Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:52:40 (2707940): wrapper (7.7.26015): starting
23:52:40 (2707940): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 23:52:40] Arguments: --nthreads 3
[2025-10-12 23:52:40] Threads: 3
[2025-10-12 23:52:40] Checking for CVMFS
[2025-10-12 23:52:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:52:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:52:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:52:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:52:40] 2.9.2.0 1212649 4975 84580 151638 1 57 3810753 36864001 0 130560 0 3944660 99.991 170674 903 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:52:40] CVMFS is ok
[2025-10-12 23:52:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:52:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:52:40] Further information can be found at the LHC@home message board.
[2025-10-12 23:52:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:52:40] Checking for apptainer binary...
[2025-10-12 23:52:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:52:40] Running /usr/bin/apptainer --version
[2025-10-12 23:52:40] apptainer version 1.4.1-1.1
[2025-10-12 23:52:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:52:41] thA325a
[2025-10-12 23:52:41] apptainer works
[2025-10-12 23:52:41] Set ATHENA_PROC_NUMBER=3
[2025-10-12 23:52:41] Set ATHENA_CORE_NUMBER=3
[2025-10-12 23:52:41] Starting ATLAS job with PandaID=6839318412
[2025-10-12 23:52:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:13:57]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,708 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:13:57] 2025-10-12 23:13:11,709 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,709 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:13:57] 2025-10-12 23:13:11,709 | INFO     | job 6839318412 has completed (purged errors)
[2025-10-13 01:13:57] 2025-10-12 23:13:11,709 | INFO     | overall cleanup function is called
[2025-10-13 01:13:57] 2025-10-12 23:13:12,715 | INFO     | --- collectZombieJob: --- 10, [2718091]
[2025-10-13 01:13:57] 2025-10-12 23:13:12,715 | INFO     | zombie collector waiting for pid 2718091
[2025-10-13 01:13:57] 2025-10-12 23:13:12,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:13:57] 2025-10-12 23:13:12,716 | INFO     | collected zombie processes
[2025-10-13 01:13:57] 2025-10-12 23:13:12,716 | INFO     | will attempt to kill all subprocesses of pid=2718091
[2025-10-13 01:13:57] 2025-10-12 23:13:12,758 | INFO     | process IDs to be killed: [2718091] (in reverse order)
[2025-10-13 01:13:57] 2025-10-12 23:13:12,781 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:13:57] 2025-10-12 23:13:12,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:13:57] 2025-10-12 23:13:12,783 | INFO     | did not find any defunct processes belonging to 2718091
[2025-10-13 01:13:57] 2025-10-12 23:13:12,784 | INFO     | did not find any defunct processes belonging to 2718091
[2025-10-13 01:13:57] 2025-10-12 23:13:12,784 | INFO     | ready for new job
[2025-10-13 01:13:57] 2025-10-12 23:13:12,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:13:57] 2025-10-12 23:13:12,785 | INFO     | ***************************************
[2025-10-13 01:13:57] 2025-10-12 23:13:12,785 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:13:57] 2025-10-12 23:13:12,785 | INFO     | ***************************************
[2025-10-13 01:13:57] 2025-10-12 23:13:12,785 | INFO     | 
[2025-10-13 01:13:57] 2025-10-12 23:13:12,785 | INFO     | architecture information:
[2025-10-13 01:13:57] 2025-10-12 23:13:12,785 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:13:57] 2025-10-12 23:13:12,794 | INFO     | cat /etc/os-release:
[2025-10-13 01:13:57] NAME="CentOS Linux"
[2025-10-13 01:13:57] VERSION="7 (Core)"
[2025-10-13 01:13:57] ID="centos"
[2025-10-13 01:13:57] ID_LIKE="rhel fedora"
[2025-10-13 01:13:57] VERSION_ID="7"
[2025-10-13 01:13:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:13:57] ANSI_COLOR="0;31"
[2025-10-13 01:13:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:13:57] HOME_URL="https://www.centos.org/"
[2025-10-13 01:13:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:13:57] 
[2025-10-13 01:13:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:13:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:13:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:13:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:13:57] 
[2025-10-13 01:13:57] 2025-10-12 23:13:12,794 | INFO     | ***************************************
[2025-10-13 01:13:57] 2025-10-12 23:13:13,297 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:13:57] 2025-10-12 23:13:13,310 | INFO     | sufficient remaining disk space (255673237504 B)
[2025-10-13 01:13:57] 2025-10-12 23:13:13,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:13:57] 2025-10-12 23:13:13,310 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:13:57] 2025-10-12 23:13:13,310 | INFO     | update_server=False
[2025-10-13 01:13:57] 2025-10-12 23:13:13,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:13:57] 2025-10-12 23:13:13,311 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:13:57] 2025-10-12 23:13:13,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:13:57] 2025-10-12 23:13:13,457 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 01:13:57] 2025-10-12 23:13:13,457 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 01:13:57] 2025-10-12 23:13:13,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:13:57] 2025-10-12 23:13:13,457 | INFO     | will abort loop
[2025-10-13 01:13:57] 2025-10-12 23:13:13,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:13:57] 2025-10-12 23:13:14,316 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:14,316 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:14,376 | INFO     | all data control threads have been joined
[2025-10-13 01:13:57] 2025-10-12 23:13:14,463 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:14,477 | INFO     | all job control threads have been joined
[2025-10-13 01:13:57] 2025-10-12 23:13:14,593 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:14,717 | INFO     | all payload control threads have been joined
[2025-10-13 01:13:57] 2025-10-12 23:13:14,828 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,382 | INFO     | [data] control thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,424 | INFO     | [job] validate thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,483 | INFO     | [job] control thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,510 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,528 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,548 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,567 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,722 | INFO     | [payload] control thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:15,890 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:17,318 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:23,692 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:13:57] 2025-10-12 23:13:24,698 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:13:57] 2025-10-12 23:13:43,961 | INFO     | PID=2711657 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:13:57] 2025-10-12 23:13:43,961 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:13:57] 2025-10-12 23:13:43,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:13:57] 2025-10-12 23:13:43,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:13:57] 2025-10-12 23:13:51,280 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:13:57] 2025-10-12 23:13:52,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612105606976)>', '<ExcThread(monitor, started 140611751487232)>']
[2025-10-13 01:13:57] 2025-10-12 23:13:53,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:13:57] 2025-10-12 23:13:53,010 | INFO     | [monitor] control thread has ended
[2025-10-13 01:13:57] 2025-10-12 23:13:57,416 | INFO     | all workflow threads have been joined
[2025-10-13 01:13:57] 2025-10-12 23:13:57,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:13:57] 2025-10-12 23:13:57,416 | INFO     | traces error code: 0
[2025-10-13 01:13:57] 2025-10-12 23:13:57,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:13:57] 2025-10-12 23:13:57,465 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:13:57] 2025-10-12 23:13:57,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:13:57] 2025-10-12 23:13:57,469 [wrapper] pilotpid: 2711657
[2025-10-13 01:13:57] 2025-10-12 23:13:57,472 [wrapper] Pilot exit status: 0
[2025-10-13 01:13:57] 2025-10-12 23:13:57,480 [wrapper] pandaids: 6839318412
[2025-10-13 01:13:57] 2025-10-12 23:13:57,495 [wrapper] cleanup supervisor_pilot 2730566 2711658
[2025-10-13 01:13:57] 2025-10-12 23:13:57,498 [wrapper] Test setup, not cleaning
[2025-10-13 01:13:57] 2025-10-12 23:13:57,500 [wrapper] apfmon messages muted
[2025-10-13 01:13:57] 2025-10-12 23:13:57,502 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:13:57] 2025-10-12 23:13:57,504 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:13:57]  *** Error codes and diagnostics ***
[2025-10-13 01:13:57]     "exeErrorCode": 0,
[2025-10-13 01:13:57]     "exeErrorDiag": "",
[2025-10-13 01:13:57]     "pilotErrorCode": 0,
[2025-10-13 01:13:57]     "pilotErrorDiag": "",
[2025-10-13 01:13:57]  *** Listing of results directory ***
[2025-10-13 01:13:57] total 409956
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:00 queuedata.json
[2025-10-13 01:13:57] -rwx------ 1 boinc boinc     36292 Oct 12 05:00 runpilot2-wrapper.sh
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:13:57] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:52 run_atlas
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:52 job.xml
[2025-10-13 01:13:57] -rw-r--r-- 2 boinc boinc 223459620 Oct 12 23:52 EVNT.46676267._003206.pool.root.1
[2025-10-13 01:13:57] -rw-r--r-- 2 boinc boinc    569676 Oct 12 23:52 input.tar.gz
[2025-10-13 01:13:57] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:52 start_atlas.sh
[2025-10-13 01:13:57] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:52 shared
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:52 boinc_setup_complete
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc      6439 Oct 12 23:52 init_data.xml
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:52 boinc_lockfile
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:52 pandaJob.out
[2025-10-13 01:13:57] -rw------- 1 boinc boinc    975528 Oct 12 23:52 agis_schedconf.cvmfs.json
[2025-10-13 01:13:57] -rw------- 1 boinc boinc   1560580 Oct 12 23:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:13:57] drwx------ 5 boinc boinc      4096 Oct 12 23:52 pilot3
[2025-10-13 01:13:57] -rw------- 1 boinc boinc 190548649 Oct 13 01:12 HITS.46676269._069833.pool.root.1
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc       529 Oct 13 01:12 boinc_task_state.xml
[2025-10-13 01:13:57] -rw------- 1 boinc boinc      1021 Oct 13 01:13 memory_monitor_summary.json
[2025-10-13 01:13:57] -rw------- 1 boinc boinc    236984 Oct 13 01:13 log.46676269._069833.job.log.tgz.1
[2025-10-13 01:13:57] -rw------- 1 boinc boinc        95 Oct 13 01:13 pilot_heartbeat.json
[2025-10-13 01:13:57] -rw------- 1 boinc boinc      7762 Oct 13 01:13 heartbeat.json
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:13 boinc_mmap_file
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:13 wrapper_checkpoint.txt
[2025-10-13 01:13:57] -rw------- 1 boinc boinc      5010 Oct 13 01:13 pilotlog.txt
[2025-10-13 01:13:57] -rw------- 1 boinc boinc    711214 Oct 13 01:13 log.46676269._069833.job.log.1
[2025-10-13 01:13:57] -rw------- 1 boinc boinc       357 Oct 13 01:13 output.list
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:13 runtime_log
[2025-10-13 01:13:57] -rw------- 1 boinc boinc    962560 Oct 13 01:13 result.tar.gz
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc      8782 Oct 13 01:13 runtime_log.err
[2025-10-13 01:13:57] -rw------- 1 boinc boinc       659 Oct 13 01:13 K4HKDmTV1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyQiNDmdSWNXo.diag
[2025-10-13 01:13:57] -rw-r--r-- 1 boinc boinc     12672 Oct 13 01:13 stderr.txt
[2025-10-13 01:13:57] HITS file was successfully produced:
[2025-10-13 01:13:57] -rw------- 1 boinc boinc 190548649 Oct 13 01:12 shared/HITS.pool.root.1
[2025-10-13 01:13:57]  *** Contents of shared directory: ***
[2025-10-13 01:13:57] total 405832
[2025-10-13 01:13:57] -rw-r--r-- 2 boinc boinc 223459620 Oct 12 23:52 ATLAS.root_0
[2025-10-13 01:13:57] -rw-r--r-- 2 boinc boinc    569676 Oct 12 23:52 input.tar.gz
[2025-10-13 01:13:57] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:52 start_atlas.sh
[2025-10-13 01:13:57] -rw------- 1 boinc boinc 190548649 Oct 13 01:12 HITS.pool.root.1
[2025-10-13 01:13:57] -rw------- 1 boinc boinc    962560 Oct 13 01:13 result.tar.gz
01:13:59 (2707940): run_atlas exited; CPU time 13751.531399
01:13:59 (2707940): called boinc_finish(0)

</stderr_txt>
]]>

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