Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:23:38 (3459333): wrapper (7.7.26015): starting
18:23:38 (3459333): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 18:23:38] Arguments: --nthreads 4
[2025-10-12 18:23:38] Threads: 4
[2025-10-12 18:23:38] Checking for CVMFS
[2025-10-12 18:23:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:23:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:23:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:23:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:23:39] 2.9.2.0 1879706 4480 95996 151625 2 57 22137162 36864000 0 130560 0 3931200 99.992 153588 841 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 18:23:39] CVMFS is ok
[2025-10-12 18:23:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:23:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:23:39] Further information can be found at the LHC@home message board.
[2025-10-12 18:23:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:23:39] Checking for apptainer binary...
[2025-10-12 18:23:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:23:39] Running /usr/bin/apptainer --version
[2025-10-12 18:23:39] apptainer version 1.4.1-1.1
[2025-10-12 18:23:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:23:39] thA317
[2025-10-12 18:23:39] apptainer works
[2025-10-12 18:23:39] Set ATHENA_PROC_NUMBER=4
[2025-10-12 18:23:39] Set ATHENA_CORE_NUMBER=4
[2025-10-12 18:23:39] Starting ATLAS job with PandaID=6839316729
[2025-10-12 18:23:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:39:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:39:13] 2025-10-12 17:38:42,416 | INFO     | process IDs to be killed: [3469694] (in reverse order)
[2025-10-12 19:39:13] 2025-10-12 17:38:42,453 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:39:13] 2025-10-12 17:38:42,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:39:13] 2025-10-12 17:38:42,455 | INFO     | did not find any defunct processes belonging to 3469694
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | did not find any defunct processes belonging to 3469694
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | ready for new job
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | ***************************************
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | ***************************************
[2025-10-12 19:39:13] 2025-10-12 17:38:42,457 | INFO     | 
[2025-10-12 19:39:13] 2025-10-12 17:38:42,458 | INFO     | architecture information:
[2025-10-12 19:39:13] 2025-10-12 17:38:42,458 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:39:13] 2025-10-12 17:38:42,473 | INFO     | cat /etc/os-release:
[2025-10-12 19:39:13] NAME="CentOS Linux"
[2025-10-12 19:39:13] VERSION="7 (Core)"
[2025-10-12 19:39:13] ID="centos"
[2025-10-12 19:39:13] ID_LIKE="rhel fedora"
[2025-10-12 19:39:13] VERSION_ID="7"
[2025-10-12 19:39:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:39:13] ANSI_COLOR="0;31"
[2025-10-12 19:39:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:39:13] HOME_URL="https://www.centos.org/"
[2025-10-12 19:39:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:39:13] 
[2025-10-12 19:39:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:39:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:39:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:39:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:39:13] 
[2025-10-12 19:39:13] 2025-10-12 17:38:42,474 | INFO     | ***************************************
[2025-10-12 19:39:13] 2025-10-12 17:38:42,977 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:39:13] 2025-10-12 17:38:42,996 | INFO     | sufficient remaining disk space (237554892800 B)
[2025-10-12 19:39:13] 2025-10-12 17:38:42,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:39:13] 2025-10-12 17:38:42,996 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:39:13] 2025-10-12 17:38:42,996 | INFO     | update_server=False
[2025-10-12 19:39:13] 2025-10-12 17:38:42,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:39:13] 2025-10-12 17:38:42,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:39:13] 2025-10-12 17:38:42,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:39:13] 2025-10-12 17:38:42,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:39:13] 2025-10-12 17:38:42,997 | INFO     | aborting loop
[2025-10-12 19:39:13] 2025-10-12 17:38:43,068 | INFO     | all job control threads have been joined
[2025-10-12 19:39:13] 2025-10-12 17:38:43,330 | INFO     | all payload control threads have been joined
[2025-10-12 19:39:13] 2025-10-12 17:38:43,590 | INFO     | all data control threads have been joined
[2025-10-12 19:39:13] 2025-10-12 17:38:44,002 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,002 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,002 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,074 | INFO     | [job] control thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,159 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,335 | INFO     | [payload] control thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,527 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,596 | INFO     | [data] control thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,759 | INFO     | [job] validate thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,835 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:44,905 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:45,003 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:45,172 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:45,386 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:45,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:39:13] 2025-10-12 17:38:45,982 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 19:39:13] 2025-10-12 17:38:49,649 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:52,709 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:39:13] 2025-10-12 17:38:53,668 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:39:13] 2025-10-12 17:38:54,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:39:13] 2025-10-12 17:38:56,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140384817026880)>', '<ExcThread(monitor, started 140383816247040)>']
[2025-10-12 19:39:13] 2025-10-12 17:39:01,549 | INFO     | all workflow threads have been joined
[2025-10-12 19:39:13] 2025-10-12 17:39:01,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:39:13] 2025-10-12 17:39:01,550 | INFO     | traces error code: 0
[2025-10-12 19:39:13] 2025-10-12 17:39:01,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:39:13] 2025-10-12 17:39:13,544 | INFO     | PID=3463125 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:39:13] 2025-10-12 17:39:13,544 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:39:13] 2025-10-12 17:39:13,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:39:13] 2025-10-12 17:39:13,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:39:13] 2025-10-12 17:39:13,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:39:13] 2025-10-12 17:39:13,544 | INFO     | [monitor] control thread has ended
[2025-10-12 19:39:13] 2025-10-12 17:39:13,623 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:39:13] 2025-10-12 17:39:13,627 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:39:13] 2025-10-12 17:39:13,631 [wrapper] pilotpid: 3463125
[2025-10-12 19:39:13] 2025-10-12 17:39:13,635 [wrapper] Pilot exit status: 0
[2025-10-12 19:39:13] 2025-10-12 17:39:13,648 [wrapper] pandaids: 6839316729
[2025-10-12 19:39:13] 2025-10-12 17:39:13,671 [wrapper] cleanup supervisor_pilot 3484503 3463126
[2025-10-12 19:39:13] 2025-10-12 17:39:13,675 [wrapper] Test setup, not cleaning
[2025-10-12 19:39:13] 2025-10-12 17:39:13,679 [wrapper] apfmon messages muted
[2025-10-12 19:39:13] 2025-10-12 17:39:13,683 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:39:13] 2025-10-12 17:39:13,687 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:39:13]  *** Error codes and diagnostics ***
[2025-10-12 19:39:13]     "exeErrorCode": 0,
[2025-10-12 19:39:13]     "exeErrorDiag": "",
[2025-10-12 19:39:13]     "pilotErrorCode": 0,
[2025-10-12 19:39:13]     "pilotErrorDiag": "",
[2025-10-12 19:39:13]  *** Listing of results directory ***
[2025-10-12 19:39:13] total 415236
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:53 pilot3.tar.gz
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc      5112 Oct 12 04:35 queuedata.json
[2025-10-12 19:39:13] -rwx------ 1 boinc boinc     36292 Oct 12 04:35 runpilot2-wrapper.sh
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:39:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:23 run_atlas
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:23 job.xml
[2025-10-12 19:39:13] -rw-r--r-- 2 boinc boinc 221879134 Oct 12 18:23 EVNT.46676267._003184.pool.root.1
[2025-10-12 19:39:13] -rw-r--r-- 2 boinc boinc    569684 Oct 12 18:23 input.tar.gz
[2025-10-12 19:39:13] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:23 start_atlas.sh
[2025-10-12 19:39:13] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:23 shared
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:23 boinc_setup_complete
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc      6377 Oct 12 18:23 init_data.xml
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:23 boinc_lockfile
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc      2549 Oct 12 18:23 pandaJob.out
[2025-10-12 19:39:13] -rw------- 1 boinc boinc    975528 Oct 12 18:23 agis_schedconf.cvmfs.json
[2025-10-12 19:39:13] -rw------- 1 boinc boinc   1560580 Oct 12 18:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:39:13] drwx------ 5 boinc boinc      4096 Oct 12 18:23 pilot3
[2025-10-12 19:39:13] -rw------- 1 boinc boinc 197564895 Oct 12 19:38 HITS.46676269._069399.pool.root.1
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc       530 Oct 12 19:38 boinc_task_state.xml
[2025-10-12 19:39:13] -rw------- 1 boinc boinc      1022 Oct 12 19:38 memory_monitor_summary.json
[2025-10-12 19:39:13] -rw------- 1 boinc boinc    267710 Oct 12 19:38 log.46676269._069399.job.log.tgz.1
[2025-10-12 19:39:13] -rw------- 1 boinc boinc      7760 Oct 12 19:38 heartbeat.json
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:38 boinc_mmap_file
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:38 wrapper_checkpoint.txt
[2025-10-12 19:39:13] -rw------- 1 boinc boinc       747 Oct 12 19:39 pilotlog.txt
[2025-10-12 19:39:13] -rw------- 1 boinc boinc        95 Oct 12 19:39 pilot_heartbeat.json
[2025-10-12 19:39:13] -rw------- 1 boinc boinc    663763 Oct 12 19:39 log.46676269._069399.job.log.1
[2025-10-12 19:39:13] -rw------- 1 boinc boinc       357 Oct 12 19:39 output.list
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:39 runtime_log
[2025-10-12 19:39:13] -rw------- 1 boinc boinc    952320 Oct 12 19:39 result.tar.gz
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc      8777 Oct 12 19:39 runtime_log.err
[2025-10-12 19:39:13] -rw------- 1 boinc boinc       658 Oct 12 19:39 jP4MDmN70R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm50SMDmmr2lbn.diag
[2025-10-12 19:39:13] -rw-r--r-- 1 boinc boinc     10277 Oct 12 19:39 stderr.txt
[2025-10-12 19:39:13] HITS file was successfully produced:
[2025-10-12 19:39:13] -rw------- 1 boinc boinc 197564895 Oct 12 19:38 shared/HITS.pool.root.1
[2025-10-12 19:39:13]  *** Contents of shared directory: ***
[2025-10-12 19:39:13] total 411132
[2025-10-12 19:39:13] -rw-r--r-- 2 boinc boinc 221879134 Oct 12 18:23 ATLAS.root_0
[2025-10-12 19:39:13] -rw-r--r-- 2 boinc boinc    569684 Oct 12 18:23 input.tar.gz
[2025-10-12 19:39:13] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:23 start_atlas.sh
[2025-10-12 19:39:13] -rw------- 1 boinc boinc 197564895 Oct 12 19:38 HITS.pool.root.1
[2025-10-12 19:39:13] -rw------- 1 boinc boinc    952320 Oct 12 19:39 result.tar.gz
19:39:35 (3459333): run_atlas exited; CPU time 16976.303392
19:39:35 (3459333): called boinc_finish(0)

</stderr_txt>
]]>

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