Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:08:04 (2542598): wrapper (7.7.26015): starting
19:08:04 (2542598): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 19:08:04] Arguments: --nthreads 3
[2025-10-12 19:08:04] Threads: 3
[2025-10-12 19:08:04] Checking for CVMFS
[2025-10-12 19:08:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:08:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:08:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:08:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:08:05] 2.9.2.0 1632445 3092 83164 151627 0 57 28867426 36864000 0 130560 0 2370215 99.990 112067 892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 19:08:05] CVMFS is ok
[2025-10-12 19:08:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:08:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:08:05] Further information can be found at the LHC@home message board.
[2025-10-12 19:08:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:08:05] Checking for apptainer binary...
[2025-10-12 19:08:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:08:05] Running /usr/bin/apptainer --version
[2025-10-12 19:08:05] apptainer version 1.4.1-1.1
[2025-10-12 19:08:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:08:05] atlasA223b
[2025-10-12 19:08:05] apptainer works
[2025-10-12 19:08:05] Set ATHENA_PROC_NUMBER=3
[2025-10-12 19:08:05] Set ATHENA_CORE_NUMBER=3
[2025-10-12 19:08:05] Starting ATLAS job with PandaID=6839317578
[2025-10-12 19:08:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:37:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:37:38] 2025-10-12 18:37:06,310 | INFO     | overall cleanup function is called
[2025-10-12 20:37:38] 2025-10-12 18:37:07,316 | INFO     | --- collectZombieJob: --- 10, [2552772]
[2025-10-12 20:37:38] 2025-10-12 18:37:07,316 | INFO     | zombie collector waiting for pid 2552772
[2025-10-12 20:37:38] 2025-10-12 18:37:07,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:37:38] 2025-10-12 18:37:07,316 | INFO     | collected zombie processes
[2025-10-12 20:37:38] 2025-10-12 18:37:07,316 | INFO     | will attempt to kill all subprocesses of pid=2552772
[2025-10-12 20:37:38] 2025-10-12 18:37:07,371 | INFO     | process IDs to be killed: [2552772] (in reverse order)
[2025-10-12 20:37:38] 2025-10-12 18:37:07,399 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:37:38] 2025-10-12 18:37:07,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:37:38] 2025-10-12 18:37:07,401 | INFO     | did not find any defunct processes belonging to 2552772
[2025-10-12 20:37:38] 2025-10-12 18:37:07,403 | INFO     | did not find any defunct processes belonging to 2552772
[2025-10-12 20:37:38] 2025-10-12 18:37:07,403 | INFO     | ready for new job
[2025-10-12 20:37:38] 2025-10-12 18:37:07,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:37:38] 2025-10-12 18:37:07,404 | INFO     | ***************************************
[2025-10-12 20:37:38] 2025-10-12 18:37:07,404 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:37:38] 2025-10-12 18:37:07,404 | INFO     | ***************************************
[2025-10-12 20:37:38] 2025-10-12 18:37:07,404 | INFO     | 
[2025-10-12 20:37:38] 2025-10-12 18:37:07,404 | INFO     | architecture information:
[2025-10-12 20:37:38] 2025-10-12 18:37:07,404 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:37:38] 2025-10-12 18:37:07,414 | INFO     | cat /etc/os-release:
[2025-10-12 20:37:38] NAME="CentOS Linux"
[2025-10-12 20:37:38] VERSION="7 (Core)"
[2025-10-12 20:37:38] ID="centos"
[2025-10-12 20:37:38] ID_LIKE="rhel fedora"
[2025-10-12 20:37:38] VERSION_ID="7"
[2025-10-12 20:37:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:37:38] ANSI_COLOR="0;31"
[2025-10-12 20:37:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:37:38] HOME_URL="https://www.centos.org/"
[2025-10-12 20:37:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:37:38] 
[2025-10-12 20:37:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:37:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:37:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:37:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:37:38] 
[2025-10-12 20:37:38] 2025-10-12 18:37:07,414 | INFO     | ***************************************
[2025-10-12 20:37:38] 2025-10-12 18:37:07,917 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:37:38] 2025-10-12 18:37:07,930 | INFO     | sufficient remaining disk space (376027742208 B)
[2025-10-12 20:37:38] 2025-10-12 18:37:07,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | INFO     | update_server=False
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | INFO     | aborting loop
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:37:38] 2025-10-12 18:37:07,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:37:38] 2025-10-12 18:37:08,288 | INFO     | all job control threads have been joined
[2025-10-12 20:37:38] 2025-10-12 18:37:08,675 | INFO     | all data control threads have been joined
[2025-10-12 20:37:38] 2025-10-12 18:37:08,876 | INFO     | all payload control threads have been joined
[2025-10-12 20:37:38] 2025-10-12 18:37:08,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:37:38] 2025-10-12 18:37:08,936 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:08,937 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:08,937 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,294 | INFO     | [job] control thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,409 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,426 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,664 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,674 | INFO     | [job] validate thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,681 | INFO     | [data] control thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,837 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:09,882 | INFO     | [payload] control thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:10,041 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:10,199 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:10,358 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:10,929 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:11,938 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:37:38] 2025-10-12 18:37:17,695 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:37:38] 2025-10-12 18:37:18,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799762761536)>', '<ExcThread(monitor, started 139799256078080)>']
[2025-10-12 20:37:38] 2025-10-12 18:37:23,180 | INFO     | all workflow threads have been joined
[2025-10-12 20:37:38] 2025-10-12 18:37:23,180 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:37:38] 2025-10-12 18:37:23,180 | INFO     | traces error code: 0
[2025-10-12 20:37:38] 2025-10-12 18:37:23,180 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:37:38] 2025-10-12 18:37:37,936 | INFO     | PID=2546326 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:37:38] 2025-10-12 18:37:37,936 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:37:38] 2025-10-12 18:37:37,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:37:38] 2025-10-12 18:37:37,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:37:38] 2025-10-12 18:37:37,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:37:38] 2025-10-12 18:37:37,936 | INFO     | [monitor] control thread has ended
[2025-10-12 20:37:38] 2025-10-12 18:37:37,985 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:37:38] 2025-10-12 18:37:37,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:37:38] 2025-10-12 18:37:37,990 [wrapper] pilotpid: 2546326
[2025-10-12 20:37:38] 2025-10-12 18:37:37,993 [wrapper] Pilot exit status: 0
[2025-10-12 20:37:38] 2025-10-12 18:37:38,000 [wrapper] pandaids: 6839317578
[2025-10-12 20:37:38] 2025-10-12 18:37:38,020 [wrapper] cleanup supervisor_pilot 2565548 2546327
[2025-10-12 20:37:38] 2025-10-12 18:37:38,022 [wrapper] Test setup, not cleaning
[2025-10-12 20:37:38] 2025-10-12 18:37:38,025 [wrapper] apfmon messages muted
[2025-10-12 20:37:38] 2025-10-12 18:37:38,027 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:37:38] 2025-10-12 18:37:38,030 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:37:38]  *** Error codes and diagnostics ***
[2025-10-12 20:37:38]     "exeErrorCode": 0,
[2025-10-12 20:37:38]     "exeErrorDiag": "",
[2025-10-12 20:37:38]     "pilotErrorCode": 0,
[2025-10-12 20:37:38]     "pilotErrorDiag": "",
[2025-10-12 20:37:38]  *** Listing of results directory ***
[2025-10-12 20:37:38] total 415328
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc      5112 Oct 12 04:55 queuedata.json
[2025-10-12 20:37:38] -rwx------ 1 boinc boinc     36292 Oct 12 04:56 runpilot2-wrapper.sh
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:37:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:08 run_atlas
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:08 job.xml
[2025-10-12 20:37:38] -rw-r--r-- 2 boinc boinc 221343470 Oct 12 19:08 EVNT.46676267._003194.pool.root.1
[2025-10-12 20:37:38] -rw-r--r-- 2 boinc boinc    569677 Oct 12 19:08 input.tar.gz
[2025-10-12 20:37:38] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:08 start_atlas.sh
[2025-10-12 20:37:38] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:08 shared
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:08 boinc_setup_complete
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc      6449 Oct 12 19:08 init_data.xml
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:08 boinc_lockfile
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc      2550 Oct 12 19:08 pandaJob.out
[2025-10-12 20:37:38] -rw------- 1 boinc boinc    975528 Oct 12 19:08 agis_schedconf.cvmfs.json
[2025-10-12 20:37:38] -rw------- 1 boinc boinc   1560580 Oct 12 19:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:37:38] drwx------ 5 boinc boinc      4096 Oct 12 19:08 pilot3
[2025-10-12 20:37:38] -rw------- 1 boinc boinc 197996232 Oct 12 20:36 HITS.46676269._069617.pool.root.1
[2025-10-12 20:37:38] -rw------- 1 boinc boinc        95 Oct 12 20:36 pilot_heartbeat.json
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc       530 Oct 12 20:36 boinc_task_state.xml
[2025-10-12 20:37:38] -rw------- 1 boinc boinc      1018 Oct 12 20:36 memory_monitor_summary.json
[2025-10-12 20:37:38] -rw------- 1 boinc boinc    254111 Oct 12 20:37 log.46676269._069617.job.log.tgz.1
[2025-10-12 20:37:38] -rw------- 1 boinc boinc      7754 Oct 12 20:37 heartbeat.json
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:37 boinc_mmap_file
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:37 wrapper_checkpoint.txt
[2025-10-12 20:37:38] -rw------- 1 boinc boinc       747 Oct 12 20:37 pilotlog.txt
[2025-10-12 20:37:38] -rw------- 1 boinc boinc    778170 Oct 12 20:37 log.46676269._069617.job.log.1
[2025-10-12 20:37:38] -rw------- 1 boinc boinc       357 Oct 12 20:37 output.list
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:37 runtime_log
[2025-10-12 20:37:38] -rw------- 1 boinc boinc   1054720 Oct 12 20:37 result.tar.gz
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc      8797 Oct 12 20:37 runtime_log.err
[2025-10-12 20:37:38] -rw------- 1 boinc boinc       662 Oct 12 20:37 lYlMDmOR1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsOiNDm63cWDm.diag
[2025-10-12 20:37:38] -rw-r--r-- 1 boinc boinc     10711 Oct 12 20:37 stderr.txt
[2025-10-12 20:37:38] HITS file was successfully produced:
[2025-10-12 20:37:38] -rw------- 1 boinc boinc 197996232 Oct 12 20:36 shared/HITS.pool.root.1
[2025-10-12 20:37:38]  *** Contents of shared directory: ***
[2025-10-12 20:37:38] total 411128
[2025-10-12 20:37:38] -rw-r--r-- 2 boinc boinc 221343470 Oct 12 19:08 ATLAS.root_0
[2025-10-12 20:37:38] -rw-r--r-- 2 boinc boinc    569677 Oct 12 19:08 input.tar.gz
[2025-10-12 20:37:38] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:08 start_atlas.sh
[2025-10-12 20:37:38] -rw------- 1 boinc boinc 197996232 Oct 12 20:36 HITS.pool.root.1
[2025-10-12 20:37:38] -rw------- 1 boinc boinc   1054720 Oct 12 20:37 result.tar.gz
20:38:00 (2542598): run_atlas exited; CPU time 15171.473306
20:38:00 (2542598): called boinc_finish(0)

</stderr_txt>
]]>

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