Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:25:07 (13659): wrapper (7.7.26015): starting
04:25:07 (13659): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 04:25:07] Arguments: --nthreads 12
[2025-10-12 04:25:07] Threads: 12
[2025-10-12 04:25:07] Checking for CVMFS
[2025-10-12 04:25:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:25:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:25:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:25:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:25:07] 2.11.2.0 2987 222592 97404 151613 1 56 14214434 20275201 1 130560 1 108232872 99.984 13384111 12224 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 04:25:07] CVMFS is ok
[2025-10-12 04:25:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:25:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:25:07] Further information can be found at the LHC@home message board.
[2025-10-12 04:25:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:25:07] Checking for apptainer binary...
[2025-10-12 04:25:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:25:07] Running /usr/bin/apptainer --version
[2025-10-12 04:25:07] apptainer version 1.3.2-1.el7
[2025-10-12 04:25:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:25:08] c-205-19.aglt2.org
[2025-10-12 04:25:08] apptainer works
[2025-10-12 04:25:08] Set ATHENA_PROC_NUMBER=12
[2025-10-12 04:25:08] Set ATHENA_CORE_NUMBER=12
[2025-10-12 04:25:08] Starting ATLAS job with PandaID=6839318327
[2025-10-12 04:25:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:37:54]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:37:54]  replicas=None
[2025-10-12 05:37:54]  scope=mc23_13p6TeV
[2025-10-12 05:37:54]  status=None
[2025-10-12 05:37:54]  status_code=0
[2025-10-12 05:37:54]  storage_token=
[2025-10-12 05:37:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839318327/log.46676269._069748.job.log.tgz.1
[2025-10-12 05:37:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/ae/log.46676269._069748.job.log.tgz.1
[2025-10-12 05:37:54]  workdir=None
[2025-10-12 05:37:54] ]
[2025-10-12 05:37:54] 2025-10-12 09:37:15,356 | INFO     | transferring file log.46676269._069748.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839318327/log.46676269._069748.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 05:37:54] 2025-10-12 09:37:15,356 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839318327/log.46676269._069748.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._069748.job
[2025-10-12 05:37:54] 2025-10-12 09:37:15,380 | INFO     | adding to output.list: log.46676269._069748.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/ae/log.46676269._069748.job.log.tg
[2025-10-12 05:37:54] 2025-10-12 09:37:15,381 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 05:37:54] 2025-10-12 09:37:15,381 | INFO     | summary of transferred files:
[2025-10-12 05:37:54] 2025-10-12 09:37:15,381 | INFO     |  -- lfn=log.46676269._069748.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 05:37:54] 2025-10-12 09:37:15,381 | INFO     | stage-out finished correctly
[2025-10-12 05:37:54] 2025-10-12 09:37:15,402 | INFO     | time since job start (4312s) is within the limit (172800.0s)
[2025-10-12 05:37:54] 2025-10-12 09:37:15,671 | INFO     | monitor loop #320: job 0:6839318327 is in state 'finished'
[2025-10-12 05:37:54] 2025-10-12 09:37:15,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:37:54] 2025-10-12 09:37:17,164 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 05:37:54] 2025-10-12 09:37:17,413 | INFO     | time since job start (4314s) is within the limit (172800.0s)
[2025-10-12 05:37:54] 2025-10-12 09:37:17,474 | INFO     | job 6839318327 has state=finished
[2025-10-12 05:37:54] 2025-10-12 09:37:17,474 | INFO     | preparing for final server update for job 6839318327 in state='finished'
[2025-10-12 05:37:54] 2025-10-12 09:37:17,475 | INFO     | this job has now completed (state=finished)
[2025-10-12 05:37:54] 2025-10-12 09:37:17,475 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 05:37:54] 2025-10-12 09:37:17,475 | INFO     | log transfer has been attempted: DONE
[2025-10-12 05:37:54] 2025-10-12 09:37:17,475 | INFO     | job 6839318327 has finished - writing final server update
[2025-10-12 05:37:54] 2025-10-12 09:37:17,476 | INFO     | total number of processed events: 400 (read)
[2025-10-12 05:37:54] 2025-10-12 09:37:17,476 | INFO     | executing command: lscpu
[2025-10-12 05:37:54] 2025-10-12 09:37:17,503 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 05:37:54] 2025-10-12 09:37:18,174 | INFO     | monitor loop #321: job 0:6839318327 is in state 'finished'
[2025-10-12 05:37:54] 2025-10-12 09:37:18,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:37:54] 2025-10-12 09:37:19,418 | INFO     | time since job start (4316s) is within the limit (172800.0s)
[2025-10-12 05:37:54] 2025-10-12 09:37:20,677 | INFO     | monitor loop #322: job 0:6839318327 is in state 'finished'
[2025-10-12 05:37:54] 2025-10-12 09:37:20,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:37:54] 2025-10-12 09:37:21,427 | INFO     | time since job start (4318s) is within the limit (172800.0s)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,297 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 05:37:54] 2025-10-12 09:37:22,301 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 05:37:54] 2025-10-12 09:37:22,304 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839318327/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,304 | INFO     | extracted standard info from prmon json
[2025-10-12 05:37:54] 2025-10-12 09:37:22,305 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:37:54] 2025-10-12 09:37:22,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:37:54] 2025-10-12 09:37:22,305 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:37:54] 2025-10-12 09:37:22,305 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:37:54] 2025-10-12 09:37:22,307 | INFO     | fitting pss+swap vs Time
[2025-10-12 05:37:54] 2025-10-12 09:37:22,308 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 05:37:54] 2025-10-12 09:37:22,308 | INFO     | sum of deviations: -7190213441.5
[2025-10-12 05:37:54] 2025-10-12 09:37:22,308 | INFO     | mean x: 1760259778.5
[2025-10-12 05:37:54] 2025-10-12 09:37:22,308 | INFO     | mean y: 2874052.046875
[2025-10-12 05:37:54] 2025-10-12 09:37:22,308 | INFO     | -- intersect: 155745052145.08127
[2025-10-12 05:37:54] 2025-10-12 09:37:22,308 | INFO     | intersect: 155745052145.08127
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | chi2: 0.06265314129158427
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | -- intersect: 155745052145.08127
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | current memory leak: -88.48 B/s (using 64 data points, chi2=0.06)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | could have reported an average CPU frequency of 2061 MHz (6 samples)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | ..............................
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | . Timing measurements:
[2025-10-12 05:37:54] 2025-10-12 09:37:22,309 | INFO     | . get job = 0 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | . initial setup = 2 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | . payload setup = 7 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | . stage-in = 0 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | . payload execution = 4284 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | . stage-out = 0 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | . log creation = 0 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,310 | INFO     | ..............................
[2025-10-12 05:37:54] 2025-10-12 09:37:22,391 | INFO     | 
[2025-10-12 05:37:54] 2025-10-12 09:37:22,392 | INFO     | job summary report
[2025-10-12 05:37:54] 2025-10-12 09:37:22,392 | INFO     | --------------------------------------------------
[2025-10-12 05:37:54] 2025-10-12 09:37:22,392 | INFO     | PanDA job id: 6839318327
[2025-10-12 05:37:54] 2025-10-12 09:37:22,392 | INFO     | task id: 46676269
[2025-10-12 05:37:54] 2025-10-12 09:37:22,392 | INFO     | errors: (none)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 05:37:54] 2025-10-12 09:37:22,393 | INFO     | pilot state: finished 
[2025-10-12 05:37:54] 2025-10-12 09:37:22,393 | INFO     | transexitcode: 0
[2025-10-12 05:37:54] 2025-10-12 09:37:22,393 | INFO     | exeerrorcode: 0
[2025-10-12 05:37:54] 2025-10-12 09:37:22,393 | INFO     | exeerrordiag: 
[2025-10-12 05:37:54] 2025-10-12 09:37:22,393 | INFO     | exitcode: 0
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | exitmsg: OK
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | cpuconsumptiontime: 45582 s
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | nevents: 400
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | neventsw: 0
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | pid: 24629
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | pgrp: 24629
[2025-10-12 05:37:54] 2025-10-12 09:37:22,394 | INFO     | corecount: 12
[2025-10-12 05:37:54] 2025-10-12 09:37:22,395 | INFO     | event service: False
[2025-10-12 05:37:54] 2025-10-12 09:37:22,395 | INFO     | sizes: {0: 2348858, 1: 2348886, 5: 2349148, 11: 2349204, 4295: 2375253, 4296: 2384251, 4297: 2384435, 4302: 2384629}
[2025-10-12 05:37:54] 2025-10-12 09:37:22,395 | INFO     | --------------------------------------------------
[2025-10-12 05:37:54] 2025-10-12 09:37:22,395 | INFO     | 
[2025-10-12 05:37:54] 2025-10-12 09:37:22,395 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 05:37:54] 2025-10-12 09:37:22,419 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,420 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,420 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,420 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,420 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,422 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:37:54] 2025-10-12 09:37:22,423 | INFO     | job 6839318327 has completed (purged errors)
[2025-10-12 05:37:54] 2025-10-12 09:37:22,423 | INFO     | overall cleanup function is called
[2025-10-12 05:37:54] 2025-10-12 09:37:23,432 | INFO     | --- collectZombieJob: --- 10, [24629]
[2025-10-12 05:37:54] 2025-10-12 09:37:23,432 | INFO     | zombie collector waiting for pid 24629
[2025-10-12 05:37:54] 2025-10-12 09:37:23,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:37:54] 2025-10-12 09:37:23,432 | INFO     | collected zombie processes
[2025-10-12 05:37:54] 2025-10-12 09:37:23,432 | INFO     | will attempt to kill all subprocesses of pid=24629
[2025-10-12 05:37:54] 2025-10-12 09:37:23,523 | INFO     | process IDs to be killed: [24629] (in reverse order)
[2025-10-12 05:37:54] 2025-10-12 09:37:23,576 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:37:54] 2025-10-12 09:37:23,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:37:54] 2025-10-12 09:37:23,580 | INFO     | did not find any defunct processes belonging to 24629
[2025-10-12 05:37:54] 2025-10-12 09:37:23,584 | INFO     | did not find any defunct processes belonging to 24629
[2025-10-12 05:37:54] 2025-10-12 09:37:23,584 | INFO     | ready for new job
[2025-10-12 05:37:54] 2025-10-12 09:37:23,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:37:54] 2025-10-12 09:37:23,586 | INFO     | ***************************************
[2025-10-12 05:37:54] 2025-10-12 09:37:23,586 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 05:37:54] 2025-10-12 09:37:23,586 | INFO     | ***************************************
[2025-10-12 05:37:54] 2025-10-12 09:37:23,586 | INFO     | 
[2025-10-12 05:37:54] 2025-10-12 09:37:23,587 | INFO     | architecture information:
[2025-10-12 05:37:54] 2025-10-12 09:37:23,587 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:37:54] 2025-10-12 09:37:23,602 | INFO     | cat /etc/os-release:
[2025-10-12 05:37:54] NAME="CentOS Linux"
[2025-10-12 05:37:54] VERSION="7 (Core)"
[2025-10-12 05:37:54] ID="centos"
[2025-10-12 05:37:54] ID_LIKE="rhel fedora"
[2025-10-12 05:37:54] VERSION_ID="7"
[2025-10-12 05:37:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:37:54] ANSI_COLOR="0;31"
[2025-10-12 05:37:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:37:54] HOME_URL="https://www.centos.org/"
[2025-10-12 05:37:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:37:54] 
[2025-10-12 05:37:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:37:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:37:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:37:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:37:54] 
[2025-10-12 05:37:54] 2025-10-12 09:37:23,602 | INFO     | ***************************************
[2025-10-12 05:37:54] 2025-10-12 09:37:24,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 05:37:54] 2025-10-12 09:37:24,121 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-10-12 05:37:54] 2025-10-12 09:37:24,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:37:54] 2025-10-12 09:37:24,122 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:37:54] 2025-10-12 09:37:24,122 | INFO     | update_server=False
[2025-10-12 05:37:54] 2025-10-12 09:37:24,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:37:54] 2025-10-12 09:37:24,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:37:54] 2025-10-12 09:37:24,123 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:37:54] 2025-10-12 09:37:24,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:37:54] 2025-10-12 09:37:24,185 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:37:54] 2025-10-12 09:37:24,185 | INFO     | aborting loop
[2025-10-12 05:37:54] 2025-10-12 09:37:24,846 | INFO     | all data control threads have been joined
[2025-10-12 05:37:54] 2025-10-12 09:37:25,128 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:25,128 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:25,145 | INFO     | all payload control threads have been joined
[2025-10-12 05:37:54] 2025-10-12 09:37:25,191 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:25,233 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:25,375 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:25,515 | INFO     | all job control threads have been joined
[2025-10-12 05:37:54] 2025-10-12 09:37:25,851 | INFO     | [data] control thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,051 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,054 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,085 | INFO     | [job] validate thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,129 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,150 | INFO     | [payload] control thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,278 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,518 | INFO     | [job] control thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:26,519 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:28,129 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:30,043 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:37:54] 2025-10-12 09:37:34,899 | INFO     | job.realtimelogging is not enabled
[2025-10-12 05:37:54] 2025-10-12 09:37:35,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:37:54] 2025-10-12 09:37:36,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170254251840)>', '<ExcThread(monitor, started 140169076274944)>']
[2025-10-12 05:37:54] 2025-10-12 09:37:41,839 | INFO     | all workflow threads have been joined
[2025-10-12 05:37:54] 2025-10-12 09:37:41,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:37:54] 2025-10-12 09:37:41,839 | INFO     | traces error code: 0
[2025-10-12 05:37:54] 2025-10-12 09:37:41,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:37:54] 2025-10-12 09:37:54,634 | INFO     | PID=17574 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 05:37:54] 2025-10-12 09:37:54,634 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:37:54] 2025-10-12 09:37:54,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:37:54] 2025-10-12 09:37:54,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:37:54] 2025-10-12 09:37:54,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:37:54] 2025-10-12 09:37:54,635 | INFO     | [monitor] control thread has ended
[2025-10-12 05:37:54] 2025-10-12 09:37:54,725 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:37:54] 2025-10-12 09:37:54,730 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:37:54] 2025-10-12 09:37:54,733 [wrapper] pilotpid: 17574
[2025-10-12 05:37:54] 2025-10-12 09:37:54,737 [wrapper] Pilot exit status: 0
[2025-10-12 05:37:54] 2025-10-12 09:37:54,754 [wrapper] pandaids: 6839318327
[2025-10-12 05:37:54] 2025-10-12 09:37:54,795 [wrapper] cleanup supervisor_pilot 11084 17575
[2025-10-12 05:37:54] 2025-10-12 09:37:54,800 [wrapper] Test setup, not cleaning
[2025-10-12 05:37:54] 2025-10-12 09:37:54,804 [wrapper] apfmon messages muted
[2025-10-12 05:37:54] 2025-10-12 09:37:54,808 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:37:54] 2025-10-12 09:37:54,811 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:37:54]  *** Error codes and diagnostics ***
[2025-10-12 05:37:54]     "exeErrorCode": 0,
[2025-10-12 05:37:54]     "exeErrorDiag": "",
[2025-10-12 05:37:54]     "pilotErrorCode": 0,
[2025-10-12 05:37:54]     "pilotErrorDiag": "",
[2025-10-12 05:37:54]  *** Listing of results directory ***
[2025-10-12 05:37:54] total 409200
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 22:56 pilot3.tar.gz
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 23:00 queuedata.json
[2025-10-12 05:37:54] -rwx------ 1 boincer umatlas     36292 Oct 11 23:00 runpilot2-wrapper.sh
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas       100 Oct 12 04:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:37:54] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 04:25 run_atlas
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas       105 Oct 12 04:25 job.xml
[2025-10-12 05:37:54] -rw-r--r-- 2 boincer umatlas 220236804 Oct 12 04:25 EVNT.46676267._003200.pool.root.1
[2025-10-12 05:37:54] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:25 start_atlas.sh
[2025-10-12 05:37:54] drwxrwx--x 2 boincer umatlas      4096 Oct 12 04:25 shared
[2025-10-12 05:37:54] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 04:25 input.tar.gz
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas         0 Oct 12 04:25 boinc_lockfile
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas      2551 Oct 12 04:25 pandaJob.out
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas    975520 Oct 12 04:25 agis_schedconf.cvmfs.json
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas   1560580 Oct 12 04:25 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:37:54] drwx------ 5 boincer umatlas      4096 Oct 12 04:25 pilot3
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 05:29 init_data.xml
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas 192853383 Oct 12 05:36 HITS.46676269._069748.pool.root.1
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas       530 Oct 12 05:36 boinc_task_state.xml
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas      1050 Oct 12 05:37 memory_monitor_summary.json
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas    385812 Oct 12 05:37 log.46676269._069748.job.log.tgz.1
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas        95 Oct 12 05:37 pilot_heartbeat.json
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 05:37 boinc_mmap_file
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas      7854 Oct 12 05:37 heartbeat.json
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas        27 Oct 12 05:37 wrapper_checkpoint.txt
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas       745 Oct 12 05:37 pilotlog.txt
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas    628059 Oct 12 05:37 log.46676269._069748.job.log.1
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas       357 Oct 12 05:37 output.list
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas       620 Oct 12 05:37 runtime_log
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas   1034240 Oct 12 05:37 result.tar.gz
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 05:37 runtime_log.err
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas       659 Oct 12 05:37 dxwLDmGV1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm73SMDmDnU4xm.diag
[2025-10-12 05:37:54] -rw-r--r-- 1 boincer umatlas     21825 Oct 12 05:37 stderr.txt
[2025-10-12 05:37:54] HITS file was successfully produced:
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas 192853383 Oct 12 05:36 shared/HITS.pool.root.1
[2025-10-12 05:37:54]  *** Contents of shared directory: ***
[2025-10-12 05:37:54] total 405004
[2025-10-12 05:37:54] -rw-r--r-- 2 boincer umatlas 220236804 Oct 12 04:25 ATLAS.root_0
[2025-10-12 05:37:54] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:25 start_atlas.sh
[2025-10-12 05:37:54] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 04:25 input.tar.gz
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas 192853383 Oct 12 05:36 HITS.pool.root.1
[2025-10-12 05:37:54] -rw------- 1 boincer umatlas   1034240 Oct 12 05:37 result.tar.gz
05:37:56 (13659): run_atlas exited; CPU time 45557.624094
05:37:56 (13659): called boinc_finish(0)

</stderr_txt>
]]>

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