Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:46:12 (1022443): wrapper (7.7.26015): starting
18:46:12 (1022443): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 18:46:12] Arguments: --nthreads 3
[2025-10-12 18:46:12] Threads: 3
[2025-10-12 18:46:12] Checking for CVMFS
[2025-10-12 18:46:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:46:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:46:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:46:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:46:13] 2.9.2.0 3005 3315 82592 151627 0 56 29419555 36864000 0 130560 0 2690898 99.991 121622 991 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 18:46:13] CVMFS is ok
[2025-10-12 18:46:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:46:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:46:13] Further information can be found at the LHC@home message board.
[2025-10-12 18:46:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:46:13] Checking for apptainer binary...
[2025-10-12 18:46:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:46:13] Running /usr/bin/apptainer --version
[2025-10-12 18:46:13] apptainer version 1.4.1-1.1
[2025-10-12 18:46:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:46:13] thA335b
[2025-10-12 18:46:13] apptainer works
[2025-10-12 18:46:13] Set ATHENA_PROC_NUMBER=3
[2025-10-12 18:46:13] Set ATHENA_CORE_NUMBER=3
[2025-10-12 18:46:13] Starting ATLAS job with PandaID=6839318533
[2025-10-12 18:46:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:04:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:04:29] 2025-10-12 18:03:52,362 | INFO     | number of running child processes to parent process 1032587: 1
[2025-10-12 20:04:29] 2025-10-12 18:03:52,362 | INFO     | maximum number of monitored processes: 6
[2025-10-12 20:04:29] 2025-10-12 18:03:52,362 | INFO     | aborting job monitoring since job object (job id=6839318533) has expired
[2025-10-12 20:04:29] 2025-10-12 18:03:53,335 | INFO     | --- collectZombieJob: --- 10, [1032587]
[2025-10-12 20:04:29] 2025-10-12 18:03:53,336 | INFO     | zombie collector waiting for pid 1032587
[2025-10-12 20:04:29] 2025-10-12 18:03:53,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:04:29] 2025-10-12 18:03:53,336 | INFO     | collected zombie processes
[2025-10-12 20:04:29] 2025-10-12 18:03:53,336 | INFO     | will attempt to kill all subprocesses of pid=1032587
[2025-10-12 20:04:29] 2025-10-12 18:03:53,377 | INFO     | process IDs to be killed: [1032587] (in reverse order)
[2025-10-12 20:04:29] 2025-10-12 18:03:53,401 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:04:29] 2025-10-12 18:03:53,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:04:29] 2025-10-12 18:03:53,402 | INFO     | did not find any defunct processes belonging to 1032587
[2025-10-12 20:04:29] 2025-10-12 18:03:53,403 | INFO     | did not find any defunct processes belonging to 1032587
[2025-10-12 20:04:29] 2025-10-12 18:03:53,404 | INFO     | ready for new job
[2025-10-12 20:04:29] 2025-10-12 18:03:53,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:04:29] 2025-10-12 18:03:53,404 | INFO     | ***************************************
[2025-10-12 20:04:29] 2025-10-12 18:03:53,404 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:04:29] 2025-10-12 18:03:53,404 | INFO     | ***************************************
[2025-10-12 20:04:29] 2025-10-12 18:03:53,404 | INFO     | 
[2025-10-12 20:04:29] 2025-10-12 18:03:53,405 | INFO     | architecture information:
[2025-10-12 20:04:29] 2025-10-12 18:03:53,405 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:04:29] 2025-10-12 18:03:53,413 | INFO     | cat /etc/os-release:
[2025-10-12 20:04:29] NAME="CentOS Linux"
[2025-10-12 20:04:29] VERSION="7 (Core)"
[2025-10-12 20:04:29] ID="centos"
[2025-10-12 20:04:29] ID_LIKE="rhel fedora"
[2025-10-12 20:04:29] VERSION_ID="7"
[2025-10-12 20:04:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:04:29] ANSI_COLOR="0;31"
[2025-10-12 20:04:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:04:29] HOME_URL="https://www.centos.org/"
[2025-10-12 20:04:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:04:29] 
[2025-10-12 20:04:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:04:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:04:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:04:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:04:29] 
[2025-10-12 20:04:29] 2025-10-12 18:03:53,413 | INFO     | ***************************************
[2025-10-12 20:04:29] 2025-10-12 18:03:53,917 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:04:29] 2025-10-12 18:03:53,929 | INFO     | sufficient remaining disk space (375483531264 B)
[2025-10-12 20:04:29] 2025-10-12 18:03:53,929 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | INFO     | update_server=False
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:04:29] 2025-10-12 18:03:53,930 | INFO     | aborting loop
[2025-10-12 20:04:29] 2025-10-12 18:03:54,179 | INFO     | all job control threads have been joined
[2025-10-12 20:04:29] 2025-10-12 18:03:54,207 | INFO     | all data control threads have been joined
[2025-10-12 20:04:29] 2025-10-12 18:03:54,931 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:54,935 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:54,936 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:54,973 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:55,155 | INFO     | all payload control threads have been joined
[2025-10-12 20:04:29] 2025-10-12 18:03:55,184 | INFO     | [job] control thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:55,213 | INFO     | [data] control thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:55,394 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:55,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:55,711 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:55,936 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:56,161 | INFO     | [payload] control thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:56,171 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:56,322 | INFO     | [job] validate thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:56,359 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:56,367 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:03:57,937 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:04:29] 2025-10-12 18:04:24,141 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:04:29] 2025-10-12 18:04:24,335 | INFO     | PID=1026161 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:04:29] 2025-10-12 18:04:24,335 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:04:29] 2025-10-12 18:04:24,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:04:29] 2025-10-12 18:04:24,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:04:29] 2025-10-12 18:04:24,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967556544320)>', '<ExcThread(monitor, started 139966927591168)>']
[2025-10-12 20:04:29] 2025-10-12 18:04:25,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:04:29] 2025-10-12 18:04:25,340 | INFO     | [monitor] control thread has ended
[2025-10-12 20:04:29] 2025-10-12 18:04:29,829 | INFO     | all workflow threads have been joined
[2025-10-12 20:04:29] 2025-10-12 18:04:29,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:04:29] 2025-10-12 18:04:29,830 | INFO     | traces error code: 0
[2025-10-12 20:04:29] 2025-10-12 18:04:29,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:04:29] 2025-10-12 18:04:29,880 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:04:29] 2025-10-12 18:04:29,882 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:04:29] 2025-10-12 18:04:29,885 [wrapper] pilotpid: 1026161
[2025-10-12 20:04:29] 2025-10-12 18:04:29,887 [wrapper] Pilot exit status: 0
[2025-10-12 20:04:29] 2025-10-12 18:04:29,894 [wrapper] pandaids: 6839318533
[2025-10-12 20:04:29] 2025-10-12 18:04:29,910 [wrapper] cleanup supervisor_pilot 1044432 1026162
[2025-10-12 20:04:29] 2025-10-12 18:04:29,912 [wrapper] Test setup, not cleaning
[2025-10-12 20:04:29] 2025-10-12 18:04:29,914 [wrapper] apfmon messages muted
[2025-10-12 20:04:29] 2025-10-12 18:04:29,916 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:04:29] 2025-10-12 18:04:29,919 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:04:29]  *** Error codes and diagnostics ***
[2025-10-12 20:04:29]     "exeErrorCode": 0,
[2025-10-12 20:04:29]     "exeErrorDiag": "",
[2025-10-12 20:04:29]     "pilotErrorCode": 0,
[2025-10-12 20:04:29]     "pilotErrorDiag": "",
[2025-10-12 20:04:29]  *** Listing of results directory ***
[2025-10-12 20:04:29] total 405340
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:03 queuedata.json
[2025-10-12 20:04:29] -rwx------ 1 boinc boinc     36292 Oct 12 05:05 runpilot2-wrapper.sh
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:04:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:46 run_atlas
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:46 job.xml
[2025-10-12 20:04:29] -rw-r--r-- 2 boinc boinc 218670916 Oct 12 18:46 EVNT.46676267._003210.pool.root.1
[2025-10-12 20:04:29] -rw-r--r-- 2 boinc boinc    569681 Oct 12 18:46 input.tar.gz
[2025-10-12 20:04:29] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:46 start_atlas.sh
[2025-10-12 20:04:29] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:46 shared
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:46 boinc_setup_complete
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc      6445 Oct 12 18:46 init_data.xml
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:46 boinc_lockfile
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc      2550 Oct 12 18:46 pandaJob.out
[2025-10-12 20:04:29] -rw------- 1 boinc boinc    975528 Oct 12 18:46 agis_schedconf.cvmfs.json
[2025-10-12 20:04:29] -rw------- 1 boinc boinc   1560580 Oct 12 18:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:04:29] drwx------ 5 boinc boinc      4096 Oct 12 18:46 pilot3
[2025-10-12 20:04:29] -rw------- 1 boinc boinc 190602597 Oct 12 20:03 HITS.46676269._069954.pool.root.1
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:03 boinc_task_state.xml
[2025-10-12 20:04:29] -rw------- 1 boinc boinc        95 Oct 12 20:03 pilot_heartbeat.json
[2025-10-12 20:04:29] -rw------- 1 boinc boinc      1017 Oct 12 20:03 memory_monitor_summary.json
[2025-10-12 20:04:29] -rw------- 1 boinc boinc    261099 Oct 12 20:03 log.46676269._069954.job.log.tgz.1
[2025-10-12 20:04:29] -rw------- 1 boinc boinc      7754 Oct 12 20:03 heartbeat.json
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:04 boinc_mmap_file
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:04 wrapper_checkpoint.txt
[2025-10-12 20:04:29] -rw------- 1 boinc boinc      4752 Oct 12 20:04 pilotlog.txt
[2025-10-12 20:04:29] -rw------- 1 boinc boinc    688011 Oct 12 20:04 log.46676269._069954.job.log.1
[2025-10-12 20:04:29] -rw------- 1 boinc boinc       357 Oct 12 20:04 output.list
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:04 runtime_log
[2025-10-12 20:04:29] -rw------- 1 boinc boinc    972800 Oct 12 20:04 result.tar.gz
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc      8782 Oct 12 20:04 runtime_log.err
[2025-10-12 20:04:29] -rw------- 1 boinc boinc       659 Oct 12 20:04 SKlLDmCa1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0RiNDmiS1jLm.diag
[2025-10-12 20:04:29] -rw-r--r-- 1 boinc boinc     10965 Oct 12 20:04 stderr.txt
[2025-10-12 20:04:29] HITS file was successfully produced:
[2025-10-12 20:04:29] -rw------- 1 boinc boinc 190602597 Oct 12 20:03 shared/HITS.pool.root.1
[2025-10-12 20:04:29]  *** Contents of shared directory: ***
[2025-10-12 20:04:29] total 401220
[2025-10-12 20:04:29] -rw-r--r-- 2 boinc boinc 218670916 Oct 12 18:46 ATLAS.root_0
[2025-10-12 20:04:29] -rw-r--r-- 2 boinc boinc    569681 Oct 12 18:46 input.tar.gz
[2025-10-12 20:04:29] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:46 start_atlas.sh
[2025-10-12 20:04:29] -rw------- 1 boinc boinc 190602597 Oct 12 20:03 HITS.pool.root.1
[2025-10-12 20:04:29] -rw------- 1 boinc boinc    972800 Oct 12 20:04 result.tar.gz
20:04:52 (1022443): run_atlas exited; CPU time 13315.723647
20:04:52 (1022443): called boinc_finish(0)

</stderr_txt>
]]>

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