Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:27:06 (2707829): wrapper (7.7.26015): starting
00:27:06 (2707829): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 00:27:06] Arguments: --nthreads 3
[2025-10-13 00:27:06] Threads: 3
[2025-10-13 00:27:06] Checking for CVMFS
[2025-10-13 00:27:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:27:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:27:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:27:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:27:06] 2.9.2.0 1204004 4840 83352 151640 0 57 4350889 36864000 0 130560 0 3743883 99.991 167871 800 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 00:27:06] CVMFS is ok
[2025-10-13 00:27:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:27:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:27:06] Further information can be found at the LHC@home message board.
[2025-10-13 00:27:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:27:06] Checking for apptainer binary...
[2025-10-13 00:27:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:27:07] Running /usr/bin/apptainer --version
[2025-10-13 00:27:07] apptainer version 1.4.1-1.1
[2025-10-13 00:27:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:27:07] thA312
[2025-10-13 00:27:07] apptainer works
[2025-10-13 00:27:08] Set ATHENA_PROC_NUMBER=3
[2025-10-13 00:27:08] Set ATHENA_CORE_NUMBER=3
[2025-10-13 00:27:08] Starting ATLAS job with PandaID=6839242309
[2025-10-13 00:27:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:50:25]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,106 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,106 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:50:25] 2025-10-12 23:49:52,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,106 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:50:25] 2025-10-12 23:49:52,106 | INFO     | job 6839242309 has completed (purged errors)
[2025-10-13 01:50:25] 2025-10-12 23:49:52,106 | INFO     | overall cleanup function is called
[2025-10-13 01:50:25] 2025-10-12 23:49:53,112 | INFO     | --- collectZombieJob: --- 10, [2717988]
[2025-10-13 01:50:25] 2025-10-12 23:49:53,112 | INFO     | zombie collector waiting for pid 2717988
[2025-10-13 01:50:25] 2025-10-12 23:49:53,112 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:50:25] 2025-10-12 23:49:53,112 | INFO     | collected zombie processes
[2025-10-13 01:50:25] 2025-10-12 23:49:53,112 | INFO     | will attempt to kill all subprocesses of pid=2717988
[2025-10-13 01:50:25] 2025-10-12 23:49:53,162 | INFO     | process IDs to be killed: [2717988] (in reverse order)
[2025-10-13 01:50:25] 2025-10-12 23:49:53,189 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:50:25] 2025-10-12 23:49:53,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:50:25] 2025-10-12 23:49:53,190 | INFO     | did not find any defunct processes belonging to 2717988
[2025-10-13 01:50:25] 2025-10-12 23:49:53,192 | INFO     | did not find any defunct processes belonging to 2717988
[2025-10-13 01:50:25] 2025-10-12 23:49:53,192 | INFO     | ready for new job
[2025-10-13 01:50:25] 2025-10-12 23:49:53,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:50:25] 2025-10-12 23:49:53,193 | INFO     | ***************************************
[2025-10-13 01:50:25] 2025-10-12 23:49:53,193 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:50:25] 2025-10-12 23:49:53,193 | INFO     | ***************************************
[2025-10-13 01:50:25] 2025-10-12 23:49:53,193 | INFO     | 
[2025-10-13 01:50:25] 2025-10-12 23:49:53,193 | INFO     | architecture information:
[2025-10-13 01:50:25] 2025-10-12 23:49:53,193 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:50:25] 2025-10-12 23:49:53,202 | INFO     | cat /etc/os-release:
[2025-10-13 01:50:25] NAME="CentOS Linux"
[2025-10-13 01:50:25] VERSION="7 (Core)"
[2025-10-13 01:50:25] ID="centos"
[2025-10-13 01:50:25] ID_LIKE="rhel fedora"
[2025-10-13 01:50:25] VERSION_ID="7"
[2025-10-13 01:50:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:50:25] ANSI_COLOR="0;31"
[2025-10-13 01:50:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:50:25] HOME_URL="https://www.centos.org/"
[2025-10-13 01:50:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:50:25] 
[2025-10-13 01:50:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:50:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:50:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:50:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:50:25] 
[2025-10-13 01:50:25] 2025-10-12 23:49:53,202 | INFO     | ***************************************
[2025-10-13 01:50:25] 2025-10-12 23:49:53,705 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:50:25] 2025-10-12 23:49:53,719 | INFO     | sufficient remaining disk space (355452583936 B)
[2025-10-13 01:50:25] 2025-10-12 23:49:53,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:50:25] 2025-10-12 23:49:53,719 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:50:25] 2025-10-12 23:49:53,719 | INFO     | update_server=False
[2025-10-13 01:50:25] 2025-10-12 23:49:53,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:50:25] 2025-10-12 23:49:53,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:50:25] 2025-10-12 23:49:53,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:50:25] 2025-10-12 23:49:53,720 | INFO     | aborting loop
[2025-10-13 01:50:25] 2025-10-12 23:49:54,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:50:25] 2025-10-12 23:49:54,657 | INFO     | all data control threads have been joined
[2025-10-13 01:50:25] 2025-10-12 23:49:54,725 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:54,725 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:54,726 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:54,889 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:54,993 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:55,135 | INFO     | all payload control threads have been joined
[2025-10-13 01:50:25] 2025-10-12 23:49:55,390 | INFO     | all job control threads have been joined
[2025-10-13 01:50:25] 2025-10-12 23:49:55,413 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:55,520 | INFO     | [job] validate thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:55,642 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:55,645 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:55,662 | INFO     | [data] control thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:55,962 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:56,076 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:56,141 | INFO     | [payload] control thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:56,396 | INFO     | [job] control thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:49:56,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:50:25] 2025-10-12 23:50:00,604 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:50:03,810 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:50:25] 2025-10-12 23:50:04,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:50:25] 2025-10-12 23:50:19,413 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:50:25] 2025-10-12 23:50:20,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702979065664)>', '<ExcThread(monitor, started 140702482671360)>']
[2025-10-13 01:50:25] 2025-10-12 23:50:24,672 | INFO     | PID=2711547 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:50:25] 2025-10-12 23:50:24,672 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:50:25] 2025-10-12 23:50:24,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:50:25] 2025-10-12 23:50:24,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:50:25] 2025-10-12 23:50:24,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:50:25] 2025-10-12 23:50:24,673 | INFO     | [monitor] control thread has ended
[2025-10-13 01:50:25] 2025-10-12 23:50:25,054 | INFO     | all workflow threads have been joined
[2025-10-13 01:50:25] 2025-10-12 23:50:25,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:50:25] 2025-10-12 23:50:25,055 | INFO     | traces error code: 0
[2025-10-13 01:50:25] 2025-10-12 23:50:25,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:50:25] 2025-10-12 23:50:25,107 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:50:25] 2025-10-12 23:50:25,109 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:50:25] 2025-10-12 23:50:25,112 [wrapper] pilotpid: 2711547
[2025-10-13 01:50:25] 2025-10-12 23:50:25,114 [wrapper] Pilot exit status: 0
[2025-10-13 01:50:25] 2025-10-12 23:50:25,121 [wrapper] pandaids: 6839242309
[2025-10-13 01:50:25] 2025-10-12 23:50:25,137 [wrapper] cleanup supervisor_pilot 2730734 2711548
[2025-10-13 01:50:25] 2025-10-12 23:50:25,140 [wrapper] Test setup, not cleaning
[2025-10-13 01:50:25] 2025-10-12 23:50:25,142 [wrapper] apfmon messages muted
[2025-10-13 01:50:25] 2025-10-12 23:50:25,144 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:50:25] 2025-10-12 23:50:25,146 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:50:25]  *** Error codes and diagnostics ***
[2025-10-13 01:50:25]     "exeErrorCode": 0,
[2025-10-13 01:50:25]     "exeErrorDiag": "",
[2025-10-13 01:50:25]     "pilotErrorCode": 0,
[2025-10-13 01:50:25]     "pilotErrorDiag": "",
[2025-10-13 01:50:25]  *** Listing of results directory ***
[2025-10-13 01:50:25] total 408116
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:26 pilot3.tar.gz
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:50 queuedata.json
[2025-10-13 01:50:25] -rwx------ 1 boinc boinc     36292 Oct 12 03:51 runpilot2-wrapper.sh
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:50:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:27 run_atlas
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:27 job.xml
[2025-10-13 01:50:25] -rw-r--r-- 2 boinc boinc 219882704 Oct 13 00:27 EVNT.46676267._003167.pool.root.1
[2025-10-13 01:50:25] -rw-r--r-- 2 boinc boinc    569681 Oct 13 00:27 input.tar.gz
[2025-10-13 01:50:25] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:27 start_atlas.sh
[2025-10-13 01:50:25] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:27 shared
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:27 boinc_setup_complete
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc      6437 Oct 13 00:27 init_data.xml
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:27 boinc_lockfile
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc      2550 Oct 13 00:27 pandaJob.out
[2025-10-13 01:50:25] -rw------- 1 boinc boinc    975603 Oct 13 00:27 agis_schedconf.cvmfs.json
[2025-10-13 01:50:25] -rw------- 1 boinc boinc   1560580 Oct 13 00:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:50:25] drwx------ 5 boinc boinc      4096 Oct 13 00:27 pilot3
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc       529 Oct 13 01:49 boinc_task_state.xml
[2025-10-13 01:50:25] -rw------- 1 boinc boinc 192183326 Oct 13 01:49 HITS.46676269._068953.pool.root.1
[2025-10-13 01:50:25] -rw------- 1 boinc boinc        95 Oct 13 01:49 pilot_heartbeat.json
[2025-10-13 01:50:25] -rw------- 1 boinc boinc      1022 Oct 13 01:49 memory_monitor_summary.json
[2025-10-13 01:50:25] -rw------- 1 boinc boinc    244999 Oct 13 01:49 log.46676269._068953.job.log.tgz.1
[2025-10-13 01:50:25] -rw------- 1 boinc boinc      7769 Oct 13 01:49 heartbeat.json
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:50 wrapper_checkpoint.txt
[2025-10-13 01:50:25] -rw------- 1 boinc boinc      4824 Oct 13 01:50 pilotlog.txt
[2025-10-13 01:50:25] -rw------- 1 boinc boinc    727361 Oct 13 01:50 log.46676269._068953.job.log.1
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:50 boinc_mmap_file
[2025-10-13 01:50:25] -rw------- 1 boinc boinc       357 Oct 13 01:50 output.list
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:50 runtime_log
[2025-10-13 01:50:25] -rw------- 1 boinc boinc    993280 Oct 13 01:50 result.tar.gz
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc      8777 Oct 13 01:50 runtime_log.err
[2025-10-13 01:50:25] -rw------- 1 boinc boinc       658 Oct 13 01:50 CCTNDmQQ0R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWHiNDmt6ilXo.diag
[2025-10-13 01:50:25] -rw-r--r-- 1 boinc boinc     12831 Oct 13 01:50 stderr.txt
[2025-10-13 01:50:25] HITS file was successfully produced:
[2025-10-13 01:50:25] -rw------- 1 boinc boinc 192183326 Oct 13 01:49 shared/HITS.pool.root.1
[2025-10-13 01:50:25]  *** Contents of shared directory: ***
[2025-10-13 01:50:25] total 403968
[2025-10-13 01:50:25] -rw-r--r-- 2 boinc boinc 219882704 Oct 13 00:27 ATLAS.root_0
[2025-10-13 01:50:25] -rw-r--r-- 2 boinc boinc    569681 Oct 13 00:27 input.tar.gz
[2025-10-13 01:50:25] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:27 start_atlas.sh
[2025-10-13 01:50:25] -rw------- 1 boinc boinc 192183326 Oct 13 01:49 HITS.pool.root.1
[2025-10-13 01:50:25] -rw------- 1 boinc boinc    993280 Oct 13 01:50 result.tar.gz
01:50:46 (2707829): run_atlas exited; CPU time 14199.618552
01:50:46 (2707829): called boinc_finish(0)

</stderr_txt>
]]>

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