 407844
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc    557409 Oct 12 05:36 pilot3.tar.gz
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc      5112 Oct 12 05:38 queuedata.json
[2025-10-12 20:53:03] -rwx------. 1 boinc boinc     36292 Oct 12 05:38 runpilot2-wrapper.sh
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc       100 Oct 12 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:53:03] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 19:47 run_atlas
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc       105 Oct 12 19:47 job.xml
[2025-10-12 20:53:03] -rw-r--r--. 2 boinc boinc    569682 Oct 12 19:47 input.tar.gz
[2025-10-12 20:53:03] -rw-r--r--. 2 boinc boinc 218079115 Oct 12 19:47 EVNT.46676267._002590.pool.root.1
[2025-10-12 20:53:03] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:47 start_atlas.sh
[2025-10-12 20:53:03] drwxrwx--x. 2 boinc boinc        68 Oct 12 19:47 shared
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc         0 Oct 12 19:47 boinc_lockfile
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc      2550 Oct 12 19:47 pandaJob.out
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc    975520 Oct 12 19:47 agis_schedconf.cvmfs.json
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc   1560580 Oct 12 19:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:53:03] drwx------. 5 boinc boinc      4096 Oct 12 19:47 pilot3
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc      9516 Oct 12 20:45 init_data.xml
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc 193953202 Oct 12 20:51 HITS.46676269._064437.pool.root.1
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc       529 Oct 12 20:51 boinc_task_state.xml
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc      1021 Oct 12 20:52 memory_monitor_summary.json
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc    274726 Oct 12 20:52 log.46676269._064437.job.log.tgz.1
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc      7765 Oct 12 20:52 heartbeat.json
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc        95 Oct 12 20:52 pilot_heartbeat.json
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc      8192 Oct 12 20:52 boinc_mmap_file
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc        27 Oct 12 20:52 wrapper_checkpoint.txt
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc      4824 Oct 12 20:53 pilotlog.txt
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc    578300 Oct 12 20:53 log.46676269._064437.job.log.1
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc       357 Oct 12 20:53 output.list
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc       620 Oct 12 20:53 runtime_log
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc    870400 Oct 12 20:53 result.tar.gz
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc      8661 Oct 12 20:53 runtime_log.err
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc       642 Oct 12 20:53 rbfLDmuXvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkYhNDmYZXRin.diag
[2025-10-12 20:53:03] -rw-r--r--. 1 boinc boinc     21578 Oct 12 20:53 stderr.txt
[2025-10-12 20:53:03] HITS file was successfully produced:
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc 193953202 Oct 12 20:51 shared/HITS.pool.root.1
[2025-10-12 20:53:03]  *** Contents of shared directory: ***
[2025-10-12 20:53:03] total 403804
[2025-10-12 20:53:03] -rw-r--r--. 2 boinc boinc    569682 Oct 12 19:47 input.tar.gz
[2025-10-12 20:53:03] -rw-r--r--. 2 boinc boinc 218079115 Oct 12 19:47 ATLAS.root_0
[2025-10-12 20:53:03] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:47 start_atlas.sh
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc 193953202 Oct 12 20:51 HITS.pool.root.1
[2025-10-12 20:53:03] -rw-------. 1 boinc boinc    870400 Oct 12 20:53 result.tar.gz
20:53:05 (3587004): run_atlas exited; CPU time 20532.807351
20:53:05 (3587004): called boinc_finish(0)

</stderr_txt>
]]>

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