Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:34:52 (307658): wrapper (7.7.26015): starting
20:34:52 (307658): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 20:34:52] Arguments: --nthreads 4
[2025-10-12 20:34:52] Threads: 4
[2025-10-12 20:34:52] Checking for CVMFS
[2025-10-12 20:34:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:34:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:34:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:34:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:34:52] 2.9.2.0 4261 856 81940 151631 2 56 32986702 36864000 0 130560 0 785550 99.993 30588 596 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 20:34:52] CVMFS is ok
[2025-10-12 20:34:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:34:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:34:52] Further information can be found at the LHC@home message board.
[2025-10-12 20:34:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:34:52] Checking for apptainer binary...
[2025-10-12 20:34:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:34:52] Running /usr/bin/apptainer --version
[2025-10-12 20:34:52] apptainer version 1.4.1-1.1
[2025-10-12 20:34:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:34:52] atlasA237
[2025-10-12 20:34:52] apptainer works
[2025-10-12 20:34:52] Set ATHENA_PROC_NUMBER=4
[2025-10-12 20:34:52] Set ATHENA_CORE_NUMBER=4
[2025-10-12 20:34:52] Starting ATLAS job with PandaID=6839318357
[2025-10-12 20:34:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:47:17]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:47:17] 2025-10-12 19:46:45,458 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:47:17] 2025-10-12 19:46:45,458 | INFO     | job 6839318357 has completed (purged errors)
[2025-10-12 21:47:17] 2025-10-12 19:46:45,458 | INFO     | overall cleanup function is called
[2025-10-12 21:47:17] 2025-10-12 19:46:46,465 | INFO     | --- collectZombieJob: --- 10, [318011]
[2025-10-12 21:47:17] 2025-10-12 19:46:46,465 | INFO     | zombie collector waiting for pid 318011
[2025-10-12 21:47:17] 2025-10-12 19:46:46,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:47:17] 2025-10-12 19:46:46,466 | INFO     | collected zombie processes
[2025-10-12 21:47:17] 2025-10-12 19:46:46,466 | INFO     | will attempt to kill all subprocesses of pid=318011
[2025-10-12 21:47:17] 2025-10-12 19:46:46,513 | INFO     | process IDs to be killed: [318011] (in reverse order)
[2025-10-12 21:47:17] 2025-10-12 19:46:46,544 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:47:17] 2025-10-12 19:46:46,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:47:17] 2025-10-12 19:46:46,546 | INFO     | did not find any defunct processes belonging to 318011
[2025-10-12 21:47:17] 2025-10-12 19:46:46,547 | INFO     | did not find any defunct processes belonging to 318011
[2025-10-12 21:47:17] 2025-10-12 19:46:46,547 | INFO     | ready for new job
[2025-10-12 21:47:17] 2025-10-12 19:46:46,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:47:17] 2025-10-12 19:46:46,548 | INFO     | ***************************************
[2025-10-12 21:47:17] 2025-10-12 19:46:46,548 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:47:17] 2025-10-12 19:46:46,548 | INFO     | ***************************************
[2025-10-12 21:47:17] 2025-10-12 19:46:46,548 | INFO     | 
[2025-10-12 21:47:17] 2025-10-12 19:46:46,548 | INFO     | architecture information:
[2025-10-12 21:47:17] 2025-10-12 19:46:46,548 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:47:17] 2025-10-12 19:46:46,561 | INFO     | cat /etc/os-release:
[2025-10-12 21:47:17] NAME="CentOS Linux"
[2025-10-12 21:47:17] VERSION="7 (Core)"
[2025-10-12 21:47:17] ID="centos"
[2025-10-12 21:47:17] ID_LIKE="rhel fedora"
[2025-10-12 21:47:17] VERSION_ID="7"
[2025-10-12 21:47:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:47:17] ANSI_COLOR="0;31"
[2025-10-12 21:47:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:47:17] HOME_URL="https://www.centos.org/"
[2025-10-12 21:47:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:47:17] 
[2025-10-12 21:47:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:47:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:47:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:47:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:47:17] 
[2025-10-12 21:47:17] 2025-10-12 19:46:46,561 | INFO     | ***************************************
[2025-10-12 21:47:17] 2025-10-12 19:46:47,064 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 21:47:17] 2025-10-12 19:46:47,081 | INFO     | sufficient remaining disk space (326299025408 B)
[2025-10-12 21:47:17] 2025-10-12 19:46:47,081 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:47:17] 2025-10-12 19:46:47,081 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:47:17] 2025-10-12 19:46:47,081 | INFO     | update_server=False
[2025-10-12 21:47:17] 2025-10-12 19:46:47,081 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:47:17] 2025-10-12 19:46:47,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:47:17] 2025-10-12 19:46:47,098 | INFO     | all payload control threads have been joined
[2025-10-12 21:47:17] 2025-10-12 19:46:47,119 | INFO     | all job control threads have been joined
[2025-10-12 21:47:17] 2025-10-12 19:46:47,158 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:47:17] 2025-10-12 19:46:47,158 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:47:17] 2025-10-12 19:46:47,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:47:17] 2025-10-12 19:46:47,158 | INFO     | will abort loop
[2025-10-12 21:47:17] 2025-10-12 19:46:47,856 | INFO     | all data control threads have been joined
[2025-10-12 21:47:17] 2025-10-12 19:46:48,087 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,103 | INFO     | [payload] control thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,125 | INFO     | [job] control thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,128 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,164 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,264 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,321 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,567 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:48,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:47:17] 2025-10-12 19:46:48,862 | INFO     | [data] control thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:49,031 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:49,087 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:49,472 | INFO     | [job] validate thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:49,578 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:50,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:47:17] 2025-10-12 19:46:51,063 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:52,621 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:46:57,354 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:47:17] 2025-10-12 19:46:58,360 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:47:17] 2025-10-12 19:47:04,358 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:47:17] 2025-10-12 19:47:04,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286698280768)>', '<ExcThread(monitor, started 140285241718528)>']
[2025-10-12 21:47:17] 2025-10-12 19:47:10,016 | INFO     | all workflow threads have been joined
[2025-10-12 21:47:17] 2025-10-12 19:47:10,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:47:17] 2025-10-12 19:47:10,018 | INFO     | traces error code: 0
[2025-10-12 21:47:17] 2025-10-12 19:47:10,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:47:17] 2025-10-12 19:47:17,328 | INFO     | PID=311445 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:47:17] 2025-10-12 19:47:17,328 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:47:17] 2025-10-12 19:47:17,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:47:17] 2025-10-12 19:47:17,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:47:17] 2025-10-12 19:47:17,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:47:17] 2025-10-12 19:47:17,328 | INFO     | [monitor] control thread has ended
[2025-10-12 21:47:17] 2025-10-12 19:47:17,393 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:47:17] 2025-10-12 19:47:17,397 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:47:17] 2025-10-12 19:47:17,400 [wrapper] pilotpid: 311445
[2025-10-12 21:47:17] 2025-10-12 19:47:17,404 [wrapper] Pilot exit status: 0
[2025-10-12 21:47:17] 2025-10-12 19:47:17,414 [wrapper] pandaids: 6839318357
[2025-10-12 21:47:17] 2025-10-12 19:47:17,435 [wrapper] cleanup supervisor_pilot  327660 311446
[2025-10-12 21:47:17] 2025-10-12 19:47:17,439 [wrapper] Test setup, not cleaning
[2025-10-12 21:47:17] 2025-10-12 19:47:17,442 [wrapper] apfmon messages muted
[2025-10-12 21:47:17] 2025-10-12 19:47:17,446 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:47:17] 2025-10-12 19:47:17,449 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:47:17]  *** Error codes and diagnostics ***
[2025-10-12 21:47:17]     "exeErrorCode": 0,
[2025-10-12 21:47:17]     "exeErrorDiag": "",
[2025-10-12 21:47:17]     "pilotErrorCode": 0,
[2025-10-12 21:47:17]     "pilotErrorDiag": "",
[2025-10-12 21:47:17]  *** Listing of results directory ***
[2025-10-12 21:47:17] total 410588
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:00 queuedata.json
[2025-10-12 21:47:17] -rwx------ 1 boinc boinc     36292 Oct 12 05:00 runpilot2-wrapper.sh
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:47:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:34 run_atlas
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:34 job.xml
[2025-10-12 21:47:17] -rw-r--r-- 2 boinc boinc 223553107 Oct 12 20:34 EVNT.46676267._003202.pool.root.1
[2025-10-12 21:47:17] -rw-r--r-- 2 boinc boinc    569679 Oct 12 20:34 input.tar.gz
[2025-10-12 21:47:17] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:34 start_atlas.sh
[2025-10-12 21:47:17] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:34 shared
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:34 boinc_setup_complete
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc      6370 Oct 12 20:34 init_data.xml
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:34 boinc_lockfile
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc      2551 Oct 12 20:34 pandaJob.out
[2025-10-12 21:47:17] -rw------- 1 boinc boinc    975528 Oct 12 20:34 agis_schedconf.cvmfs.json
[2025-10-12 21:47:17] -rw------- 1 boinc boinc   1560580 Oct 12 20:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:47:17] drwx------ 5 boinc boinc      4096 Oct 12 20:35 pilot3
[2025-10-12 21:47:17] -rw------- 1 boinc boinc 191174338 Oct 12 21:46 HITS.46676269._069778.pool.root.1
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:46 boinc_task_state.xml
[2025-10-12 21:47:17] -rw------- 1 boinc boinc        95 Oct 12 21:46 pilot_heartbeat.json
[2025-10-12 21:47:17] -rw------- 1 boinc boinc      1022 Oct 12 21:46 memory_monitor_summary.json
[2025-10-12 21:47:17] -rw------- 1 boinc boinc    270371 Oct 12 21:46 log.46676269._069778.job.log.tgz.1
[2025-10-12 21:47:17] -rw------- 1 boinc boinc      7764 Oct 12 21:46 heartbeat.json
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:46 boinc_mmap_file
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:46 wrapper_checkpoint.txt
[2025-10-12 21:47:17] -rw------- 1 boinc boinc       746 Oct 12 21:47 pilotlog.txt
[2025-10-12 21:47:17] -rw------- 1 boinc boinc    638544 Oct 12 21:47 log.46676269._069778.job.log.1
[2025-10-12 21:47:17] -rw------- 1 boinc boinc       357 Oct 12 21:47 output.list
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:47 runtime_log
[2025-10-12 21:47:17] -rw------- 1 boinc boinc    931840 Oct 12 21:47 result.tar.gz
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc      8792 Oct 12 21:47 runtime_log.err
[2025-10-12 21:47:17] -rw------- 1 boinc boinc       661 Oct 12 21:47 izAODmEV1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiPiNDmhGX7Im.diag
[2025-10-12 21:47:17] -rw-r--r-- 1 boinc boinc     11218 Oct 12 21:47 stderr.txt
[2025-10-12 21:47:17] HITS file was successfully produced:
[2025-10-12 21:47:17] -rw------- 1 boinc boinc 191174338 Oct 12 21:46 shared/HITS.pool.root.1
[2025-10-12 21:47:17]  *** Contents of shared directory: ***
[2025-10-12 21:47:17] total 406508
[2025-10-12 21:47:17] -rw-r--r-- 2 boinc boinc 223553107 Oct 12 20:34 ATLAS.root_0
[2025-10-12 21:47:17] -rw-r--r-- 2 boinc boinc    569679 Oct 12 20:34 input.tar.gz
[2025-10-12 21:47:17] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:34 start_atlas.sh
[2025-10-12 21:47:17] -rw------- 1 boinc boinc 191174338 Oct 12 21:46 HITS.pool.root.1
[2025-10-12 21:47:17] -rw------- 1 boinc boinc    931840 Oct 12 21:47 result.tar.gz
21:47:18 (307658): run_atlas exited; CPU time 16186.271727
21:47:18 (307658): called boinc_finish(0)

</stderr_txt>
]]>

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