Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:25:20 (3492096): wrapper (7.7.26015): starting
18:25:20 (3492096): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 18:25:20] Arguments: --nthreads 6
[2025-10-12 18:25:20] Threads: 6
[2025-10-12 18:25:20] Checking for CVMFS
[2025-10-12 18:25:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:25:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:25:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:25:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:25:20] 2.11.5.0 3651556 4116 74348 151615 1 57 38675416 52428800 1858 130560 0 12741926 99.998 139387 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 18:25:20] CVMFS is ok
[2025-10-12 18:25:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:25:20] Checking for apptainer binary...
[2025-10-12 18:25:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:25:20] Running /usr/bin/apptainer --version
[2025-10-12 18:25:20] apptainer version 1.3.5-1.el9
[2025-10-12 18:25:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:25:20] testio008
[2025-10-12 18:25:20] apptainer works
[2025-10-12 18:25:20] Set ATHENA_PROC_NUMBER=6
[2025-10-12 18:25:20] Set ATHENA_CORE_NUMBER=6
[2025-10-12 18:25:20] Starting ATLAS job with PandaID=6839163265
[2025-10-12 18:25:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:31:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:31:45]  status_code=0
[2025-10-12 19:31:45]  storage_token=
[2025-10-12 19:31:45]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6839163265/log.46676269._067429.job.log.tgz.1
[2025-10-12 19:31:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/2d/log.46676269._067429.job.log.tgz.1
[2025-10-12 19:31:45]  workdir=None
[2025-10-12 19:31:45] ]
[2025-10-12 19:31:45] 2025-10-12 10:31:05,767 | INFO     | transferring file log.46676269._067429.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6839163265/log.46676269._067429.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 19:31:45] 2025-10-12 10:31:05,767 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6839163265/log.46676269._067429.job.log.tgz.1 /var/lib/boinc/slots/3/log.46676269._067429.job
[2025-10-12 19:31:45] 2025-10-12 10:31:05,775 | INFO     | adding to output.list: log.46676269._067429.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/2d/log.46676269._067429.job.log.tg
[2025-10-12 19:31:45] 2025-10-12 10:31:05,775 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:31:45] 2025-10-12 10:31:05,775 | INFO     | summary of transferred files:
[2025-10-12 19:31:45] 2025-10-12 10:31:05,775 | INFO     |  -- lfn=log.46676269._067429.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:31:45] 2025-10-12 10:31:05,775 | INFO     | stage-out finished correctly
[2025-10-12 19:31:45] 2025-10-12 10:31:05,818 | INFO     | time since job start (3933s) is within the limit (172800.0s)
[2025-10-12 19:31:45] 2025-10-12 10:31:06,839 | INFO     | monitor loop #301: job 0:6839163265 is in state 'finished'
[2025-10-12 19:31:45] 2025-10-12 10:31:06,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:31:45] 2025-10-12 10:31:07,824 | INFO     | time since job start (3935s) is within the limit (172800.0s)
[2025-10-12 19:31:45] 2025-10-12 10:31:07,864 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:31:45] 2025-10-12 10:31:09,342 | INFO     | monitor loop #302: job 0:6839163265 is in state 'finished'
[2025-10-12 19:31:45] 2025-10-12 10:31:09,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:31:45] 2025-10-12 10:31:09,829 | INFO     | time since job start (3937s) is within the limit (172800.0s)
[2025-10-12 19:31:45] 2025-10-12 10:31:10,347 | INFO     | job 6839163265 has state=finished
[2025-10-12 19:31:45] 2025-10-12 10:31:10,347 | INFO     | preparing for final server update for job 6839163265 in state='finished'
[2025-10-12 19:31:45] 2025-10-12 10:31:10,347 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:31:45] 2025-10-12 10:31:10,347 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:31:45] 2025-10-12 10:31:10,347 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:31:45] 2025-10-12 10:31:10,348 | INFO     | job 6839163265 has finished - writing final server update
[2025-10-12 19:31:45] 2025-10-12 10:31:10,348 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:31:45] 2025-10-12 10:31:10,348 | INFO     | executing command: lscpu
[2025-10-12 19:31:45] 2025-10-12 10:31:10,366 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:31:45] 2025-10-12 10:31:11,834 | INFO     | time since job start (3939s) is within the limit (172800.0s)
[2025-10-12 19:31:45] 2025-10-12 10:31:11,845 | INFO     | monitor loop #303: job 0:6839163265 is in state 'finished'
[2025-10-12 19:31:45] 2025-10-12 10:31:11,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,322 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:31:45] 2025-10-12 10:31:12,323 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3988.0507500000012
[2025-10-12 19:31:45] 2025-10-12 10:31:12,325 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839163265/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,325 | INFO     | extracted standard info from prmon json
[2025-10-12 19:31:45] 2025-10-12 10:31:12,326 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:31:45] 2025-10-12 10:31:12,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:31:45] 2025-10-12 10:31:12,326 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:31:45] 2025-10-12 10:31:12,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | sum of deviations: -5679180550.5
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | mean x: 1760263194.5
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | mean y: 2570723.5
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | -- intersect: 165286260471.45712
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | intersect: 165286260471.45712
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | chi2: 0.018103736469293315
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | -- intersect: 165286260471.45712
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | current memory leak: -93.90 B/s (using 58 data points, chi2=0.02)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | could have reported an average CPU frequency of 3716 MHz (6 samples)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | ..............................
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | . Timing measurements:
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | . get job = 0 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | . initial setup = 6 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,327 | INFO     | . payload setup = 3 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,328 | INFO     | . stage-in = 0 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,328 | INFO     | . payload execution = 3913 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,328 | INFO     | . stage-out = 0 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,328 | INFO     | . log creation = 0 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,328 | INFO     | ..............................
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | 
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | job summary report
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | --------------------------------------------------
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | PanDA job id: 6839163265
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | task id: 46676269
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | errors: (none)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | pilot state: finished 
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | transexitcode: 0
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | exeerrorcode: 0
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | exeerrordiag: 
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | exitcode: 0
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | exitmsg: OK
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | cpuconsumptiontime: 20990 s
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | nevents: 400
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | neventsw: 0
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | pid: 3502626
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | pgrp: 3502626
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | corecount: 6
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | event service: False
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 3920: 2375047, 3921: 2384045, 3923: 2384101, 3927: 2384423}
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | --------------------------------------------------
[2025-10-12 19:31:45] 2025-10-12 10:31:12,372 | INFO     | 
[2025-10-12 19:31:45] 2025-10-12 10:31:12,373 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-12 19:31:45] 2025-10-12 10:31:12,380 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | job 6839163265 has completed (purged errors)
[2025-10-12 19:31:45] 2025-10-12 10:31:12,381 | INFO     | overall cleanup function is called
[2025-10-12 19:31:45] 2025-10-12 10:31:13,386 | INFO     | --- collectZombieJob: --- 10, [3502626]
[2025-10-12 19:31:45] 2025-10-12 10:31:13,387 | INFO     | zombie collector waiting for pid 3502626
[2025-10-12 19:31:45] 2025-10-12 10:31:13,387 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:31:45] 2025-10-12 10:31:13,387 | INFO     | collected zombie processes
[2025-10-12 19:31:45] 2025-10-12 10:31:13,387 | INFO     | will attempt to kill all subprocesses of pid=3502626
[2025-10-12 19:31:45] 2025-10-12 10:31:13,423 | INFO     | process IDs to be killed: [3502626] (in reverse order)
[2025-10-12 19:31:45] 2025-10-12 10:31:13,442 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:31:45] 2025-10-12 10:31:13,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:31:45] 2025-10-12 10:31:13,444 | INFO     | did not find any defunct processes belonging to 3502626
[2025-10-12 19:31:45] 2025-10-12 10:31:13,446 | INFO     | did not find any defunct processes belonging to 3502626
[2025-10-12 19:31:45] 2025-10-12 10:31:13,446 | INFO     | ready for new job
[2025-10-12 19:31:45] 2025-10-12 10:31:13,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:31:45] 2025-10-12 10:31:13,447 | INFO     | ***************************************
[2025-10-12 19:31:45] 2025-10-12 10:31:13,447 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:31:45] 2025-10-12 10:31:13,447 | INFO     | ***************************************
[2025-10-12 19:31:45] 2025-10-12 10:31:13,447 | INFO     | 
[2025-10-12 19:31:45] 2025-10-12 10:31:13,448 | INFO     | architecture information:
[2025-10-12 19:31:45] 2025-10-12 10:31:13,448 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:31:45] 2025-10-12 10:31:13,454 | INFO     | cat /etc/os-release:
[2025-10-12 19:31:45] NAME="CentOS Linux"
[2025-10-12 19:31:45] VERSION="7 (Core)"
[2025-10-12 19:31:45] ID="centos"
[2025-10-12 19:31:45] ID_LIKE="rhel fedora"
[2025-10-12 19:31:45] VERSION_ID="7"
[2025-10-12 19:31:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:31:45] ANSI_COLOR="0;31"
[2025-10-12 19:31:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:31:45] HOME_URL="https://www.centos.org/"
[2025-10-12 19:31:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:31:45] 
[2025-10-12 19:31:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:31:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:31:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:31:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:31:45] 
[2025-10-12 19:31:45] 2025-10-12 10:31:13,454 | INFO     | ***************************************
[2025-10-12 19:31:45] 2025-10-12 10:31:13,956 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-12 19:31:45] 2025-10-12 10:31:13,963 | INFO     | sufficient remaining disk space (280434311168 B)
[2025-10-12 19:31:45] 2025-10-12 10:31:13,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:31:45] 2025-10-12 10:31:13,963 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:31:45] 2025-10-12 10:31:13,963 | INFO     | update_server=False
[2025-10-12 19:31:45] 2025-10-12 10:31:13,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:31:45] 2025-10-12 10:31:13,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:31:45] 2025-10-12 10:31:13,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:31:45] 2025-10-12 10:31:13,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:31:45] 2025-10-12 10:31:14,202 | INFO     | all data control threads have been joined
[2025-10-12 19:31:45] 2025-10-12 10:31:14,347 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:31:45] 2025-10-12 10:31:14,348 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:31:45] 2025-10-12 10:31:14,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:31:45] 2025-10-12 10:31:14,348 | INFO     | will abort loop
[2025-10-12 19:31:45] 2025-10-12 10:31:14,958 | INFO     | all payload control threads have been joined
[2025-10-12 19:31:45] 2025-10-12 10:31:14,968 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:14,968 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,142 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,207 | INFO     | [data] control thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,352 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,458 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,517 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,662 | INFO     | all job control threads have been joined
[2025-10-12 19:31:45] 2025-10-12 10:31:15,936 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,951 | INFO     | [job] validate thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,963 | INFO     | [payload] control thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:15,969 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:16,042 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:16,358 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:16,668 | INFO     | [job] control thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:17,969 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:24,161 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:31:45] 2025-10-12 10:31:25,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:31:45] 2025-10-12 10:31:38,006 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:31:45] 2025-10-12 10:31:39,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768828360512)>', '<ExcThread(monitor, started 139768318891776)>']
[2025-10-12 19:31:45] 2025-10-12 10:31:44,125 | INFO     | all workflow threads have been joined
[2025-10-12 19:31:45] 2025-10-12 10:31:44,125 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:31:45] 2025-10-12 10:31:44,126 | INFO     | traces error code: 0
[2025-10-12 19:31:45] 2025-10-12 10:31:44,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:31:45] 2025-10-12 10:31:44,924 | INFO     | PID=3495883 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:31:45] 2025-10-12 10:31:44,928 | INFO     | .. there are 3 such processes running
[2025-10-12 19:31:45] 2025-10-12 10:31:44,928 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:31:45] 2025-10-12 10:31:44,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:31:45] 2025-10-12 10:31:44,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:31:45] 2025-10-12 10:31:44,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:31:45] 2025-10-12 10:31:44,928 | INFO     | [monitor] control thread has ended
[2025-10-12 19:31:45] 2025-10-12 10:31:44,985 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:31:45] 2025-10-12 10:31:44,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:31:45] 2025-10-12 10:31:44,987 [wrapper] pilotpid: 3495883
[2025-10-12 19:31:45] 2025-10-12 10:31:44,988 [wrapper] Pilot exit status: 0
[2025-10-12 19:31:45] 2025-10-12 10:31:44,992 [wrapper] pandaids: 6839163265
[2025-10-12 19:31:45] 2025-10-12 10:31:45,003 [wrapper] cleanup supervisor_pilot 3560444 3495884
[2025-10-12 19:31:45] 2025-10-12 10:31:45,004 [wrapper] Test setup, not cleaning
[2025-10-12 19:31:45] 2025-10-12 10:31:45,005 [wrapper] apfmon messages muted
[2025-10-12 19:31:45] 2025-10-12 10:31:45,006 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:31:45] 2025-10-12 10:31:45,007 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:31:45]  *** Error codes and diagnostics ***
[2025-10-12 19:31:45]     "exeErrorCode": 0,
[2025-10-12 19:31:45]     "exeErrorDiag": "",
[2025-10-12 19:31:45]     "pilotErrorCode": 0,
[2025-10-12 19:31:45]     "pilotErrorDiag": "",
[2025-10-12 19:31:45]  *** Listing of results directory ***
[2025-10-12 19:31:45] total 404884
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc      5112 Oct 12 09:13 queuedata.json
[2025-10-12 19:31:45] -rwx------. 1 boinc boinc     36292 Oct 12 09:14 runpilot2-wrapper.sh
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc       100 Oct 12 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:31:45] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 18:25 run_atlas
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc       105 Oct 12 18:25 job.xml
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc      9509 Oct 12 18:25 init_data.xml
[2025-10-12 19:31:45] -rw-r--r--. 2 boinc boinc 219801294 Oct 12 18:25 EVNT.46676267._002750.pool.root.1
[2025-10-12 19:31:45] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:25 start_atlas.sh
[2025-10-12 19:31:45] drwxrwx--x. 2 boinc boinc        68 Oct 12 18:25 shared
[2025-10-12 19:31:45] -rw-r--r--. 2 boinc boinc    569677 Oct 12 18:25 input.tar.gz
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc         0 Oct 12 18:25 boinc_lockfile
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc      2550 Oct 12 18:25 pandaJob.out
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc    975536 Oct 12 18:25 agis_schedconf.cvmfs.json
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc   1560580 Oct 12 18:25 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:31:45] drwx------. 5 boinc boinc      4096 Oct 12 18:25 pilot3
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc 189151088 Oct 12 19:30 HITS.46676269._067429.pool.root.1
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc        95 Oct 12 19:30 pilot_heartbeat.json
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc      1020 Oct 12 19:31 memory_monitor_summary.json
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc       529 Oct 12 19:31 boinc_task_state.xml
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc    278320 Oct 12 19:31 log.46676269._067429.job.log.tgz.1
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc      7766 Oct 12 19:31 heartbeat.json
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc      8192 Oct 12 19:31 boinc_mmap_file
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc        27 Oct 12 19:31 wrapper_checkpoint.txt
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc       822 Oct 12 19:31 pilotlog.txt
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc    600520 Oct 12 19:31 log.46676269._067429.job.log.1
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc       357 Oct 12 19:31 output.list
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc       620 Oct 12 19:31 runtime_log
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc    901120 Oct 12 19:31 result.tar.gz
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc       642 Oct 12 19:31 YqmMDmFuyR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7pSMDmeOOKcn.diag
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc      8661 Oct 12 19:31 runtime_log.err
[2025-10-12 19:31:45] -rw-r--r--. 1 boinc boinc     21731 Oct 12 19:31 stderr.txt
[2025-10-12 19:31:45] HITS file was successfully produced:
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc 189151088 Oct 12 19:30 shared/HITS.pool.root.1
[2025-10-12 19:31:45]  *** Contents of shared directory: ***
[2025-10-12 19:31:45] total 400828
[2025-10-12 19:31:45] -rw-r--r--. 2 boinc boinc 219801294 Oct 12 18:25 ATLAS.root_0
[2025-10-12 19:31:45] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:25 start_atlas.sh
[2025-10-12 19:31:45] -rw-r--r--. 2 boinc boinc    569677 Oct 12 18:25 input.tar.gz
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc 189151088 Oct 12 19:30 HITS.pool.root.1
[2025-10-12 19:31:45] -rw-------. 1 boinc boinc    901120 Oct 12 19:31 result.tar.gz
19:31:46 (3492096): run_atlas exited; CPU time 21014.170144
19:31:46 (3492096): called boinc_finish(0)

</stderr_txt>
]]>

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