Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
20:25:35 (3764822): wrapper (7.7.26015): starting
20:25:35 (3764822): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 20:25:35] Arguments: --nthreads 4
[2025-10-12 20:25:35] Threads: 4
[2025-10-12 20:25:35] Checking for CVMFS
[2025-10-12 20:25:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:25:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:25:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:25:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:25:36] 2.13.2.0 2183684 3407 58436 151631 3 79 2063877 4194304 198 130560 208 4229277 96.227 17084917 400 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 20:25:36] CVMFS is ok
[2025-10-12 20:25:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:25:36] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 20:25:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 20:25:36] Further information can be found at the LHC@home message board.
[2025-10-12 20:25:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:25:36] Checking for apptainer binary...
[2025-10-12 20:25:36] apptainer is not installed, using version from CVMFS
[2025-10-12 20:25:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:25:36] Ryze
[2025-10-12 20:25:36] apptainer works
[2025-10-12 20:25:36] Set ATHENA_PROC_NUMBER=4
[2025-10-12 20:25:36] Set ATHENA_CORE_NUMBER=4
[2025-10-12 20:25:36] Starting ATLAS job with PandaID=6839317665
[2025-10-12 20:25:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:45:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | -- intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | current memory leak: 1135.68 B/s (using 9 data points, chi2=31.56)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | could have reported an average CPU frequency of 3443 MHz (4 samples)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | ..............................
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . Timing measurements:
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . get job = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . initial setup = 1 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . payload setup = 3 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . stage-in = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . payload execution = 976 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . stage-out = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . log creation = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | ..............................
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/2/PanDA_Pilot-6839317665/pilotlog.txt
[2025-10-12 20:45:07] 2025-10-12 18:44:35,339 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 20:45:07] - Log from pilotlog.txt -
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | mean x: 1760294128.0
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | mean y: 285673.8888888889
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | -- intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | chi2: 31.559689167099663
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | -- intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | current memory leak: 1135.68 B/s (using 9 data points, chi2=31.56)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | could have reported an average CPU frequency of 3443 MHz (4 samples)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | ..............................
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . Timing measurements:
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . get job = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . initial setup = 1 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . payload setup = 3 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . stage-in = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . payload execution = 976 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . stage-out = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . log creation = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | ..............................
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/2/PanDA_Pilot-6839317665/pilotlog.txt
[2025-10-12 20:45:07] 2025-10-12 18:44:35,339 | WARNING  | 
[2025-10-12 20:45:07] [begin log extracts]
[2025-10-12 20:45:07] - Log from pilotlog.txt -
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | mean x: 1760294128.0
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | mean y: 285673.8888888889
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | -- intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | chi2: 31.559689167099663
[2025-10-12 20:45:07] 2025-10-12 18:44:35,328 | INFO     | -- intersect: -1999130645804.087
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | current memory leak: 1135.68 B/s (using 9 data points, chi2=31.56)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | could have reported an average CPU frequency of 3443 MHz (4 samples)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | ..............................
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . Timing measurements:
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . get job = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . initial setup = 1 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . payload setup = 3 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . stage-in = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . payload execution = 976 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . stage-out = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | . log creation = 0 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | ..............................
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 20:45:07] 2025-10-12 18:44:35,329 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/2/PanDA_Pilot-6839317665/pilotlog.txt
[2025-10-12 20:45:07] [end log extracts]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,339 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,339 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | 
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | job summary report
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | --------------------------------------------------
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | PanDA job id: 6839317665
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | task id: 46676269
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 20:42:28,370 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | pilot state: failed 
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | transexitcode: 65
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | exeerrorcode: 65
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Py:ComponentAccumulator   ERROR This ComponentAccumulator was never merge
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | exitcode: 65
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Py:ComponentAccumulator   ERROR This ComponentAccumulator was never merged!"
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | cpuconsumptiontime: 28 s
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | nevents: 0
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | neventsw: 0
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | pid: 3788338
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | pgrp: 3788338
[2025-10-12 20:45:07] 2025-10-12 18:44:35,669 | INFO     | corecount: 4
[2025-10-12 20:45:07] 2025-10-12 18:44:35,670 | INFO     | event service: False
[2025-10-12 20:45:07] 2025-10-12 18:44:35,670 | INFO     | sizes: {0: 2348864, 2: 2349126, 10: 2349154, 983: 2379743, 984: 2379743, 1103: 2379937}
[2025-10-12 20:45:07] 2025-10-12 18:44:35,670 | INFO     | --------------------------------------------------
[2025-10-12 20:45:07] 2025-10-12 18:44:35,670 | INFO     | 
[2025-10-12 20:45:07] 2025-10-12 18:44:35,670 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-12 20:45:07] 2025-10-12 18:44:35,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | job 6839317665 has completed (purged errors)
[2025-10-12 20:45:07] 2025-10-12 18:44:35,687 | INFO     | overall cleanup function is called
[2025-10-12 20:45:07] 2025-10-12 18:44:36,693 | INFO     | --- collectZombieJob: --- 10, [3788338]
[2025-10-12 20:45:07] 2025-10-12 18:44:36,693 | INFO     | zombie collector waiting for pid 3788338
[2025-10-12 20:45:07] 2025-10-12 18:44:36,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:45:07] 2025-10-12 18:44:36,693 | INFO     | collected zombie processes
[2025-10-12 20:45:07] 2025-10-12 18:44:36,693 | INFO     | will attempt to kill all subprocesses of pid=3788338
[2025-10-12 20:45:07] 2025-10-12 18:44:36,765 | INFO     | process IDs to be killed: [3788338] (in reverse order)
[2025-10-12 20:45:07] 2025-10-12 18:44:36,801 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:45:07] 2025-10-12 18:44:36,801 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:45:07] 2025-10-12 18:44:36,804 | INFO     | did not find any defunct processes belonging to 3788338
[2025-10-12 20:45:07] 2025-10-12 18:44:36,807 | INFO     | did not find any defunct processes belonging to 3788338
[2025-10-12 20:45:07] 2025-10-12 18:44:36,807 | INFO     | ready for new job
[2025-10-12 20:45:07] 2025-10-12 18:44:36,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:45:07] 2025-10-12 18:44:36,808 | INFO     | ***************************************
[2025-10-12 20:45:07] 2025-10-12 18:44:36,808 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:45:07] 2025-10-12 18:44:36,808 | INFO     | ***************************************
[2025-10-12 20:45:07] 2025-10-12 18:44:36,808 | INFO     | 
[2025-10-12 20:45:07] 2025-10-12 18:44:36,809 | INFO     | architecture information:
[2025-10-12 20:45:07] 2025-10-12 18:44:36,809 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:45:07] 2025-10-12 18:44:36,824 | INFO     | cat /etc/os-release:
[2025-10-12 20:45:07] NAME="CentOS Linux"
[2025-10-12 20:45:07] VERSION="7 (Core)"
[2025-10-12 20:45:07] ID="centos"
[2025-10-12 20:45:07] ID_LIKE="rhel fedora"
[2025-10-12 20:45:07] VERSION_ID="7"
[2025-10-12 20:45:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:45:07] ANSI_COLOR="0;31"
[2025-10-12 20:45:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:45:07] HOME_URL="https://www.centos.org/"
[2025-10-12 20:45:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:45:07] 
[2025-10-12 20:45:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:45:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:45:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:45:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:45:07] 
[2025-10-12 20:45:07] 2025-10-12 18:44:36,824 | INFO     | ***************************************
[2025-10-12 20:45:07] 2025-10-12 18:44:37,327 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-12 20:45:07] 2025-10-12 18:44:37,339 | INFO     | sufficient remaining disk space (3169708933120 B)
[2025-10-12 20:45:07] 2025-10-12 18:44:37,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:45:07] 2025-10-12 18:44:37,340 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:45:07] 2025-10-12 18:44:37,340 | INFO     | update_server=False
[2025-10-12 20:45:07] 2025-10-12 18:44:37,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:45:07] 2025-10-12 18:44:37,340 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:45:07] 2025-10-12 18:44:37,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:45:07] 2025-10-12 18:44:37,518 | INFO     | all job control threads have been joined
[2025-10-12 20:45:07] 2025-10-12 18:44:37,680 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 20:45:07] 2025-10-12 18:44:37,680 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 20:45:07] 2025-10-12 18:44:37,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:45:07] 2025-10-12 18:44:37,680 | INFO     | will abort loop
[2025-10-12 20:45:07] 2025-10-12 18:44:38,345 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:38,345 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:38,412 | INFO     | all data control threads have been joined
[2025-10-12 20:45:07] 2025-10-12 18:44:38,518 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:38,523 | INFO     | [job] control thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:38,678 | INFO     | all payload control threads have been joined
[2025-10-12 20:45:07] 2025-10-12 18:44:38,685 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:38,692 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:38,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,193 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,345 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,417 | INFO     | [data] control thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,543 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,566 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:45:07] 2025-10-12 18:44:39,683 | INFO     | [payload] control thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,697 | INFO     | [job] validate thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,701 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:39,705 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:44:43,572 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:45:07] 2025-10-12 18:45:00,272 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:45:07] 2025-10-12 18:45:01,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124758972299072)>', '<ExcThread(monitor, started 124758414825216)>']
[2025-10-12 20:45:07] 2025-10-12 18:45:06,256 | INFO     | all workflow threads have been joined
[2025-10-12 20:45:07] 2025-10-12 18:45:06,256 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:45:07] 2025-10-12 18:45:06,256 | INFO     | traces error code: 0
[2025-10-12 20:45:07] 2025-10-12 18:45:06,257 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | INFO     | PID=3781760 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | INFO     | .. there are 3 such processes running
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:45:07] 2025-10-12 18:45:07,257 | INFO     | [monitor] control thread has ended
[2025-10-12 20:45:07] 2025-10-12 18:45:07,339 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:45:07] 2025-10-12 18:45:07,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:45:07] 2025-10-12 18:45:07,343 [wrapper] pilotpid: 3781760
[2025-10-12 20:45:07] 2025-10-12 18:45:07,345 [wrapper] Pilot exit status: 0
[2025-10-12 20:45:07] 2025-10-12 18:45:07,352 [wrapper] pandaids: 6839317665
[2025-10-12 20:45:07] 2025-10-12 18:45:07,376 [wrapper] cleanup supervisor_pilot 3795488 3781761
[2025-10-12 20:45:07] 2025-10-12 18:45:07,379 [wrapper] Test setup, not cleaning
[2025-10-12 20:45:07] 2025-10-12 18:45:07,380 [wrapper] apfmon messages muted
[2025-10-12 20:45:07] 2025-10-12 18:45:07,383 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:45:07] 2025-10-12 18:45:07,385 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:45:07]  *** Error codes and diagnostics ***
[2025-10-12 20:45:07]     "exeErrorCode": 65,
[2025-10-12 20:45:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Py:ComponentAccumulator   ERROR This ComponentAccumulator was never merged!\"",
[2025-10-12 20:45:07]     "pilotErrorCode": 1305,
[2025-10-12 20:45:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Py:ComponentAccumulator   ERROR This ComponentAccumulator was never merged!\"",
[2025-10-12 20:45:07]  *** Listing of results directory ***
[2025-10-12 20:45:07] insgesamt 218872
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc    557409 Okt 12 04:56 pilot3.tar.gz
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc      5112 Okt 12 05:00 queuedata.json
[2025-10-12 20:45:07] -rwx------ 1 boinc boinc     36292 Okt 12 05:00 runpilot2-wrapper.sh
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc       100 Okt 12 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:45:07] -rwxr-xr-x 1 boinc boinc      7986 Okt 12 20:25 run_atlas
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc       105 Okt 12 20:25 job.xml
[2025-10-12 20:45:07] -rw-r--r-- 2 boinc boinc 219730211 Okt 12 20:25 EVNT.46676267._003197.pool.root.1
[2025-10-12 20:45:07] drwxrwx--x 2 boinc boinc      4096 Okt 12 20:25 shared
[2025-10-12 20:45:07] -rw-r--r-- 2 boinc boinc    569679 Okt 12 20:25 input.tar.gz
[2025-10-12 20:45:07] -rw-r--r-- 2 boinc boinc     15120 Okt 12 20:25 start_atlas.sh
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc         0 Okt 12 20:25 boinc_setup_complete
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc      8874 Okt 12 20:25 init_data.xml
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc         0 Okt 12 20:25 boinc_lockfile
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc      2550 Okt 12 20:25 pandaJob.out
[2025-10-12 20:45:07] -rw------- 1 boinc boinc    975528 Okt 12 20:25 agis_schedconf.cvmfs.json
[2025-10-12 20:45:07] -rw------- 1 boinc boinc   1560580 Okt 12 20:25 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:45:07] drwx------ 5 boinc boinc      4096 Okt 12 20:25 pilot3
[2025-10-12 20:45:07] -rw------- 1 boinc boinc      1026 Okt 12 20:42 memory_monitor_summary.json
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc       525 Okt 12 20:42 boinc_task_state.xml
[2025-10-12 20:45:07] -rw------- 1 boinc boinc     33871 Okt 12 20:42 log.46676269._069704.job.log.tgz.1
[2025-10-12 20:45:07] -rw------- 1 boinc boinc        95 Okt 12 20:44 pilot_heartbeat.json
[2025-10-12 20:45:07] -rw------- 1 boinc boinc      9877 Okt 12 20:44 heartbeat.json
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc        24 Okt 12 20:45 wrapper_checkpoint.txt
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc      8192 Okt 12 20:45 boinc_mmap_file
[2025-10-12 20:45:07] -rw------- 1 boinc boinc       822 Okt 12 20:45 pilotlog.txt
[2025-10-12 20:45:07] -rw------- 1 boinc boinc    206766 Okt 12 20:45 log.46676269._069704.job.log.1
[2025-10-12 20:45:07] -rw------- 1 boinc boinc       188 Okt 12 20:45 output.list
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc       620 Okt 12 20:45 runtime_log
[2025-10-12 20:45:07] -rw------- 1 boinc boinc    266240 Okt 12 20:45 result.tar.gz
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc      8579 Okt 12 20:45 runtime_log.err
[2025-10-12 20:45:07] -rw------- 1 boinc boinc       627 Okt 12 20:45 9JiLDmFV1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmW3SMDmg6U1dn.diag
[2025-10-12 20:45:07] -rw-r--r-- 1 boinc boinc     22012 Okt 12 20:45 stderr.txt
[2025-10-12 20:45:07] No HITS result produced
[2025-10-12 20:45:07]  *** Contents of shared directory: ***
[2025-10-12 20:45:07] insgesamt 215424
[2025-10-12 20:45:07] -rw-r--r-- 2 boinc boinc 219730211 Okt 12 20:25 ATLAS.root_0
[2025-10-12 20:45:07] -rw-r--r-- 2 boinc boinc    569679 Okt 12 20:25 input.tar.gz
[2025-10-12 20:45:07] -rw-r--r-- 2 boinc boinc     15120 Okt 12 20:25 start_atlas.sh
[2025-10-12 20:45:07] -rw------- 1 boinc boinc    266240 Okt 12 20:45 result.tar.gz
20:45:09 (3764822): run_atlas exited; CPU time 34.204761
20:45:09 (3764822): called boinc_finish(0)

</stderr_txt>
]]>

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