Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:35:40 (3648833): wrapper (7.7.26015): starting
05:35:40 (3648833): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 05:35:40] Arguments: --nthreads 9
[2025-10-12 05:35:40] Threads: 9
[2025-10-12 05:35:40] Checking for CVMFS
[2025-10-12 05:35:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:35:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:35:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:35:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:35:41] 2.13.2.0 891182 137915 535732 151615 2 397 31816007 32935937 60806 16776704 0 476983084 99.674 402951465 16816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 05:35:41] CVMFS is ok
[2025-10-12 05:35:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:35:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:35:41] Further information can be found at the LHC@home message board.
[2025-10-12 05:35:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:35:41] Checking for apptainer binary...
[2025-10-12 05:35:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:35:41] Running /usr/bin/apptainer --version
[2025-10-12 05:35:41] apptainer version 1.4.3-1.el9
[2025-10-12 05:35:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:35:42] c7-3-29.aglt2.org
[2025-10-12 05:35:42] apptainer works
[2025-10-12 05:35:42] Set ATHENA_PROC_NUMBER=9
[2025-10-12 05:35:42] Set ATHENA_CORE_NUMBER=9
[2025-10-12 05:35:42] Starting ATLAS job with PandaID=6838990107
[2025-10-12 05:35:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:05:26]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:05:26] 2025-10-12 13:04:50,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:05:26] 2025-10-12 13:04:51,357 | INFO     | time since job start (12495s) is within the limit (172800.0s)
[2025-10-12 09:05:26] 2025-10-12 13:04:51,951 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 09:05:26] 2025-10-12 13:04:51,956 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3404.359666666664
[2025-10-12 09:05:26] 2025-10-12 13:04:51,969 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838990107/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:05:26] 2025-10-12 13:04:51,969 | INFO     | extracted standard info from prmon json
[2025-10-12 09:05:26] 2025-10-12 13:04:51,970 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:05:26] 2025-10-12 13:04:51,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:05:26] 2025-10-12 13:04:51,970 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:05:26] 2025-10-12 13:04:51,970 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:05:26] 2025-10-12 13:04:51,997 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:05:26] 2025-10-12 13:04:51,998 | INFO     | sum of square deviations: 2593884219.822654
[2025-10-12 09:05:26] 2025-10-12 13:04:51,999 | INFO     | sum of deviations: 10550583134.369448
[2025-10-12 09:05:26] 2025-10-12 13:04:51,999 | INFO     | mean x: 1760268048.0295568
[2025-10-12 09:05:26] 2025-10-12 13:04:51,999 | INFO     | mean y: 2310618.438423645
[2025-10-12 09:05:26] 2025-10-12 13:04:51,999 | INFO     | -- intersect: -7157551891.06859
[2025-10-12 09:05:26] 2025-10-12 13:04:51,999 | INFO     | intersect: -7157551891.06859
[2025-10-12 09:05:26] 2025-10-12 13:04:51,999 | INFO     | chi2: 2.432420656965601
[2025-10-12 09:05:26] 2025-10-12 13:04:52,004 | INFO     | sum of square deviations: 2406896497.3181987
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | sum of deviations: 10229847555.727282
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | mean x: 1760267895.530303
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | mean y: 2310357.212121212
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | -- intersect: -7479221253.548814
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | intersect: -7479221253.548814
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | chi2: 2.433202941719824
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | current chi2=2.433202941719824 (change=-0.032160751142395486 %)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | right removable region: 197
[2025-10-12 09:05:26] 2025-10-12 13:04:52,005 | INFO     | sum of square deviations: 2406892837.3181987
[2025-10-12 09:05:26] 2025-10-12 13:04:52,006 | INFO     | sum of deviations: -27644208359.96971
[2025-10-12 09:05:26] 2025-10-12 13:04:52,006 | INFO     | mean x: 1760268200.530303
[2025-10-12 09:05:26] 2025-10-12 13:04:52,006 | INFO     | mean y: 2341533.8282828284
[2025-10-12 09:05:26] 2025-10-12 13:04:52,006 | INFO     | -- intersect: 20219785430.959908
[2025-10-12 09:05:26] 2025-10-12 13:04:52,006 | INFO     | intersect: 20219785430.959908
[2025-10-12 09:05:26] 2025-10-12 13:04:52,007 | INFO     | chi2: 0.4110430256440416
[2025-10-12 09:05:26] 2025-10-12 13:04:52,007 | INFO     | current chi2=0.4110430256440416 (change=83.1014826951515 %)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,007 | INFO     | sum of square deviations: 2229110929.81348
[2025-10-12 09:05:26] 2025-10-12 13:04:52,026 | INFO     | sum of deviations: -30429668765.502594
[2025-10-12 09:05:26] 2025-10-12 13:04:52,026 | INFO     | mean x: 1760268353.031088
[2025-10-12 09:05:26] 2025-10-12 13:04:52,026 | INFO     | mean y: 2343834.917098446
[2025-10-12 09:05:26] 2025-10-12 13:04:52,026 | INFO     | -- intersect: 24031826712.924778
[2025-10-12 09:05:26] 2025-10-12 13:04:52,026 | INFO     | intersect: 24031826712.924778
[2025-10-12 09:05:26] 2025-10-12 13:04:52,027 | INFO     | chi2: 0.3295368432233768
[2025-10-12 09:05:26] 2025-10-12 13:04:52,027 | INFO     | current chi2=0.3295368432233768 (change=19.829112121038204 %)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,027 | INFO     | left removable region: 20
[2025-10-12 09:05:26] 2025-10-12 13:04:52,027 | INFO     | sum of square deviations: 1719414813.9096012
[2025-10-12 09:05:26] 2025-10-12 13:04:52,028 | INFO     | sum of deviations: -13565574051.073454
[2025-10-12 09:05:26] 2025-10-12 13:04:52,028 | INFO     | mean x: 1760268475.022599
[2025-10-12 09:05:26] 2025-10-12 13:04:52,028 | INFO     | mean y: 2328487.768361582
[2025-10-12 09:05:26] 2025-10-12 13:04:52,028 | INFO     | -- intersect: 13890223459.077278
[2025-10-12 09:05:26] 2025-10-12 13:04:52,028 | INFO     | intersect: 13890223459.077278
[2025-10-12 09:05:26] 2025-10-12 13:04:52,029 | INFO     | chi2: 0.23585947549316194
[2025-10-12 09:05:26] 2025-10-12 13:04:52,029 | INFO     | -- intersect: 13890223459.077278
[2025-10-12 09:05:26] 2025-10-12 13:04:52,029 | INFO     | current memory leak: -7.89 B/s (using 177 data points, chi2=0.24)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,029 | INFO     | could have reported an average CPU frequency of 3356 MHz (10 samples)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,029 | INFO     | ..............................
[2025-10-12 09:05:26] 2025-10-12 13:04:52,029 | INFO     | . Timing measurements:
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . get job = 0 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . initial setup = 5 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . payload setup = 19 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . stage-in = 0 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . payload execution = 12392 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . stage-out = 3 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | . log creation = 0 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,030 | INFO     | ..............................
[2025-10-12 09:05:26] 2025-10-12 13:04:52,112 | INFO     | 
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | job summary report
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | --------------------------------------------------
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | PanDA job id: 6838990107
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | task id: 46676269
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | errors: (none)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | pilot state: finished 
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | transexitcode: 0
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | exeerrorcode: 0
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | exeerrordiag: 
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | exitcode: 0
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | exitmsg: OK
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | cpuconsumptiontime: 28928 s
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | nevents: 400
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | neventsw: 0
[2025-10-12 09:05:26] 2025-10-12 13:04:52,113 | INFO     | pid: 3666139
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | pgrp: 3666139
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | corecount: 9
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | event service: False
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 3: 2348913, 13: 2348941, 24: 2349199, 25: 2349415, 35: 2349443, 12416: 2379182, 12420: 2388180, 12424: 2388236, 12439: 
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | --------------------------------------------------
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | 
[2025-10-12 09:05:26] 2025-10-12 13:04:52,114 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 09:05:26] 2025-10-12 13:04:52,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,257 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,259 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:05:26] 2025-10-12 13:04:52,259 | INFO     | job 6838990107 has completed (purged errors)
[2025-10-12 09:05:26] 2025-10-12 13:04:52,259 | INFO     | overall cleanup function is called
[2025-10-12 09:05:26] 2025-10-12 13:04:53,282 | INFO     | --- collectZombieJob: --- 10, [3666139]
[2025-10-12 09:05:26] 2025-10-12 13:04:53,282 | INFO     | zombie collector waiting for pid 3666139
[2025-10-12 09:05:26] 2025-10-12 13:04:53,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:05:26] 2025-10-12 13:04:53,282 | INFO     | collected zombie processes
[2025-10-12 09:05:26] 2025-10-12 13:04:53,282 | INFO     | will attempt to kill all subprocesses of pid=3666139
[2025-10-12 09:05:26] 2025-10-12 13:04:54,316 | INFO     | process IDs to be killed: [3666139] (in reverse order)
[2025-10-12 09:05:26] 2025-10-12 13:04:54,687 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:05:26] 2025-10-12 13:04:54,687 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:05:26] 2025-10-12 13:04:54,720 | INFO     | did not find any defunct processes belonging to 3666139
[2025-10-12 09:05:26] 2025-10-12 13:04:54,751 | INFO     | did not find any defunct processes belonging to 3666139
[2025-10-12 09:05:26] 2025-10-12 13:04:54,751 | INFO     | ready for new job
[2025-10-12 09:05:26] 2025-10-12 13:04:54,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:05:26] 2025-10-12 13:04:54,753 | INFO     | ***************************************
[2025-10-12 09:05:26] 2025-10-12 13:04:54,753 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:05:26] 2025-10-12 13:04:54,753 | INFO     | ***************************************
[2025-10-12 09:05:26] 2025-10-12 13:04:54,753 | INFO     | 
[2025-10-12 09:05:26] 2025-10-12 13:04:54,784 | INFO     | architecture information:
[2025-10-12 09:05:26] 2025-10-12 13:04:54,784 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:05:26] 2025-10-12 13:04:54,819 | INFO     | cat /etc/os-release:
[2025-10-12 09:05:26] NAME="CentOS Linux"
[2025-10-12 09:05:26] VERSION="7 (Core)"
[2025-10-12 09:05:26] ID="centos"
[2025-10-12 09:05:26] ID_LIKE="rhel fedora"
[2025-10-12 09:05:26] VERSION_ID="7"
[2025-10-12 09:05:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:05:26] ANSI_COLOR="0;31"
[2025-10-12 09:05:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:05:26] HOME_URL="https://www.centos.org/"
[2025-10-12 09:05:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:05:26] 
[2025-10-12 09:05:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:05:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:05:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:05:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:05:26] 
[2025-10-12 09:05:26] 2025-10-12 13:04:54,819 | INFO     | ***************************************
[2025-10-12 09:05:26] 2025-10-12 13:04:55,323 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 09:05:26] 2025-10-12 13:04:55,365 | INFO     | sufficient remaining disk space (73746350080 B)
[2025-10-12 09:05:26] 2025-10-12 13:04:55,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:05:26] 2025-10-12 13:04:55,365 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:05:26] 2025-10-12 13:04:55,365 | INFO     | update_server=False
[2025-10-12 09:05:26] 2025-10-12 13:04:55,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:05:26] 2025-10-12 13:04:55,472 | INFO     | all job control threads have been joined
[2025-10-12 09:05:26] 2025-10-12 13:04:55,523 | INFO     | all data control threads have been joined
[2025-10-12 09:05:26] 2025-10-12 13:04:56,156 | INFO     | all payload control threads have been joined
[2025-10-12 09:05:26] 2025-10-12 13:04:56,213 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:05:26] 2025-10-12 13:04:56,213 | INFO     | aborting loop
[2025-10-12 09:05:26] 2025-10-12 13:04:56,372 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:56,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:05:26] 2025-10-12 13:04:56,478 | INFO     | [job] control thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:56,529 | INFO     | [data] control thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:56,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:05:26] 2025-10-12 13:04:56,737 | INFO     | [job] validate thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:56,737 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:56,805 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:05:26] 2025-10-12 13:04:57,162 | INFO     | [payload] control thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,177 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,218 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,293 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,399 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,603 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:57,713 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:58,132 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:58,475 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:04:58,689 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:05:26] 2025-10-12 13:05:00,597 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:05:26] 2025-10-12 13:05:02,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140341304837952)>', '<ExcThread(monitor, started 140341023835904)>']
[2025-10-12 09:05:26] 2025-10-12 13:05:07,078 | INFO     | all workflow threads have been joined
[2025-10-12 09:05:26] 2025-10-12 13:05:07,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:05:26] 2025-10-12 13:05:07,078 | INFO     | traces error code: 0
[2025-10-12 09:05:26] 2025-10-12 13:05:07,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | INFO     | PID=3654385 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | INFO     | .. there are 85 such processes running
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 09:05:26] 2025-10-12 13:05:25,815 | INFO     | [monitor] control thread has ended
[2025-10-12 09:05:26] 2025-10-12 13:05:25,960 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:05:26] 2025-10-12 13:05:25,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:05:26] 2025-10-12 13:05:25,967 [wrapper] pilotpid: 3654385
[2025-10-12 09:05:26] 2025-10-12 13:05:25,969 [wrapper] Pilot exit status: 0
[2025-10-12 09:05:26] 2025-10-12 13:05:25,989 [wrapper] pandaids: 6838990107
[2025-10-12 09:05:26] 2025-10-12 13:05:26,171 [wrapper] cleanup supervisor_pilot  550886 3654386
[2025-10-12 09:05:26] 2025-10-12 13:05:26,177 [wrapper] Test setup, not cleaning
[2025-10-12 09:05:26] 2025-10-12 13:05:26,182 [wrapper] apfmon messages muted
[2025-10-12 09:05:26] 2025-10-12 13:05:26,186 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:05:26] 2025-10-12 13:05:26,197 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:05:26]  *** Error codes and diagnostics ***
[2025-10-12 09:05:26]     "exeErrorCode": 0,
[2025-10-12 09:05:26]     "exeErrorDiag": "",
[2025-10-12 09:05:26]     "pilotErrorCode": 0,
[2025-10-12 09:05:26]     "pilotErrorDiag": "",
[2025-10-12 09:05:26]  *** Listing of results directory ***
[2025-10-12 09:05:26] total 412684
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 18:04 pilot3.tar.gz
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 18:10 queuedata.json
[2025-10-12 09:05:26] -rwx------. 1 boincer umatlas     36292 Oct 11 18:10 runpilot2-wrapper.sh
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas       100 Oct 12 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:05:26] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 05:35 run_atlas
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas       105 Oct 12 05:35 job.xml
[2025-10-12 09:05:26] -rw-r--r--. 2 boincer umatlas 223045136 Oct 12 05:35 EVNT.46676267._002644.pool.root.1
[2025-10-12 09:05:26] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 05:35 shared
[2025-10-12 09:05:26] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 05:35 input.tar.gz
[2025-10-12 09:05:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:35 start_atlas.sh
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas         0 Oct 12 05:35 boinc_lockfile
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 05:35 pandaJob.out
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas    975536 Oct 12 05:36 agis_schedconf.cvmfs.json
[2025-10-12 09:05:26] drwx------. 5 boincer umatlas      4096 Oct 12 05:36 pilot3
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas      6936 Oct 12 09:00 init_data.xml
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas 191874149 Oct 12 09:03 HITS.46676269._065828.pool.root.1
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas       531 Oct 12 09:03 boinc_task_state.xml
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas      1045 Oct 12 09:04 memory_monitor_summary.json
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas   1560580 Oct 12 09:04 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas    441474 Oct 12 09:04 log.46676269._065828.job.log.tgz.1
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas        95 Oct 12 09:04 pilot_heartbeat.json
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas      7801 Oct 12 09:04 heartbeat.json
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 09:05 boinc_mmap_file
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas        28 Oct 12 09:05 wrapper_checkpoint.txt
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas       893 Oct 12 09:05 pilotlog.txt
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas   1440341 Oct 12 09:05 log.46676269._065828.job.log.1
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas       357 Oct 12 09:05 output.list
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:05 runtime_log
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas   1904640 Oct 12 09:05 result.tar.gz
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas       658 Oct 12 09:05 UpOODmoywR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRlhNDmkswiFo.diag
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas      8699 Oct 12 09:05 runtime_log.err
[2025-10-12 09:05:26] -rw-r--r--. 1 boincer umatlas     21227 Oct 12 09:05 stderr.txt
[2025-10-12 09:05:26] HITS file was successfully produced:
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas 191874149 Oct 12 09:03 shared/HITS.pool.root.1
[2025-10-12 09:05:26]  *** Contents of shared directory: ***
[2025-10-12 09:05:26] total 407644
[2025-10-12 09:05:26] -rw-r--r--. 2 boincer umatlas 223045136 Oct 12 05:35 ATLAS.root_0
[2025-10-12 09:05:26] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 05:35 input.tar.gz
[2025-10-12 09:05:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:35 start_atlas.sh
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas 191874149 Oct 12 09:03 HITS.pool.root.1
[2025-10-12 09:05:26] -rw-------. 1 boincer umatlas   1904640 Oct 12 09:05 result.tar.gz
09:05:28 (3648833): run_atlas exited; CPU time 29493.171151
09:05:28 (3648833): called boinc_finish(0)

</stderr_txt>
]]>

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