Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 12:26:23 (220777): vboxwrapper version 26210
2025-10-12 12:26:23 (220777): BOINC client version: 7.18.1
2025-10-12 12:26:25 (220777): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-10-12 12:26:25 (220777): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 12:26:25 (220777): Create VM. (boinc_05202d1e5613845e, slot#3)
2025-10-12 12:26:26 (220777): Setting Memory Size for VM. (4600MB)
2025-10-12 12:26:26 (220777): Setting CPU Count for VM. (6)
2025-10-12 12:26:26 (220777): Setting Chipset Options for VM.
2025-10-12 12:26:26 (220777): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 12:26:26 (220777): Setting Boot Options for VM.
2025-10-12 12:26:26 (220777): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 12:26:26 (220777): Enabling VM Network Access.
2025-10-12 12:26:26 (220777): Disabling USB Support for VM.
2025-10-12 12:26:26 (220777): Disabling COM Port Support for VM.
2025-10-12 12:26:26 (220777): Disabling LPT Port Support for VM.
2025-10-12 12:26:27 (220777): Disabling Audio Support for VM.
2025-10-12 12:26:27 (220777): Disabling Clipboard Support for VM.
2025-10-12 12:26:27 (220777): Disabling Drag and Drop Support for VM.
2025-10-12 12:26:27 (220777): Adding storage controller(s) to VM.
2025-10-12 12:26:27 (220777): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 12:26:27 (220777): Adding VirtualBox Guest Additions to VM.
2025-10-12 12:26:27 (220777): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 12:26:27 (220777): forwarding host port 55979 to guest port 80
2025-10-12 12:26:27 (220777): Enabling remote desktop for VM.
2025-10-12 12:26:27 (220777): Required extension pack not installed, remote desktop not enabled.
2025-10-12 12:26:27 (220777): Enabling shared directory for VM.
2025-10-12 12:26:27 (220777): Starting VM using VBoxManage interface. (boinc_05202d1e5613845e, slot#3)
2025-10-12 12:26:28 (220777): Successfully started VM. (PID = '221383')
2025-10-12 12:26:28 (220777): Reporting VM Process ID to BOINC.
2025-10-12 12:26:28 (220777): Guest Log: BIOS: VirtualBox 6.1.50
2025-10-12 12:26:28 (220777): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 12:26:28 (220777): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 12:26:28 (220777): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 12:26:28 (220777): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 12:26:28 (220777): Detected: Web Application Enabled (http://localhost:55979)
2025-10-12 12:26:28 (220777): Preference change detected
2025-10-12 12:26:28 (220777): Setting CPU throttle for VM. (90%)
2025-10-12 12:26:28 (220777): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 12:26:30 (220777): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 12:26:30 (220777): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 12:26:32 (220777): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 12:26:32 (220777): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 12:26:32 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 12:26:32 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 12:26:33 (220777): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 12:26:42 (220777): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 12:26:42 (220777): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-12 12:26:46 (220777): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000183 main     Log opened 2025-10-12T09:26:44.064454000Z
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000328 main     OS Product: Linux
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000373 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000408 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000442 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000443 main     Process ID: 1337
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.000444 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 12:26:46 (220777): Guest Log: 00:00:00.001394 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 12:26:46 (220777): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 12:26:46 (220777): Guest Log: [INFO] Mounting shared directory
2025-10-12 12:26:46 (220777): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 12:26:55 (220777): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 12:26:55 (220777): Guest Log: [INFO] Detected branch: prod
2025-10-12 12:26:55 (220777): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 12:26:55 (220777): Guest Log: Copying input files
2025-10-12 12:26:56 (220777): Guest Log: Copied input files into RunAtlas.
2025-10-12 12:26:57 (220777): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-10-12 12:27:15 (220777): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 12:27:15 (220777): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 12:27:15 (220777): Guest Log: 2.6.3.0 1617 0 31624 151615 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-10-12 12:27:15 (220777): Guest Log: copied the webapp to /var/www
2025-10-12 12:27:16 (220777): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-12 12:27:16 (220777): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-12 12:27:16 (220777): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 12:27:16 (220777): Guest Log:  *** Starting ATLAS job. (PandaID=6837338954 taskID=46676269) ***
2025-10-12 14:05:32 (220777): Status Report: Elapsed Time: '6000.000000'
2025-10-12 14:05:32 (220777): Status Report: CPU Time: '29973.600000'
2025-10-12 14:29:52 (220777): Guest Log:  *** Job finished ***
2025-10-12 14:29:52 (220777): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:32,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:32,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:44,944 | INFO     | [monitor] cgroup control has ended
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:45,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139920415450944)>', '<ExcThread(monitor, started 139919741667072)>']
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:45,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:45,362 | INFO     | [monitor] control thread has ended
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,013 | INFO     | all workflow threads have been joined
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,013 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,014 | INFO     | traces error code: 0
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,093 [wrapper] ==== pilot stdout END ====
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,097 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,102 [wrapper] pilotpid: 6026
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,106 [wrapper] Pilot exit status: 0
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,150 [wrapper] pandaids: 6837338954
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,177 [wrapper] cleanup supervisor_pilot  5062 6027
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,183 [wrapper] Test setup, not cleaning
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,188 [wrapper] apfmon messages muted
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,193 [wrapper] ==== wrapper stdout END ====
2025-10-12 14:29:52 (220777): Guest Log: 2025-10-12 11:29:50,198 [wrapper] ==== wrapper stderr END ====
2025-10-12 14:29:52 (220777): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 14:29:52 (220777): Guest Log:     "exeErrorCode": 0,
2025-10-12 14:29:52 (220777): Guest Log:     "exeErrorDiag": "",
2025-10-12 14:29:52 (220777): Guest Log:     "pilotErrorCode": 0,
2025-10-12 14:29:52 (220777): Guest Log:     "pilotErrorDiag": "",
2025-10-12 14:29:52 (220777): Guest Log:  *** Listing of results directory ***
2025-10-12 14:29:52 (220777): Guest Log: total 196932
2025-10-12 14:29:52 (220777): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 12:53 runpilot2-wrapper.sh
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 12:53 queuedata.json
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 12:53 pilot3.tar.gz
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas      7476 Oct 12 09:26 init_data.xml
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas    569674 Oct 12 09:26 input.tar.gz
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 12 09:26 start_atlas.sh
2025-10-12 14:29:52 (220777): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 09:26 EVNT.46676267._000740.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 09:27 pandaJob.out
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas    975536 Oct 12 09:27 agis_schedconf.cvmfs.json
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 09:27 agis_ddmendpoints.agis.ALL.json
2025-10-12 14:29:52 (220777): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 09:27 pilot3
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas 195224450 Oct 12 11:28 HITS.46676269._017859.pool.root.1
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 12 11:28 memory_monitor_summary.json
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas    321334 Oct 12 11:28 log.46676269._017859.job.log.tgz.1
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas      7821 Oct 12 11:29 heartbeat.json
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 11:29 pilot_heartbeat.json
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 12 11:29 pilotlog.txt
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas    977888 Oct 12 11:29 log.46676269._017859.job.log.1
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 11:29 output.list
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 11:29 runtime_log
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas   1320960 Oct 12 11:29 result.tar.gz
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 atlas atlas      8696 Oct 12 11:29 runtime_log.err
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas       673 Oct 12 11:29 kiDODmbK5Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMuNMDmtUMYdn.diag
2025-10-12 14:29:52 (220777): Guest Log: Looking for outputfile HITS.46676269._017859.pool.root.1
2025-10-12 14:29:52 (220777): Guest Log: HITS file was successfully produced
2025-10-12 14:29:52 (220777): Guest Log: -rw-------. 1 atlas atlas 195224450 Oct 12 11:28 /home/atlas/RunAtlas/HITS.46676269._017859.pool.root.1
2025-10-12 14:29:52 (220777): Guest Log: Successfully finished the ATLAS job!
2025-10-12 14:29:52 (220777): Guest Log: Copying the results back to the shared directory!
2025-10-12 14:29:52 (220777): Guest Log:  *** Contents of shared directory: ***
2025-10-12 14:29:52 (220777): Guest Log: total 215777
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 root root 219741779 Oct 12 09:26 ATLAS.root_0
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 root root      7476 Oct 12 09:26 init_data.xml
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 root root    569674 Oct 12 09:26 input.tar.gz
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 root root   1320960 Oct 12 11:29 result.tar.gz
2025-10-12 14:29:52 (220777): Guest Log: -rw-r--r--. 1 root root     15120 Oct 12 09:26 start_atlas.sh
2025-10-12 14:29:52 (220777): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 14:29:52 (220777): VM Completion File Detected.
2025-10-12 14:29:52 (220777): Powering off VM.
2025-10-12 14:29:53 (220777): Successfully stopped VM.
2025-10-12 14:29:53 (220777): Deregistering VM. (boinc_05202d1e5613845e, slot#3)
2025-10-12 14:29:53 (220777): Removing network bandwidth throttle group from VM.
2025-10-12 14:29:53 (220777): Removing VM from VirtualBox.
2025-10-12 14:29:58 (220777): called boinc_finish(0)

</stderr_txt>
]]>

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