Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:33:18 (13192): wrapper (7.7.26015): starting
04:33:18 (13192): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 04:33:18] Arguments: --nthreads 12
[2025-10-12 04:33:18] Threads: 12
[2025-10-12 04:33:18] Checking for CVMFS
[2025-10-12 04:33:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:33:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:33:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:33:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:33:19] 2.11.2.0 2925 222647 98400 151613 0 58 11005831 20275201 1 130560 1 107998440 99.984 12883704 12166 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 04:33:19] CVMFS is ok
[2025-10-12 04:33:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:33:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:33:19] Further information can be found at the LHC@home message board.
[2025-10-12 04:33:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:33:19] Checking for apptainer binary...
[2025-10-12 04:33:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:33:19] Running /usr/bin/apptainer --version
[2025-10-12 04:33:19] apptainer version 1.3.2-1.el7
[2025-10-12 04:33:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:33:20] c-205-10.aglt2.org
[2025-10-12 04:33:20] apptainer works
[2025-10-12 04:33:20] Set ATHENA_PROC_NUMBER=12
[2025-10-12 04:33:20] Set ATHENA_CORE_NUMBER=12
[2025-10-12 04:33:20] Starting ATLAS job with PandaID=6839319345
[2025-10-12 04:33:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:47:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:47:59]  lfn=log.46676269._070047.job.log.tgz.1
[2025-10-12 05:47:59]  mtime=0
[2025-10-12 05:47:59]  protocol_id=None
[2025-10-12 05:47:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 05:47:59]  replicas=None
[2025-10-12 05:47:59]  scope=mc23_13p6TeV
[2025-10-12 05:47:59]  status=None
[2025-10-12 05:47:59]  status_code=0
[2025-10-12 05:47:59]  storage_token=
[2025-10-12 05:47:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839319345/log.46676269._070047.job.log.tgz.1
[2025-10-12 05:47:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/79/log.46676269._070047.job.log.tgz.1
[2025-10-12 05:47:59]  workdir=None
[2025-10-12 05:47:59] ]
[2025-10-12 05:47:59] 2025-10-12 09:47:21,326 | INFO     | transferring file log.46676269._070047.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839319345/log.46676269._070047.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 05:47:59] 2025-10-12 09:47:21,326 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839319345/log.46676269._070047.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._070047.job
[2025-10-12 05:47:59] 2025-10-12 09:47:21,349 | INFO     | adding to output.list: log.46676269._070047.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/79/log.46676269._070047.job.log.tg
[2025-10-12 05:47:59] 2025-10-12 09:47:21,350 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 05:47:59] 2025-10-12 09:47:21,350 | INFO     | summary of transferred files:
[2025-10-12 05:47:59] 2025-10-12 09:47:21,350 | INFO     |  -- lfn=log.46676269._070047.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 05:47:59] 2025-10-12 09:47:21,351 | INFO     | stage-out finished correctly
[2025-10-12 05:47:59] 2025-10-12 09:47:21,436 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 05:47:59] 2025-10-12 09:47:21,592 | INFO     | time since job start (4426s) is within the limit (172800.0s)
[2025-10-12 05:47:59] 2025-10-12 09:47:21,655 | INFO     | job 6839319345 has state=finished
[2025-10-12 05:47:59] 2025-10-12 09:47:21,656 | INFO     | preparing for final server update for job 6839319345 in state='finished'
[2025-10-12 05:47:59] 2025-10-12 09:47:21,656 | INFO     | this job has now completed (state=finished)
[2025-10-12 05:47:59] 2025-10-12 09:47:21,656 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 05:47:59] 2025-10-12 09:47:21,656 | INFO     | log transfer has been attempted: DONE
[2025-10-12 05:47:59] 2025-10-12 09:47:21,657 | INFO     | job 6839319345 has finished - writing final server update
[2025-10-12 05:47:59] 2025-10-12 09:47:21,657 | INFO     | total number of processed events: 400 (read)
[2025-10-12 05:47:59] 2025-10-12 09:47:21,658 | INFO     | executing command: lscpu
[2025-10-12 05:47:59] 2025-10-12 09:47:21,684 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 05:47:59] 2025-10-12 09:47:22,398 | INFO     | monitor loop #331: job 0:6839319345 is in state 'finished'
[2025-10-12 05:47:59] 2025-10-12 09:47:22,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:47:59] 2025-10-12 09:47:23,598 | INFO     | time since job start (4428s) is within the limit (172800.0s)
[2025-10-12 05:47:59] 2025-10-12 09:47:24,901 | INFO     | monitor loop #332: job 0:6839319345 is in state 'finished'
[2025-10-12 05:47:59] 2025-10-12 09:47:24,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:47:59] 2025-10-12 09:47:25,604 | INFO     | time since job start (4430s) is within the limit (172800.0s)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,539 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 05:47:59] 2025-10-12 09:47:26,543 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 05:47:59] 2025-10-12 09:47:26,545 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839319345/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,546 | INFO     | extracted standard info from prmon json
[2025-10-12 05:47:59] 2025-10-12 09:47:26,547 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:47:59] 2025-10-12 09:47:26,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:47:59] 2025-10-12 09:47:26,547 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:47:59] 2025-10-12 09:47:26,547 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:47:59] 2025-10-12 09:47:26,549 | INFO     | fitting pss+swap vs Time
[2025-10-12 05:47:59] 2025-10-12 09:47:26,549 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,549 | INFO     | sum of deviations: -8367355238.0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,549 | INFO     | mean x: 1760260302.0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,549 | INFO     | mean y: 2813733.4615384615
[2025-10-12 05:47:59] 2025-10-12 09:47:26,550 | INFO     | -- intersect: 173004131830.9817
[2025-10-12 05:47:59] 2025-10-12 09:47:26,550 | INFO     | intersect: 173004131830.9817
[2025-10-12 05:47:59] 2025-10-12 09:47:26,550 | INFO     | chi2: 0.05410561713019391
[2025-10-12 05:47:59] 2025-10-12 09:47:26,550 | INFO     | -- intersect: 173004131830.9817
[2025-10-12 05:47:59] 2025-10-12 09:47:26,550 | INFO     | current memory leak: -98.28 B/s (using 65 data points, chi2=0.05)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,550 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | ..............................
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . Timing measurements:
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . get job = 0 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . initial setup = 2 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . payload setup = 7 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . stage-in = 0 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . payload execution = 4397 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . stage-out = 0 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | . log creation = 0 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,551 | INFO     | ..............................
[2025-10-12 05:47:59] 2025-10-12 09:47:26,635 | INFO     | 
[2025-10-12 05:47:59] 2025-10-12 09:47:26,635 | INFO     | job summary report
[2025-10-12 05:47:59] 2025-10-12 09:47:26,635 | INFO     | --------------------------------------------------
[2025-10-12 05:47:59] 2025-10-12 09:47:26,635 | INFO     | PanDA job id: 6839319345
[2025-10-12 05:47:59] 2025-10-12 09:47:26,635 | INFO     | task id: 46676269
[2025-10-12 05:47:59] 2025-10-12 09:47:26,636 | INFO     | errors: (none)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,636 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 05:47:59] 2025-10-12 09:47:26,636 | INFO     | pilot state: finished 
[2025-10-12 05:47:59] 2025-10-12 09:47:26,636 | INFO     | transexitcode: 0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,636 | INFO     | exeerrorcode: 0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,636 | INFO     | exeerrordiag: 
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | exitcode: 0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | exitmsg: OK
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | cpuconsumptiontime: 45311 s
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | nevents: 400
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | neventsw: 0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | pid: 23220
[2025-10-12 05:47:59] 2025-10-12 09:47:26,637 | INFO     | pgrp: 23220
[2025-10-12 05:47:59] 2025-10-12 09:47:26,638 | INFO     | corecount: 12
[2025-10-12 05:47:59] 2025-10-12 09:47:26,638 | INFO     | event service: False
[2025-10-12 05:47:59] 2025-10-12 09:47:26,638 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4408: 2375252, 4410: 2384434, 4415: 2384572}
[2025-10-12 05:47:59] 2025-10-12 09:47:26,638 | INFO     | --------------------------------------------------
[2025-10-12 05:47:59] 2025-10-12 09:47:26,638 | INFO     | 
[2025-10-12 05:47:59] 2025-10-12 09:47:26,639 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 05:47:59] 2025-10-12 09:47:26,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,665 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,665 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:47:59] 2025-10-12 09:47:26,667 | INFO     | job 6839319345 has completed (purged errors)
[2025-10-12 05:47:59] 2025-10-12 09:47:26,668 | INFO     | overall cleanup function is called
[2025-10-12 05:47:59] 2025-10-12 09:47:27,675 | INFO     | --- collectZombieJob: --- 10, [23220]
[2025-10-12 05:47:59] 2025-10-12 09:47:27,675 | INFO     | zombie collector waiting for pid 23220
[2025-10-12 05:47:59] 2025-10-12 09:47:27,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:47:59] 2025-10-12 09:47:27,676 | INFO     | collected zombie processes
[2025-10-12 05:47:59] 2025-10-12 09:47:27,676 | INFO     | will attempt to kill all subprocesses of pid=23220
[2025-10-12 05:47:59] 2025-10-12 09:47:27,767 | INFO     | process IDs to be killed: [23220] (in reverse order)
[2025-10-12 05:47:59] 2025-10-12 09:47:27,821 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:47:59] 2025-10-12 09:47:27,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:47:59] 2025-10-12 09:47:27,825 | INFO     | did not find any defunct processes belonging to 23220
[2025-10-12 05:47:59] 2025-10-12 09:47:27,828 | INFO     | did not find any defunct processes belonging to 23220
[2025-10-12 05:47:59] 2025-10-12 09:47:27,828 | INFO     | ready for new job
[2025-10-12 05:47:59] 2025-10-12 09:47:27,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:47:59] 2025-10-12 09:47:27,829 | INFO     | ***************************************
[2025-10-12 05:47:59] 2025-10-12 09:47:27,829 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 05:47:59] 2025-10-12 09:47:27,829 | INFO     | ***************************************
[2025-10-12 05:47:59] 2025-10-12 09:47:27,830 | INFO     | 
[2025-10-12 05:47:59] 2025-10-12 09:47:27,830 | INFO     | architecture information:
[2025-10-12 05:47:59] 2025-10-12 09:47:27,831 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:47:59] 2025-10-12 09:47:27,845 | INFO     | cat /etc/os-release:
[2025-10-12 05:47:59] NAME="CentOS Linux"
[2025-10-12 05:47:59] VERSION="7 (Core)"
[2025-10-12 05:47:59] ID="centos"
[2025-10-12 05:47:59] ID_LIKE="rhel fedora"
[2025-10-12 05:47:59] VERSION_ID="7"
[2025-10-12 05:47:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:47:59] ANSI_COLOR="0;31"
[2025-10-12 05:47:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:47:59] HOME_URL="https://www.centos.org/"
[2025-10-12 05:47:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:47:59] 
[2025-10-12 05:47:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:47:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:47:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:47:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:47:59] 
[2025-10-12 05:47:59] 2025-10-12 09:47:27,845 | INFO     | ***************************************
[2025-10-12 05:47:59] 2025-10-12 09:47:28,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 05:47:59] 2025-10-12 09:47:28,366 | INFO     | sufficient remaining disk space (29371662336 B)
[2025-10-12 05:47:59] 2025-10-12 09:47:28,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:47:59] 2025-10-12 09:47:28,366 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:47:59] 2025-10-12 09:47:28,367 | INFO     | update_server=False
[2025-10-12 05:47:59] 2025-10-12 09:47:28,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:47:59] 2025-10-12 09:47:28,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:47:59] 2025-10-12 09:47:28,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:47:59] 2025-10-12 09:47:28,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:47:59] 2025-10-12 09:47:28,409 | INFO     | aborting loop
[2025-10-12 05:47:59] 2025-10-12 09:47:28,410 | INFO     | all job control threads have been joined
[2025-10-12 05:47:59] 2025-10-12 09:47:29,121 | INFO     | all data control threads have been joined
[2025-10-12 05:47:59] 2025-10-12 09:47:29,372 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:29,373 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:29,415 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:29,415 | INFO     | [job] control thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:29,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:47:59] 2025-10-12 09:47:29,707 | INFO     | all payload control threads have been joined
[2025-10-12 05:47:59] 2025-10-12 09:47:29,893 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,055 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,099 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,127 | INFO     | [data] control thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,489 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,526 | INFO     | [job] validate thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,599 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,708 | INFO     | [payload] control thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,738 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:30,846 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:31,453 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:32,374 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:47:59] 2025-10-12 09:47:42,225 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:47:59] 2025-10-12 09:47:43,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140400209319744)>', '<ExcThread(monitor, started 140399637153536)>']
[2025-10-12 05:47:59] 2025-10-12 09:47:48,810 | INFO     | all workflow threads have been joined
[2025-10-12 05:47:59] 2025-10-12 09:47:48,810 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:47:59] 2025-10-12 09:47:48,817 | INFO     | traces error code: 0
[2025-10-12 05:47:59] 2025-10-12 09:47:48,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:47:59] 2025-10-12 09:47:58,824 | INFO     | PID=16856 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 05:47:59] 2025-10-12 09:47:58,825 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:47:59] 2025-10-12 09:47:58,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:47:59] 2025-10-12 09:47:58,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:47:59] 2025-10-12 09:47:58,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:47:59] 2025-10-12 09:47:58,826 | INFO     | [monitor] control thread has ended
[2025-10-12 05:47:59] 2025-10-12 09:47:58,917 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:47:59] 2025-10-12 09:47:58,921 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:47:59] 2025-10-12 09:47:58,925 [wrapper] pilotpid: 16856
[2025-10-12 05:47:59] 2025-10-12 09:47:58,928 [wrapper] Pilot exit status: 0
[2025-10-12 05:47:59] 2025-10-12 09:47:58,944 [wrapper] pandaids: 6839319345
[2025-10-12 05:47:59] 2025-10-12 09:47:58,981 [wrapper] cleanup supervisor_pilot 27710 16857
[2025-10-12 05:47:59] 2025-10-12 09:47:58,986 [wrapper] Test setup, not cleaning
[2025-10-12 05:47:59] 2025-10-12 09:47:58,989 [wrapper] apfmon messages muted
[2025-10-12 05:47:59] 2025-10-12 09:47:58,993 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:47:59] 2025-10-12 09:47:58,997 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:47:59]  *** Error codes and diagnostics ***
[2025-10-12 05:47:59]     "exeErrorCode": 0,
[2025-10-12 05:47:59]     "exeErrorDiag": "",
[2025-10-12 05:47:59]     "pilotErrorCode": 0,
[2025-10-12 05:47:59]     "pilotErrorDiag": "",
[2025-10-12 05:47:59]  *** Listing of results directory ***
[2025-10-12 05:47:59] total 405492
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 22:56 pilot3.tar.gz
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 23:17 queuedata.json
[2025-10-12 05:47:59] -rwx------ 1 boincer umatlas     36292 Oct 11 23:17 runpilot2-wrapper.sh
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas       100 Oct 12 04:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:47:59] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 04:33 run_atlas
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas       105 Oct 12 04:33 job.xml
[2025-10-12 05:47:59] -rw-r--r-- 2 boincer umatlas 220483396 Oct 12 04:33 EVNT.46676267._003216.pool.root.1
[2025-10-12 05:47:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:33 start_atlas.sh
[2025-10-12 05:47:59] drwxrwx--x 2 boincer umatlas      4096 Oct 12 04:33 shared
[2025-10-12 05:47:59] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 04:33 input.tar.gz
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas         0 Oct 12 04:33 boinc_lockfile
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 04:33 pandaJob.out
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas    975520 Oct 12 04:33 agis_schedconf.cvmfs.json
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas   1560580 Oct 12 04:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:47:59] drwx------ 5 boincer umatlas      4096 Oct 12 04:33 pilot3
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas 188775934 Oct 12 05:46 HITS.46676269._070047.pool.root.1
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas       529 Oct 12 05:46 boinc_task_state.xml
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 05:47 init_data.xml
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas      1049 Oct 12 05:47 memory_monitor_summary.json
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas    387475 Oct 12 05:47 log.46676269._070047.job.log.tgz.1
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas      7861 Oct 12 05:47 heartbeat.json
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 05:47 boinc_mmap_file
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas        27 Oct 12 05:47 wrapper_checkpoint.txt
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas        95 Oct 12 05:47 pilot_heartbeat.json
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas       745 Oct 12 05:47 pilotlog.txt
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas    643321 Oct 12 05:47 log.46676269._070047.job.log.1
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas       357 Oct 12 05:47 output.list
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas       620 Oct 12 05:47 runtime_log
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas   1054720 Oct 12 05:47 result.tar.gz
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas       659 Oct 12 05:47 xY6KDmRl1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmS5SMDm9VPEon.diag
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 05:47 runtime_log.err
[2025-10-12 05:47:59] -rw-r--r-- 1 boincer umatlas     21624 Oct 12 05:47 stderr.txt
[2025-10-12 05:47:59] HITS file was successfully produced:
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas 188775934 Oct 12 05:46 shared/HITS.pool.root.1
[2025-10-12 05:47:59]  *** Contents of shared directory: ***
[2025-10-12 05:47:59] total 401280
[2025-10-12 05:47:59] -rw-r--r-- 2 boincer umatlas 220483396 Oct 12 04:33 ATLAS.root_0
[2025-10-12 05:47:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:33 start_atlas.sh
[2025-10-12 05:47:59] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 04:33 input.tar.gz
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas 188775934 Oct 12 05:46 HITS.pool.root.1
[2025-10-12 05:47:59] -rw------- 1 boincer umatlas   1054720 Oct 12 05:47 result.tar.gz
05:48:00 (13192): run_atlas exited; CPU time 45237.344618
05:48:00 (13192): called boinc_finish(0)

</stderr_txt>
]]>

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