Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:40:45 (921901): wrapper (7.7.26015): starting
02:40:45 (921901): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 02:40:45] Arguments: --nthreads 4
[2025-10-13 02:40:45] Threads: 4
[2025-10-13 02:40:45] Checking for CVMFS
[2025-10-13 02:40:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:40:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:40:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:40:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:40:45] 2.9.2.0 3256619 5125 98776 151642 1 57 3517882 36864001 0 130560 0 4589696 99.992 172083 759 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 02:40:45] CVMFS is ok
[2025-10-13 02:40:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:40:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:40:45] Further information can be found at the LHC@home message board.
[2025-10-13 02:40:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:40:45] Checking for apptainer binary...
[2025-10-13 02:40:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:40:45] Running /usr/bin/apptainer --version
[2025-10-13 02:40:45] apptainer version 1.4.1-1.1
[2025-10-13 02:40:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:40:45] thA330
[2025-10-13 02:40:45] apptainer works
[2025-10-13 02:40:45] Set ATHENA_PROC_NUMBER=4
[2025-10-13 02:40:45] Set ATHENA_CORE_NUMBER=4
[2025-10-13 02:40:45] Starting ATLAS job with PandaID=6839588845
[2025-10-13 02:40:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:54:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | job 6839588845 has completed (purged errors)
[2025-10-13 03:54:04] 2025-10-13 01:53:34,332 | INFO     | overall cleanup function is called
[2025-10-13 03:54:04] 2025-10-13 01:53:35,339 | INFO     | --- collectZombieJob: --- 10, [932277]
[2025-10-13 03:54:04] 2025-10-13 01:53:35,339 | INFO     | zombie collector waiting for pid 932277
[2025-10-13 03:54:04] 2025-10-13 01:53:35,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:54:04] 2025-10-13 01:53:35,339 | INFO     | collected zombie processes
[2025-10-13 03:54:04] 2025-10-13 01:53:35,339 | INFO     | will attempt to kill all subprocesses of pid=932277
[2025-10-13 03:54:04] 2025-10-13 01:53:35,386 | INFO     | process IDs to be killed: [932277] (in reverse order)
[2025-10-13 03:54:04] 2025-10-13 01:53:35,420 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:54:04] 2025-10-13 01:53:35,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:54:04] 2025-10-13 01:53:35,423 | INFO     | did not find any defunct processes belonging to 932277
[2025-10-13 03:54:04] 2025-10-13 01:53:35,424 | INFO     | did not find any defunct processes belonging to 932277
[2025-10-13 03:54:04] 2025-10-13 01:53:35,424 | INFO     | ready for new job
[2025-10-13 03:54:04] 2025-10-13 01:53:35,424 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:54:04] 2025-10-13 01:53:35,425 | INFO     | ***************************************
[2025-10-13 03:54:04] 2025-10-13 01:53:35,425 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:54:04] 2025-10-13 01:53:35,425 | INFO     | ***************************************
[2025-10-13 03:54:04] 2025-10-13 01:53:35,425 | INFO     | 
[2025-10-13 03:54:04] 2025-10-13 01:53:35,426 | INFO     | architecture information:
[2025-10-13 03:54:04] 2025-10-13 01:53:35,426 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:54:04] 2025-10-13 01:53:35,440 | INFO     | cat /etc/os-release:
[2025-10-13 03:54:04] NAME="CentOS Linux"
[2025-10-13 03:54:04] VERSION="7 (Core)"
[2025-10-13 03:54:04] ID="centos"
[2025-10-13 03:54:04] ID_LIKE="rhel fedora"
[2025-10-13 03:54:04] VERSION_ID="7"
[2025-10-13 03:54:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:54:04] ANSI_COLOR="0;31"
[2025-10-13 03:54:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:54:04] HOME_URL="https://www.centos.org/"
[2025-10-13 03:54:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:54:04] 
[2025-10-13 03:54:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:54:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:54:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:54:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:54:04] 
[2025-10-13 03:54:04] 2025-10-13 01:53:35,440 | INFO     | ***************************************
[2025-10-13 03:54:04] 2025-10-13 01:53:35,943 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:54:04] 2025-10-13 01:53:35,958 | INFO     | sufficient remaining disk space (255112249344 B)
[2025-10-13 03:54:04] 2025-10-13 01:53:35,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:54:04] 2025-10-13 01:53:35,958 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | INFO     | update_server=False
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:54:04] 2025-10-13 01:53:35,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:54:04] 2025-10-13 01:53:36,288 | INFO     | all data control threads have been joined
[2025-10-13 03:54:04] 2025-10-13 01:53:36,394 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:54:04] 2025-10-13 01:53:36,394 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:54:04] 2025-10-13 01:53:36,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:54:04] 2025-10-13 01:53:36,394 | INFO     | will abort loop
[2025-10-13 03:54:04] 2025-10-13 01:53:36,534 | INFO     | all job control threads have been joined
[2025-10-13 03:54:04] 2025-10-13 01:53:36,964 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:36,964 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,007 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,293 | INFO     | [data] control thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,384 | INFO     | all payload control threads have been joined
[2025-10-13 03:54:04] 2025-10-13 01:53:37,399 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,402 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,539 | INFO     | [job] control thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,936 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:37,964 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:38,083 | INFO     | [job] validate thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:38,213 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:38,319 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:38,389 | INFO     | [payload] control thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:38,454 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:39,965 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:46,475 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:54:04] 2025-10-13 01:53:47,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:54:04] 2025-10-13 01:53:58,401 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:54:04] 2025-10-13 01:53:59,703 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535494137664)>', '<ExcThread(monitor, started 140534416930560)>']
[2025-10-13 03:54:04] 2025-10-13 01:54:00,080 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:54:04] 2025-10-13 01:54:00,080 | INFO     | [monitor] control thread has ended
[2025-10-13 03:54:04] 2025-10-13 01:54:04,729 | INFO     | all workflow threads have been joined
[2025-10-13 03:54:04] 2025-10-13 01:54:04,729 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:54:04] 2025-10-13 01:54:04,729 | INFO     | traces error code: 0
[2025-10-13 03:54:04] 2025-10-13 01:54:04,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:54:04] 2025-10-13 01:54:04,805 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:54:04] 2025-10-13 01:54:04,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:54:04] 2025-10-13 01:54:04,813 [wrapper] pilotpid: 925694
[2025-10-13 03:54:04] 2025-10-13 01:54:04,818 [wrapper] Pilot exit status: 0
[2025-10-13 03:54:04] 2025-10-13 01:54:04,829 [wrapper] pandaids: 6839588845
[2025-10-13 03:54:04] 2025-10-13 01:54:04,852 [wrapper] cleanup supervisor_pilot  942971 925695
[2025-10-13 03:54:04] 2025-10-13 01:54:04,856 [wrapper] Test setup, not cleaning
[2025-10-13 03:54:04] 2025-10-13 01:54:04,860 [wrapper] apfmon messages muted
[2025-10-13 03:54:04] 2025-10-13 01:54:04,864 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:54:04] 2025-10-13 01:54:04,868 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:54:04]  *** Error codes and diagnostics ***
[2025-10-13 03:54:04]     "exeErrorCode": 0,
[2025-10-13 03:54:04]     "exeErrorDiag": "",
[2025-10-13 03:54:04]     "pilotErrorCode": 0,
[2025-10-13 03:54:04]     "pilotErrorDiag": "",
[2025-10-13 03:54:04]  *** Listing of results directory ***
[2025-10-13 03:54:04] total 415184
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc    557409 Oct 12 07:26 pilot3.tar.gz
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:31 queuedata.json
[2025-10-13 03:54:04] -rwx------ 1 boinc boinc     36292 Oct 12 07:31 runpilot2-wrapper.sh
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:54:04] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:40 run_atlas
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:40 job.xml
[2025-10-13 03:54:04] -rw-r--r-- 2 boinc boinc 218820376 Oct 13 02:40 EVNT.46676267._004324.pool.root.1
[2025-10-13 03:54:04] -rw-r--r-- 2 boinc boinc    569685 Oct 13 02:40 input.tar.gz
[2025-10-13 03:54:04] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:40 start_atlas.sh
[2025-10-13 03:54:04] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:40 shared
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:40 boinc_setup_complete
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc      6454 Oct 13 02:40 init_data.xml
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:40 boinc_lockfile
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:40 pandaJob.out
[2025-10-13 03:54:04] -rw------- 1 boinc boinc    975603 Oct 13 02:40 agis_schedconf.cvmfs.json
[2025-10-13 03:54:04] -rw------- 1 boinc boinc   1560580 Oct 13 02:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:54:04] drwx------ 5 boinc boinc      4096 Oct 13 02:40 pilot3
[2025-10-13 03:54:04] -rw------- 1 boinc boinc 200608833 Oct 13 03:53 HITS.46676269._072037.pool.root.1
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:53 boinc_task_state.xml
[2025-10-13 03:54:04] -rw------- 1 boinc boinc        95 Oct 13 03:53 pilot_heartbeat.json
[2025-10-13 03:54:04] -rw------- 1 boinc boinc      1022 Oct 13 03:53 memory_monitor_summary.json
[2025-10-13 03:54:04] -rw------- 1 boinc boinc    267119 Oct 13 03:53 log.46676269._072037.job.log.tgz.1
[2025-10-13 03:54:04] -rw------- 1 boinc boinc      7767 Oct 13 03:53 heartbeat.json
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:53 boinc_mmap_file
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:53 wrapper_checkpoint.txt
[2025-10-13 03:54:04] -rw------- 1 boinc boinc      4814 Oct 13 03:54 pilotlog.txt
[2025-10-13 03:54:04] -rw------- 1 boinc boinc    646188 Oct 13 03:54 log.46676269._072037.job.log.1
[2025-10-13 03:54:04] -rw------- 1 boinc boinc       357 Oct 13 03:54 output.list
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:54 runtime_log
[2025-10-13 03:54:04] -rw------- 1 boinc boinc    931840 Oct 13 03:54 result.tar.gz
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc      8777 Oct 13 03:54 runtime_log.err
[2025-10-13 03:54:04] -rw------- 1 boinc boinc       658 Oct 13 03:54 BMeKDm4q3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLJTMDmJptVNo.diag
[2025-10-13 03:54:04] -rw-r--r-- 1 boinc boinc     11652 Oct 13 03:54 stderr.txt
[2025-10-13 03:54:04] HITS file was successfully produced:
[2025-10-13 03:54:04] -rw------- 1 boinc boinc 200608833 Oct 13 03:53 shared/HITS.pool.root.1
[2025-10-13 03:54:04]  *** Contents of shared directory: ***
[2025-10-13 03:54:04] total 411096
[2025-10-13 03:54:04] -rw-r--r-- 2 boinc boinc 218820376 Oct 13 02:40 ATLAS.root_0
[2025-10-13 03:54:04] -rw-r--r-- 2 boinc boinc    569685 Oct 13 02:40 input.tar.gz
[2025-10-13 03:54:04] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:40 start_atlas.sh
[2025-10-13 03:54:04] -rw------- 1 boinc boinc 200608833 Oct 13 03:53 HITS.pool.root.1
[2025-10-13 03:54:04] -rw------- 1 boinc boinc    931840 Oct 13 03:54 result.tar.gz
03:54:06 (921901): run_atlas exited; CPU time 16480.693248
03:54:06 (921901): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN