Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:34:52 (5382): wrapper (7.7.26015): starting
04:34:52 (5382): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 04:34:52] Arguments: --nthreads 8
[2025-10-12 04:34:52] Threads: 8
[2025-10-12 04:34:52] Checking for CVMFS
[2025-10-12 04:34:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:34:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:34:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:34:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:34:53] 2.11.2.0 6956 52623 130052 151613 2 188 10222466 18432000 1833 130560 0 47517190 99.973 2377020 39946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 04:34:53] CVMFS is ok
[2025-10-12 04:34:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:34:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:34:53] Further information can be found at the LHC@home message board.
[2025-10-12 04:34:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:34:53] Checking for apptainer binary...
[2025-10-12 04:34:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:34:53] Running /usr/bin/apptainer --version
[2025-10-12 04:34:53] apptainer version 1.3.2-1.el7
[2025-10-12 04:34:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:34:53] c-206-16.aglt2.org
[2025-10-12 04:34:53] apptainer works
[2025-10-12 04:34:53] Set ATHENA_PROC_NUMBER=8
[2025-10-12 04:34:53] Set ATHENA_CORE_NUMBER=8
[2025-10-12 04:34:54] Starting ATLAS job with PandaID=6839318498
[2025-10-12 04:34:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:32:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:32:27] 2025-10-12 11:31:48,339 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:32:27] 2025-10-12 11:31:48,340 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:32:27] 2025-10-12 11:31:48,342 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:32:27] 2025-10-12 11:31:48,342 | INFO     | sum of square deviations: 1633472487.5
[2025-10-12 07:32:27] 2025-10-12 11:31:48,343 | INFO     | sum of deviations: 3223950314.5
[2025-10-12 07:32:27] 2025-10-12 11:31:48,343 | INFO     | mean x: 1760263405.5
[2025-10-12 07:32:27] 2025-10-12 11:31:48,344 | INFO     | mean y: 2464644.2586206896
[2025-10-12 07:32:27] 2025-10-12 11:31:48,344 | INFO     | -- intersect: -3471730240.0703177
[2025-10-12 07:32:27] 2025-10-12 11:31:48,344 | INFO     | intersect: -3471730240.0703177
[2025-10-12 07:32:27] 2025-10-12 11:31:48,344 | INFO     | chi2: 2.3351403747200314
[2025-10-12 07:32:27] 2025-10-12 11:31:48,344 | INFO     | sum of square deviations: 1496660620.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,345 | INFO     | sum of deviations: 14885145092.000006
[2025-10-12 07:32:27] 2025-10-12 11:31:48,345 | INFO     | mean x: 1760263253.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,345 | INFO     | mean y: 2477336.5147928996
[2025-10-12 07:32:27] 2025-10-12 11:31:48,345 | INFO     | -- intersect: -17504346569.242085
[2025-10-12 07:32:27] 2025-10-12 11:31:48,346 | INFO     | intersect: -17504346569.242085
[2025-10-12 07:32:27] 2025-10-12 11:31:48,346 | INFO     | chi2: 1.5133358778795793
[2025-10-12 07:32:27] 2025-10-12 11:31:48,346 | INFO     | current chi2=1.5133358778795793 (change=35.192937681058304 %)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,346 | INFO     | sum of square deviations: 1367709365.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,347 | INFO     | sum of deviations: 14554005860.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,347 | INFO     | mean x: 1760263100.5
[2025-10-12 07:32:27] 2025-10-12 11:31:48,348 | INFO     | mean y: 2476944.987804878
[2025-10-12 07:32:27] 2025-10-12 11:31:48,348 | INFO     | -- intersect: -18728753633.241634
[2025-10-12 07:32:27] 2025-10-12 11:31:48,348 | INFO     | intersect: -18728753633.241634
[2025-10-12 07:32:27] 2025-10-12 11:31:48,348 | INFO     | chi2: 1.5147400543296865
[2025-10-12 07:32:27] 2025-10-12 11:31:48,349 | INFO     | current chi2=1.5147400543296865 (change=-0.09278683408171252 %)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,349 | INFO     | right removable region: 163
[2025-10-12 07:32:27] 2025-10-12 11:31:48,349 | INFO     | sum of square deviations: 1496660620.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,351 | INFO     | sum of deviations: -23835492580.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,351 | INFO     | mean x: 1760263558.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,351 | INFO     | mean y: 2494449.2899408285
[2025-10-12 07:32:27] 2025-10-12 11:31:48,351 | INFO     | -- intersect: 28036070274.6186
[2025-10-12 07:32:27] 2025-10-12 11:31:48,351 | INFO     | intersect: 28036070274.6186
[2025-10-12 07:32:27] 2025-10-12 11:31:48,352 | INFO     | chi2: 0.8957267341750934
[2025-10-12 07:32:27] 2025-10-12 11:31:48,352 | INFO     | current chi2=0.8957267341750934 (change=61.64141805468609 %)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,352 | INFO     | sum of square deviations: 1367709365.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,354 | INFO     | sum of deviations: -24271832930.5
[2025-10-12 07:32:27] 2025-10-12 11:31:48,354 | INFO     | mean x: 1760263710.5
[2025-10-12 07:32:27] 2025-10-12 11:31:48,354 | INFO     | mean y: 2494918.0914634145
[2025-10-12 07:32:27] 2025-10-12 11:31:48,354 | INFO     | -- intersect: 31240730019.94589
[2025-10-12 07:32:27] 2025-10-12 11:31:48,354 | INFO     | intersect: 31240730019.94589
[2025-10-12 07:32:27] 2025-10-12 11:31:48,355 | INFO     | chi2: 0.8815512333705915
[2025-10-12 07:32:27] 2025-10-12 11:31:48,355 | INFO     | current chi2=0.8815512333705915 (change=1.5825698021123193 %)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,355 | INFO     | left removable region: 20
[2025-10-12 07:32:27] 2025-10-12 11:31:48,356 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,357 | INFO     | sum of deviations: -8592175130.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,357 | INFO     | mean x: 1760263680.0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,357 | INFO     | mean y: 2505050.769230769
[2025-10-12 07:32:27] 2025-10-12 11:31:48,357 | INFO     | -- intersect: 16683254174.787489
[2025-10-12 07:32:27] 2025-10-12 11:31:48,357 | INFO     | intersect: 16683254174.787489
[2025-10-12 07:32:27] 2025-10-12 11:31:48,358 | INFO     | chi2: 0.029040518607585147
[2025-10-12 07:32:27] 2025-10-12 11:31:48,358 | INFO     | -- intersect: 16683254174.787489
[2025-10-12 07:32:27] 2025-10-12 11:31:48,358 | INFO     | current memory leak: -9.48 B/s (using 143 data points, chi2=0.03)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,359 | INFO     | could have reported an average CPU frequency of 2534 MHz (9 samples)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,359 | INFO     | ..............................
[2025-10-12 07:32:27] 2025-10-12 11:31:48,359 | INFO     | . Timing measurements:
[2025-10-12 07:32:27] 2025-10-12 11:31:48,359 | INFO     | . get job = 0 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | . initial setup = 2 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | . payload setup = 4 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | . stage-in = 0 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | . payload execution = 10573 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | . stage-out = 0 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | . log creation = 0 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,360 | INFO     | ..............................
[2025-10-12 07:32:27] 2025-10-12 11:31:48,436 | INFO     | 
[2025-10-12 07:32:27] 2025-10-12 11:31:48,436 | INFO     | job summary report
[2025-10-12 07:32:27] 2025-10-12 11:31:48,436 | INFO     | --------------------------------------------------
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | PanDA job id: 6839318498
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | task id: 46676269
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | errors: (none)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | pilot state: finished 
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | transexitcode: 0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | exeerrorcode: 0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | exeerrordiag: 
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | exitcode: 0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | exitmsg: OK
[2025-10-12 07:32:27] 2025-10-12 11:31:48,437 | INFO     | cpuconsumptiontime: 80295 s
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | nevents: 400
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | neventsw: 0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | pid: 16728
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | pgrp: 16728
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | corecount: 8
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | event service: False
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 10582: 2387003, 10585: 2387003, 10589: 2387389}
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | --------------------------------------------------
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | 
[2025-10-12 07:32:27] 2025-10-12 11:31:48,438 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 07:32:27] 2025-10-12 11:31:48,452 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,452 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,452 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,452 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,452 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,453 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | job 6839318498 has completed (purged errors)
[2025-10-12 07:32:27] 2025-10-12 11:31:48,454 | INFO     | overall cleanup function is called
[2025-10-12 07:32:27] 2025-10-12 11:31:49,461 | INFO     | --- collectZombieJob: --- 10, [16728]
[2025-10-12 07:32:27] 2025-10-12 11:31:49,462 | INFO     | zombie collector waiting for pid 16728
[2025-10-12 07:32:27] 2025-10-12 11:31:49,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:32:27] 2025-10-12 11:31:49,462 | INFO     | collected zombie processes
[2025-10-12 07:32:27] 2025-10-12 11:31:49,462 | INFO     | will attempt to kill all subprocesses of pid=16728
[2025-10-12 07:32:27] 2025-10-12 11:31:49,568 | INFO     | process IDs to be killed: [16728] (in reverse order)
[2025-10-12 07:32:27] 2025-10-12 11:31:49,604 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:32:27] 2025-10-12 11:31:49,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:32:27] 2025-10-12 11:31:49,607 | INFO     | did not find any defunct processes belonging to 16728
[2025-10-12 07:32:27] 2025-10-12 11:31:49,609 | INFO     | did not find any defunct processes belonging to 16728
[2025-10-12 07:32:27] 2025-10-12 11:31:49,609 | INFO     | ready for new job
[2025-10-12 07:32:27] 2025-10-12 11:31:49,610 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:32:27] 2025-10-12 11:31:49,611 | INFO     | ***************************************
[2025-10-12 07:32:27] 2025-10-12 11:31:49,611 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:32:27] 2025-10-12 11:31:49,611 | INFO     | ***************************************
[2025-10-12 07:32:27] 2025-10-12 11:31:49,611 | INFO     | 
[2025-10-12 07:32:27] 2025-10-12 11:31:49,612 | INFO     | architecture information:
[2025-10-12 07:32:27] 2025-10-12 11:31:49,612 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:32:27] 2025-10-12 11:31:49,623 | INFO     | cat /etc/os-release:
[2025-10-12 07:32:27] NAME="CentOS Linux"
[2025-10-12 07:32:27] VERSION="7 (Core)"
[2025-10-12 07:32:27] ID="centos"
[2025-10-12 07:32:27] ID_LIKE="rhel fedora"
[2025-10-12 07:32:27] VERSION_ID="7"
[2025-10-12 07:32:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:32:27] ANSI_COLOR="0;31"
[2025-10-12 07:32:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:32:27] HOME_URL="https://www.centos.org/"
[2025-10-12 07:32:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:32:27] 
[2025-10-12 07:32:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:32:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:32:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:32:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:32:27] 
[2025-10-12 07:32:27] 2025-10-12 11:31:49,623 | INFO     | ***************************************
[2025-10-12 07:32:27] 2025-10-12 11:31:50,126 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 07:32:27] 2025-10-12 11:31:50,138 | INFO     | sufficient remaining disk space (28338814976 B)
[2025-10-12 07:32:27] 2025-10-12 11:31:50,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:32:27] 2025-10-12 11:31:50,138 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:32:27] 2025-10-12 11:31:50,139 | INFO     | update_server=False
[2025-10-12 07:32:27] 2025-10-12 11:31:50,139 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:32:27] 2025-10-12 11:31:50,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:32:27] 2025-10-12 11:31:50,242 | INFO     | all payload control threads have been joined
[2025-10-12 07:32:27] 2025-10-12 11:31:50,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:32:27] 2025-10-12 11:31:50,396 | INFO     | all data control threads have been joined
[2025-10-12 07:32:27] 2025-10-12 11:31:50,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:32:27] 2025-10-12 11:31:50,874 | INFO     | aborting loop
[2025-10-12 07:32:27] 2025-10-12 11:31:51,142 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,145 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,248 | INFO     | [payload] control thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:32:27] 2025-10-12 11:31:51,401 | INFO     | [data] control thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,426 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,524 | INFO     | all job control threads have been joined
[2025-10-12 07:32:27] 2025-10-12 11:31:51,534 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,818 | INFO     | [job] validate thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,875 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:51,885 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:52,110 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:52,270 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:52,306 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:52,526 | INFO     | [job] control thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:52,558 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:31:55,285 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:32:00,261 | INFO     | job.realtimelogging is not enabled
[2025-10-12 07:32:27] 2025-10-12 11:32:01,272 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:32:27] 2025-10-12 11:32:20,275 | INFO     | PID=9837 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 07:32:27] 2025-10-12 11:32:20,275 | INFO     | .. there are 3 such processes running
[2025-10-12 07:32:27] 2025-10-12 11:32:20,276 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:32:27] 2025-10-12 11:32:20,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:32:27] 2025-10-12 11:32:20,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:32:27] 2025-10-12 11:32:21,594 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:32:27] 2025-10-12 11:32:21,768 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718640023360)>', '<ExcThread(monitor, started 140718211323648)>']
[2025-10-12 07:32:27] 2025-10-12 11:32:22,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:32:27] 2025-10-12 11:32:22,285 | INFO     | [monitor] control thread has ended
[2025-10-12 07:32:27] 2025-10-12 11:32:26,793 | INFO     | all workflow threads have been joined
[2025-10-12 07:32:27] 2025-10-12 11:32:26,793 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:32:27] 2025-10-12 11:32:26,793 | INFO     | traces error code: 0
[2025-10-12 07:32:27] 2025-10-12 11:32:26,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:32:27] 2025-10-12 11:32:26,871 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:32:27] 2025-10-12 11:32:26,872 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:32:27] 2025-10-12 11:32:26,874 [wrapper] pilotpid: 9837
[2025-10-12 07:32:27] 2025-10-12 11:32:26,876 [wrapper] Pilot exit status: 0
[2025-10-12 07:32:27] 2025-10-12 11:32:26,883 [wrapper] pandaids: 6839318498
[2025-10-12 07:32:27] 2025-10-12 11:32:26,909 [wrapper] cleanup supervisor_pilot 13067 9838
[2025-10-12 07:32:27] 2025-10-12 11:32:26,912 [wrapper] Test setup, not cleaning
[2025-10-12 07:32:27] 2025-10-12 11:32:26,914 [wrapper] apfmon messages muted
[2025-10-12 07:32:27] 2025-10-12 11:32:26,917 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:32:27] 2025-10-12 11:32:26,919 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:32:27]  *** Error codes and diagnostics ***
[2025-10-12 07:32:27]     "exeErrorCode": 0,
[2025-10-12 07:32:27]     "exeErrorDiag": "",
[2025-10-12 07:32:27]     "pilotErrorCode": 0,
[2025-10-12 07:32:27]     "pilotErrorDiag": "",
[2025-10-12 07:32:27]  *** Listing of results directory ***
[2025-10-12 07:32:27] total 408944
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 22:56 pilot3.tar.gz
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 23:03 queuedata.json
[2025-10-12 07:32:27] -rwx------ 1 boincer umatlas     36292 Oct 11 23:04 runpilot2-wrapper.sh
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas       100 Oct 12 04:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:32:27] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 04:34 run_atlas
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas       105 Oct 12 04:34 job.xml
[2025-10-12 07:32:27] -rw-r--r-- 2 boincer umatlas 221379740 Oct 12 04:34 EVNT.46676267._003209.pool.root.1
[2025-10-12 07:32:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:34 start_atlas.sh
[2025-10-12 07:32:27] drwxrwx--x 2 boincer umatlas      4096 Oct 12 04:34 shared
[2025-10-12 07:32:27] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 04:34 input.tar.gz
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas         0 Oct 12 04:34 boinc_lockfile
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 04:34 pandaJob.out
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas    975520 Oct 12 04:35 agis_schedconf.cvmfs.json
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas   1560580 Oct 12 04:35 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:32:27] drwx------ 5 boincer umatlas      4096 Oct 12 04:35 pilot3
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas      5950 Oct 12 07:28 init_data.xml
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas 189679768 Oct 12 07:31 HITS.46676269._069919.pool.root.1
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas       530 Oct 12 07:31 boinc_task_state.xml
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas      1054 Oct 12 07:31 memory_monitor_summary.json
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas    412272 Oct 12 07:31 log.46676269._069919.job.log.tgz.1
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas      7861 Oct 12 07:31 heartbeat.json
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas        95 Oct 12 07:32 pilot_heartbeat.json
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 07:32 boinc_mmap_file
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas        28 Oct 12 07:32 wrapper_checkpoint.txt
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas      4892 Oct 12 07:32 pilotlog.txt
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas   1485733 Oct 12 07:32 log.46676269._069919.job.log.1
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas       357 Oct 12 07:32 output.list
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas       620 Oct 12 07:32 runtime_log
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas   1914880 Oct 12 07:32 result.tar.gz
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 07:32 runtime_log.err
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas       660 Oct 12 07:32 poNODmDZ1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnRiNDm1ihLQm.diag
[2025-10-12 07:32:27] -rw-r--r-- 1 boincer umatlas     20843 Oct 12 07:32 stderr.txt
[2025-10-12 07:32:27] HITS file was successfully produced:
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas 189679768 Oct 12 07:31 shared/HITS.pool.root.1
[2025-10-12 07:32:27]  *** Contents of shared directory: ***
[2025-10-12 07:32:27] total 403884
[2025-10-12 07:32:27] -rw-r--r-- 2 boincer umatlas 221379740 Oct 12 04:34 ATLAS.root_0
[2025-10-12 07:32:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:34 start_atlas.sh
[2025-10-12 07:32:27] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 04:34 input.tar.gz
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas 189679768 Oct 12 07:31 HITS.pool.root.1
[2025-10-12 07:32:27] -rw------- 1 boincer umatlas   1914880 Oct 12 07:32 result.tar.gz
07:32:28 (5382): run_atlas exited; CPU time 80414.319596
07:32:28 (5382): called boinc_finish(0)

</stderr_txt>
]]>

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