Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:53:13 (3465021): wrapper (7.7.26015): starting
18:53:13 (3465021): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 18:53:13] Arguments: --nthreads 4
[2025-10-12 18:53:13] Threads: 4
[2025-10-12 18:53:13] Checking for CVMFS
[2025-10-12 18:53:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:53:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:53:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:53:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:53:14] 2.9.2.0 2829015 1638 86832 151627 2 57 29730615 36864001 0 130560 0 1683486 99.993 57603 756 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 18:53:14] CVMFS is ok
[2025-10-12 18:53:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:53:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:53:14] Further information can be found at the LHC@home message board.
[2025-10-12 18:53:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:53:14] Checking for apptainer binary...
[2025-10-12 18:53:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:53:14] Running /usr/bin/apptainer --version
[2025-10-12 18:53:14] apptainer version 1.4.1-1.1
[2025-10-12 18:53:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:53:14] thA369a
[2025-10-12 18:53:14] apptainer works
[2025-10-12 18:53:14] Set ATHENA_PROC_NUMBER=4
[2025-10-12 18:53:14] Set ATHENA_CORE_NUMBER=4
[2025-10-12 18:53:14] Starting ATLAS job with PandaID=6837338937
[2025-10-12 18:53:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:53:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | job 6837338937 has completed (purged errors)
[2025-10-12 19:53:30] 2025-10-12 17:52:56,435 | INFO     | overall cleanup function is called
[2025-10-12 19:53:30] 2025-10-12 17:52:57,442 | INFO     | --- collectZombieJob: --- 10, [3475341]
[2025-10-12 19:53:30] 2025-10-12 17:52:57,442 | INFO     | zombie collector waiting for pid 3475341
[2025-10-12 19:53:30] 2025-10-12 17:52:57,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:53:30] 2025-10-12 17:52:57,442 | INFO     | collected zombie processes
[2025-10-12 19:53:30] 2025-10-12 17:52:57,442 | INFO     | will attempt to kill all subprocesses of pid=3475341
[2025-10-12 19:53:30] 2025-10-12 17:52:57,487 | INFO     | process IDs to be killed: [3475341] (in reverse order)
[2025-10-12 19:53:30] 2025-10-12 17:52:57,512 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:53:30] 2025-10-12 17:52:57,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:53:30] 2025-10-12 17:52:57,514 | INFO     | did not find any defunct processes belonging to 3475341
[2025-10-12 19:53:30] 2025-10-12 17:52:57,515 | INFO     | did not find any defunct processes belonging to 3475341
[2025-10-12 19:53:30] 2025-10-12 17:52:57,515 | INFO     | ready for new job
[2025-10-12 19:53:30] 2025-10-12 17:52:57,515 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:53:30] 2025-10-12 17:52:57,515 | INFO     | ***************************************
[2025-10-12 19:53:30] 2025-10-12 17:52:57,516 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:53:30] 2025-10-12 17:52:57,516 | INFO     | ***************************************
[2025-10-12 19:53:30] 2025-10-12 17:52:57,516 | INFO     | 
[2025-10-12 19:53:30] 2025-10-12 17:52:57,516 | INFO     | architecture information:
[2025-10-12 19:53:30] 2025-10-12 17:52:57,516 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:53:30] 2025-10-12 17:52:57,525 | INFO     | cat /etc/os-release:
[2025-10-12 19:53:30] NAME="CentOS Linux"
[2025-10-12 19:53:30] VERSION="7 (Core)"
[2025-10-12 19:53:30] ID="centos"
[2025-10-12 19:53:30] ID_LIKE="rhel fedora"
[2025-10-12 19:53:30] VERSION_ID="7"
[2025-10-12 19:53:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:53:30] ANSI_COLOR="0;31"
[2025-10-12 19:53:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:53:30] HOME_URL="https://www.centos.org/"
[2025-10-12 19:53:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:53:30] 
[2025-10-12 19:53:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:53:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:53:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:53:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:53:30] 
[2025-10-12 19:53:30] 2025-10-12 17:52:57,525 | INFO     | ***************************************
[2025-10-12 19:53:30] 2025-10-12 17:52:58,028 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:53:30] 2025-10-12 17:52:58,041 | INFO     | sufficient remaining disk space (229325668352 B)
[2025-10-12 19:53:30] 2025-10-12 17:52:58,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:53:30] 2025-10-12 17:52:58,041 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:53:30] 2025-10-12 17:52:58,041 | INFO     | update_server=False
[2025-10-12 19:53:30] 2025-10-12 17:52:58,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:53:30] 2025-10-12 17:52:58,075 | INFO     | all payload control threads have been joined
[2025-10-12 19:53:30] 2025-10-12 17:52:58,180 | INFO     | all data control threads have been joined
[2025-10-12 19:53:30] 2025-10-12 17:52:58,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:53:30] 2025-10-12 17:52:58,400 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:53:30] 2025-10-12 17:52:58,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:53:30] 2025-10-12 17:52:58,400 | INFO     | will abort loop
[2025-10-12 19:53:30] 2025-10-12 17:52:58,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:53:30] 2025-10-12 17:52:58,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:53:30] 2025-10-12 17:52:59,047 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:52:59,081 | INFO     | [payload] control thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:52:59,186 | INFO     | [data] control thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:52:59,213 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:52:59,406 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:52:59,585 | INFO     | all job control threads have been joined
[2025-10-12 19:53:30] 2025-10-12 17:52:59,733 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:52:59,928 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,293 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,528 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,529 | INFO     | [job] validate thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,536 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,591 | INFO     | [job] control thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,700 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:00,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:53:30] 2025-10-12 17:53:01,949 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:02,750 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:08,156 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:53:30] 2025-10-12 17:53:09,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:53:30] 2025-10-12 17:53:18,476 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-12 19:53:30] 2025-10-12 17:53:24,009 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:53:30] 2025-10-12 17:53:24,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870599857984)>', '<ExcThread(monitor, started 139869812672256)>']
[2025-10-12 19:53:30] 2025-10-12 17:53:28,972 | INFO     | PID=3468801 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:53:30] 2025-10-12 17:53:28,972 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:53:30] 2025-10-12 17:53:28,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:53:30] 2025-10-12 17:53:28,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:53:30] 2025-10-12 17:53:28,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:53:30] 2025-10-12 17:53:28,972 | INFO     | [monitor] control thread has ended
[2025-10-12 19:53:30] 2025-10-12 17:53:29,940 | INFO     | all workflow threads have been joined
[2025-10-12 19:53:30] 2025-10-12 17:53:29,940 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:53:30] 2025-10-12 17:53:29,941 | INFO     | traces error code: 0
[2025-10-12 19:53:30] 2025-10-12 17:53:29,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:53:30] 2025-10-12 17:53:29,994 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:53:30] 2025-10-12 17:53:29,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:53:30] 2025-10-12 17:53:29,999 [wrapper] pilotpid: 3468801
[2025-10-12 19:53:30] 2025-10-12 17:53:30,001 [wrapper] Pilot exit status: 0
[2025-10-12 19:53:30] 2025-10-12 17:53:30,009 [wrapper] pandaids: 6837338937
[2025-10-12 19:53:30] 2025-10-12 17:53:30,025 [wrapper] cleanup supervisor_pilot 3487318 3468802
[2025-10-12 19:53:30] 2025-10-12 17:53:30,027 [wrapper] Test setup, not cleaning
[2025-10-12 19:53:30] 2025-10-12 17:53:30,030 [wrapper] apfmon messages muted
[2025-10-12 19:53:30] 2025-10-12 17:53:30,032 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:53:30] 2025-10-12 17:53:30,034 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:53:30]  *** Error codes and diagnostics ***
[2025-10-12 19:53:30]     "exeErrorCode": 0,
[2025-10-12 19:53:30]     "exeErrorDiag": "",
[2025-10-12 19:53:30]     "pilotErrorCode": 0,
[2025-10-12 19:53:30]     "pilotErrorDiag": "",
[2025-10-12 19:53:30]  *** Listing of results directory ***
[2025-10-12 19:53:30] total 409272
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc    557409 Oct  9 14:43 pilot3.tar.gz
[2025-10-12 19:53:30] -rwx------ 1 boinc boinc     36292 Oct  9 14:50 runpilot2-wrapper.sh
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc      5112 Oct  9 14:50 queuedata.json
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:53:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:53 run_atlas
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:53 job.xml
[2025-10-12 19:53:30] -rw-r--r-- 2 boinc boinc 220792958 Oct 12 18:53 EVNT.46676267._000739.pool.root.1
[2025-10-12 19:53:30] -rw-r--r-- 2 boinc boinc    569675 Oct 12 18:53 input.tar.gz
[2025-10-12 19:53:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:53 start_atlas.sh
[2025-10-12 19:53:30] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:53 shared
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:53 boinc_setup_complete
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc      6443 Oct 12 18:53 init_data.xml
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:53 boinc_lockfile
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc      2549 Oct 12 18:53 pandaJob.out
[2025-10-12 19:53:30] -rw------- 1 boinc boinc    975528 Oct 12 18:53 agis_schedconf.cvmfs.json
[2025-10-12 19:53:30] -rw------- 1 boinc boinc   1560580 Oct 12 18:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:53:30] drwx------ 5 boinc boinc      4096 Oct 12 18:53 pilot3
[2025-10-12 19:53:30] -rw------- 1 boinc boinc 192824633 Oct 12 19:52 HITS.46676269._017842.pool.root.1
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:52 boinc_task_state.xml
[2025-10-12 19:53:30] -rw------- 1 boinc boinc        95 Oct 12 19:52 pilot_heartbeat.json
[2025-10-12 19:53:30] -rw------- 1 boinc boinc      1015 Oct 12 19:52 memory_monitor_summary.json
[2025-10-12 19:53:30] -rw------- 1 boinc boinc    250871 Oct 12 19:52 log.46676269._017842.job.log.tgz.1
[2025-10-12 19:53:30] -rw------- 1 boinc boinc      7752 Oct 12 19:52 heartbeat.json
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:53 boinc_mmap_file
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:53 wrapper_checkpoint.txt
[2025-10-12 19:53:30] -rw------- 1 boinc boinc      5010 Oct 12 19:53 pilotlog.txt
[2025-10-12 19:53:30] -rw------- 1 boinc boinc    539524 Oct 12 19:53 log.46676269._017842.job.log.1
[2025-10-12 19:53:30] -rw------- 1 boinc boinc       357 Oct 12 19:53 output.list
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:53 runtime_log
[2025-10-12 19:53:30] -rw------- 1 boinc boinc    808960 Oct 12 19:53 result.tar.gz
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc      8782 Oct 12 19:53 runtime_log.err
[2025-10-12 19:53:30] -rw------- 1 boinc boinc       658 Oct 12 19:53 gtrNDmVH5Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmztNMDm5lMxMn.diag
[2025-10-12 19:53:30] -rw-r--r-- 1 boinc boinc     12148 Oct 12 19:53 stderr.txt
[2025-10-12 19:53:30] HITS file was successfully produced:
[2025-10-12 19:53:30] -rw------- 1 boinc boinc 192824633 Oct 12 19:52 shared/HITS.pool.root.1
[2025-10-12 19:53:30]  *** Contents of shared directory: ***
[2025-10-12 19:53:30] total 405304
[2025-10-12 19:53:30] -rw-r--r-- 2 boinc boinc 220792958 Oct 12 18:53 ATLAS.root_0
[2025-10-12 19:53:30] -rw-r--r-- 2 boinc boinc    569675 Oct 12 18:53 input.tar.gz
[2025-10-12 19:53:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:53 start_atlas.sh
[2025-10-12 19:53:30] -rw------- 1 boinc boinc 192824633 Oct 12 19:52 HITS.pool.root.1
[2025-10-12 19:53:30] -rw------- 1 boinc boinc    808960 Oct 12 19:53 result.tar.gz
19:53:31 (3465021): run_atlas exited; CPU time 13432.459610
19:53:31 (3465021): called boinc_finish(0)

</stderr_txt>
]]>

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