Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:01:48 (1657226): wrapper (7.7.26015): starting
08:01:48 (1657226): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:01:48] Arguments: --nthreads 12
[2025-10-12 08:01:48] Threads: 12
[2025-10-12 08:01:48] Checking for CVMFS
[2025-10-12 08:01:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:01:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:01:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:01:49] 2.11.0.0 3299214 2795 83316 151612 3 188 5322388 6144001 13032 130560 0 54857555 100.000 98121 196 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 08:01:49] CVMFS is ok
[2025-10-12 08:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:01:49] Checking for apptainer binary...
[2025-10-12 08:01:49] apptainer is not installed, using version from CVMFS
[2025-10-12 08:01:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:01:49] radiat0r
[2025-10-12 08:01:49] apptainer works
[2025-10-12 08:01:49] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:01:49] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:01:49] Starting ATLAS job with PandaID=6838990099
[2025-10-12 08:01:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:55:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:55:27]  scope=mc23_13p6TeV
[2025-10-12 08:55:27]  status=None
[2025-10-12 08:55:27]  status_code=0
[2025-10-12 08:55:27]  storage_token=
[2025-10-12 08:55:27]  surl=/var/lib/boinc/slots/4/PanDA_Pilot-6838990099/log.46676269._065820.job.log.tgz.1
[2025-10-12 08:55:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/6c/log.46676269._065820.job.log.tgz.1
[2025-10-12 08:55:27]  workdir=None
[2025-10-12 08:55:27] ]
[2025-10-12 08:55:27] 2025-10-12 08:54:46,576 | INFO     | transferring file log.46676269._065820.job.log.tgz.1 from /var/lib/boinc/slots/4/PanDA_Pilot-6838990099/log.46676269._065820.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 08:55:27] 2025-10-12 08:54:46,576 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/4/PanDA_Pilot-6838990099/log.46676269._065820.job.log.tgz.1 /var/lib/boinc/slots/4/log.46676269._065820.job
[2025-10-12 08:55:27] 2025-10-12 08:54:46,603 | INFO     | adding to output.list: log.46676269._065820.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/6c/log.46676269._065820.job.log.tg
[2025-10-12 08:55:27] 2025-10-12 08:54:46,604 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 08:55:27] 2025-10-12 08:54:46,604 | INFO     | summary of transferred files:
[2025-10-12 08:55:27] 2025-10-12 08:54:46,604 | INFO     |  -- lfn=log.46676269._065820.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 08:55:27] 2025-10-12 08:54:46,605 | INFO     | stage-out finished correctly
[2025-10-12 08:55:27] 2025-10-12 08:54:47,001 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 08:55:27] 2025-10-12 08:54:47,096 | INFO     | job 6838990099 has state=finished
[2025-10-12 08:55:27] 2025-10-12 08:54:47,097 | INFO     | preparing for final server update for job 6838990099 in state='finished'
[2025-10-12 08:55:27] 2025-10-12 08:54:47,097 | INFO     | this job has now completed (state=finished)
[2025-10-12 08:55:27] 2025-10-12 08:54:47,097 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 08:55:27] 2025-10-12 08:54:47,097 | INFO     | log transfer has been attempted: DONE
[2025-10-12 08:55:27] 2025-10-12 08:54:47,097 | INFO     | job 6838990099 has finished - writing final server update
[2025-10-12 08:55:27] 2025-10-12 08:54:47,098 | INFO     | total number of processed events: 400 (read)
[2025-10-12 08:55:27] 2025-10-12 08:54:47,099 | INFO     | executing command: lscpu
[2025-10-12 08:55:27] 2025-10-12 08:54:47,291 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 08:55:27] 2025-10-12 08:54:48,184 | INFO     | time since job start (3165s) is within the limit (172800.0s)
[2025-10-12 08:55:27] 2025-10-12 08:54:49,200 | WARNING  | process 1698111 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 08:55:27] 2025-10-12 08:54:49,200 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6838990099/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:55:27] 2025-10-12 08:54:49,756 | INFO     | number of running child processes to parent process 1698111: 1
[2025-10-12 08:55:27] 2025-10-12 08:54:49,756 | INFO     | maximum number of monitored processes: 6
[2025-10-12 08:55:27] 2025-10-12 08:54:50,190 | INFO     | time since job start (3167s) is within the limit (172800.0s)
[2025-10-12 08:55:27] 2025-10-12 08:54:52,196 | INFO     | time since job start (3169s) is within the limit (172800.0s)
[2025-10-12 08:55:27] 2025-10-12 08:54:52,258 | INFO     | monitor loop #221: job 0:6838990099 is in state 'finished'
[2025-10-12 08:55:27] 2025-10-12 08:54:52,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:55:27] 2025-10-12 08:54:52,973 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 08:55:27] 2025-10-12 08:54:53,035 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2305.1890039062496
[2025-10-12 08:55:27] 2025-10-12 08:54:53,106 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6838990099/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:55:27] 2025-10-12 08:54:53,107 | INFO     | extracted standard info from prmon json
[2025-10-12 08:55:27] 2025-10-12 08:54:53,107 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 08:55:27] 2025-10-12 08:54:53,107 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 08:55:27] 2025-10-12 08:54:53,108 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 08:55:27] 2025-10-12 08:54:53,108 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 08:55:27] 2025-10-12 08:54:53,109 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:55:27] 2025-10-12 08:54:53,109 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | sum of deviations: 1220739076.0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | mean x: 1760257803.0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | mean y: 2653104.466666667
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | -- intersect: -76082107567.55898
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | intersect: -76082107567.55898
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | chi2: 0.033676834839694594
[2025-10-12 08:55:27] 2025-10-12 08:54:53,110 | INFO     | -- intersect: -76082107567.55898
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | current memory leak: 43.22 B/s (using 45 data points, chi2=0.03)
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | could have reported an average CPU frequency of 2337 MHz (5 samples)
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | ..............................
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | . Timing measurements:
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | . get job = 0 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | . initial setup = 1 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | . payload setup = 7 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,111 | INFO     | . stage-in = 0 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,112 | INFO     | . payload execution = 3132 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,112 | INFO     | . stage-out = 0 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,112 | INFO     | . log creation = 0 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,112 | INFO     | ..............................
[2025-10-12 08:55:27] 2025-10-12 08:54:53,211 | INFO     | 
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | job summary report
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | --------------------------------------------------
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | PanDA job id: 6838990099
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | task id: 46676269
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | errors: (none)
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:55:27] 2025-10-12 08:54:53,212 | INFO     | pilot state: finished 
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | transexitcode: 0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | exeerrorcode: 0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | exeerrordiag: 
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | exitcode: 0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | exitmsg: OK
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | cpuconsumptiontime: 33322 s
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | nevents: 400
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | neventsw: 0
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | pid: 1698111
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | pgrp: 1698111
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | corecount: 12
[2025-10-12 08:55:27] 2025-10-12 08:54:53,213 | INFO     | event service: False
[2025-10-12 08:55:27] 2025-10-12 08:54:53,214 | INFO     | sizes: {0: 2348686, 1: 2348885, 8: 2349147, 12: 2349175, 3144: 2374917, 3145: 2384099, 3152: 2384269}
[2025-10-12 08:55:27] 2025-10-12 08:54:53,214 | INFO     | --------------------------------------------------
[2025-10-12 08:55:27] 2025-10-12 08:54:53,214 | INFO     | 
[2025-10-12 08:55:27] 2025-10-12 08:54:53,214 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-12 08:55:27] 2025-10-12 08:54:53,242 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,242 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,242 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,242 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,242 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,243 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,244 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:55:27] 2025-10-12 08:54:53,244 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,244 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:55:27] 2025-10-12 08:54:53,244 | INFO     | job 6838990099 has completed (purged errors)
[2025-10-12 08:55:27] 2025-10-12 08:54:53,244 | INFO     | overall cleanup function is called
[2025-10-12 08:55:27] 2025-10-12 08:54:54,238 | INFO     | PID=1675278 has CPU usage=22.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 08:55:27] 2025-10-12 08:54:54,240 | INFO     | .. there are 17 such processes running
[2025-10-12 08:55:27] 2025-10-12 08:54:54,254 | INFO     | --- collectZombieJob: --- 10, [1698111]
[2025-10-12 08:55:27] 2025-10-12 08:54:54,255 | INFO     | zombie collector waiting for pid 1698111
[2025-10-12 08:55:27] 2025-10-12 08:54:54,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:55:27] 2025-10-12 08:54:54,255 | INFO     | collected zombie processes
[2025-10-12 08:55:27] 2025-10-12 08:54:54,255 | INFO     | will attempt to kill all subprocesses of pid=1698111
[2025-10-12 08:55:27] 2025-10-12 08:54:54,926 | INFO     | process IDs to be killed: [1698111] (in reverse order)
[2025-10-12 08:55:27] 2025-10-12 08:54:55,147 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:55:27] 2025-10-12 08:54:55,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:55:27] 2025-10-12 08:54:55,175 | INFO     | did not find any defunct processes belonging to 1698111
[2025-10-12 08:55:27] 2025-10-12 08:54:55,195 | INFO     | did not find any defunct processes belonging to 1698111
[2025-10-12 08:55:27] 2025-10-12 08:54:55,195 | INFO     | ready for new job
[2025-10-12 08:55:27] 2025-10-12 08:54:55,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:55:27] 2025-10-12 08:54:55,197 | INFO     | ***************************************
[2025-10-12 08:55:27] 2025-10-12 08:54:55,197 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:55:27] 2025-10-12 08:54:55,197 | INFO     | ***************************************
[2025-10-12 08:55:27] 2025-10-12 08:54:55,197 | INFO     | 
[2025-10-12 08:55:27] 2025-10-12 08:54:55,231 | INFO     | architecture information:
[2025-10-12 08:55:27] 2025-10-12 08:54:55,232 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:55:27] 2025-10-12 08:54:55,249 | INFO     | cat /etc/os-release:
[2025-10-12 08:55:27] NAME="CentOS Linux"
[2025-10-12 08:55:27] VERSION="7 (Core)"
[2025-10-12 08:55:27] ID="centos"
[2025-10-12 08:55:27] ID_LIKE="rhel fedora"
[2025-10-12 08:55:27] VERSION_ID="7"
[2025-10-12 08:55:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:55:27] ANSI_COLOR="0;31"
[2025-10-12 08:55:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:55:27] HOME_URL="https://www.centos.org/"
[2025-10-12 08:55:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:55:27] 
[2025-10-12 08:55:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:55:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:55:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:55:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:55:27] 
[2025-10-12 08:55:27] 2025-10-12 08:54:55,249 | INFO     | ***************************************
[2025-10-12 08:55:27] 2025-10-12 08:54:55,751 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-12 08:55:27] 2025-10-12 08:54:55,777 | INFO     | sufficient remaining disk space (1725422370816 B)
[2025-10-12 08:55:27] 2025-10-12 08:54:55,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:55:27] 2025-10-12 08:54:55,777 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:55:27] 2025-10-12 08:54:55,777 | INFO     | update_server=False
[2025-10-12 08:55:27] 2025-10-12 08:54:55,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:55:27] 2025-10-12 08:54:55,778 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:55:27] 2025-10-12 08:54:55,778 | INFO     | aborting loop
[2025-10-12 08:55:27] 2025-10-12 08:54:55,947 | INFO     | all job control threads have been joined
[2025-10-12 08:55:27] 2025-10-12 08:54:56,432 | INFO     | all payload control threads have been joined
[2025-10-12 08:55:27] 2025-10-12 08:54:56,783 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:56,783 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:56,786 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:56,803 | INFO     | [job] validate thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:56,817 | INFO     | all data control threads have been joined
[2025-10-12 08:55:27] 2025-10-12 08:54:56,903 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:56,953 | INFO     | [job] control thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:57,187 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:57,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:55:27] 2025-10-12 08:54:57,300 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:57,311 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:57,438 | INFO     | [payload] control thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:57,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:55:27] 2025-10-12 08:54:57,823 | INFO     | [data] control thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:57,964 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:58,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:58,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:55:27] 2025-10-12 08:54:59,223 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:54:59,228 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:55:01,612 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:55:27] 2025-10-12 08:55:07,949 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:55:27] 2025-10-12 08:55:08,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140386105677632)>', '<ExcThread(monitor, started 140385233925888)>']
[2025-10-12 08:55:27] 2025-10-12 08:55:13,478 | INFO     | all workflow threads have been joined
[2025-10-12 08:55:27] 2025-10-12 08:55:13,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:55:27] 2025-10-12 08:55:13,479 | INFO     | traces error code: 0
[2025-10-12 08:55:27] 2025-10-12 08:55:13,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:55:27] 2025-10-12 08:55:27,106 | INFO     | PID=1675278 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:55:27] 2025-10-12 08:55:27,107 | INFO     | .. there are 17 such processes running
[2025-10-12 08:55:27] 2025-10-12 08:55:27,108 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:55:27] 2025-10-12 08:55:27,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:55:27] 2025-10-12 08:55:27,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:55:27] 2025-10-12 08:55:27,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:55:27] 2025-10-12 08:55:27,108 | INFO     | [monitor] control thread has ended
[2025-10-12 08:55:27] 2025-10-12 08:55:27,275 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:55:27] 2025-10-12 08:55:27,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:55:27] 2025-10-12 08:55:27,280 [wrapper] pilotpid: 1675278
[2025-10-12 08:55:27] 2025-10-12 08:55:27,282 [wrapper] Pilot exit status: 0
[2025-10-12 08:55:27] 2025-10-12 08:55:27,294 [wrapper] pandaids: 6838990099
[2025-10-12 08:55:27] 2025-10-12 08:55:27,425 [wrapper] cleanup supervisor_pilot 2006969 1675279
[2025-10-12 08:55:27] 2025-10-12 08:55:27,428 [wrapper] Test setup, not cleaning
[2025-10-12 08:55:27] 2025-10-12 08:55:27,431 [wrapper] apfmon messages muted
[2025-10-12 08:55:27] 2025-10-12 08:55:27,433 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:55:27] 2025-10-12 08:55:27,437 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:55:27]  *** Error codes and diagnostics ***
[2025-10-12 08:55:27]     "exeErrorCode": 0,
[2025-10-12 08:55:27]     "exeErrorDiag": "",
[2025-10-12 08:55:27]     "pilotErrorCode": 0,
[2025-10-12 08:55:27]     "pilotErrorDiag": "",
[2025-10-12 08:55:27]  *** Listing of results directory ***
[2025-10-12 08:55:27] total 420168
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:04 pilot3.tar.gz
[2025-10-12 08:55:27] -rwx------ 1 boinc boinc     36292 Oct 11 22:06 runpilot2-wrapper.sh
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:06 queuedata.json
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc       100 Oct 12 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:55:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 08:01 run_atlas
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc       105 Oct 12 08:01 job.xml
[2025-10-12 08:55:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:01 start_atlas.sh
[2025-10-12 08:55:27] drwxrwx--x 2 boinc boinc      4096 Oct 12 08:01 shared
[2025-10-12 08:55:27] -rw-r--r-- 2 boinc boinc    569673 Oct 12 08:01 input.tar.gz
[2025-10-12 08:55:27] -rw-r--r-- 2 boinc boinc 223045136 Oct 12 08:01 EVNT.46676267._002644.pool.root.1
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:01 boinc_setup_complete
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc      9395 Oct 12 08:01 init_data.xml
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:01 boinc_lockfile
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc      2550 Oct 12 08:01 pandaJob.out
[2025-10-12 08:55:27] -rw------- 1 boinc boinc    975520 Oct 12 08:02 agis_schedconf.cvmfs.json
[2025-10-12 08:55:27] -rw------- 1 boinc boinc   1560580 Oct 12 08:02 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:55:27] drwx------ 5 boinc boinc      4096 Oct 12 08:02 pilot3
[2025-10-12 08:55:27] -rw------- 1 boinc boinc 201636633 Oct 12 08:54 HITS.46676269._065820.pool.root.1
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc       529 Oct 12 08:54 boinc_task_state.xml
[2025-10-12 08:55:27] -rw------- 1 boinc boinc      1028 Oct 12 08:54 memory_monitor_summary.json
[2025-10-12 08:55:27] -rw------- 1 boinc boinc    364284 Oct 12 08:54 log.46676269._065820.job.log.tgz.1
[2025-10-12 08:55:27] -rw------- 1 boinc boinc      7748 Oct 12 08:54 heartbeat.json
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc        27 Oct 12 08:55 wrapper_checkpoint.txt
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc      8192 Oct 12 08:55 boinc_mmap_file
[2025-10-12 08:55:27] -rw------- 1 boinc boinc       823 Oct 12 08:55 pilotlog.txt
[2025-10-12 08:55:27] -rw------- 1 boinc boinc        95 Oct 12 08:55 pilot_heartbeat.json
[2025-10-12 08:55:27] -rw------- 1 boinc boinc    470644 Oct 12 08:55 log.46676269._065820.job.log.1
[2025-10-12 08:55:27] -rw------- 1 boinc boinc       357 Oct 12 08:55 output.list
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:55 runtime_log
[2025-10-12 08:55:27] -rw------- 1 boinc boinc    849920 Oct 12 08:55 result.tar.gz
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc      8658 Oct 12 08:55 runtime_log.err
[2025-10-12 08:55:27] -rw------- 1 boinc boinc       643 Oct 12 08:55 9UHNDm0uwR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDhSMDmZfJ4sm.diag
[2025-10-12 08:55:27] -rw-r--r-- 1 boinc boinc     21724 Oct 12 08:55 stderr.txt
[2025-10-12 08:55:27] HITS file was successfully produced:
[2025-10-12 08:55:27] -rw------- 1 boinc boinc 201636633 Oct 12 08:54 shared/HITS.pool.root.1
[2025-10-12 08:55:27]  *** Contents of shared directory: ***
[2025-10-12 08:55:27] total 416148
[2025-10-12 08:55:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:01 start_atlas.sh
[2025-10-12 08:55:27] -rw-r--r-- 2 boinc boinc    569673 Oct 12 08:01 input.tar.gz
[2025-10-12 08:55:27] -rw-r--r-- 2 boinc boinc 223045136 Oct 12 08:01 ATLAS.root_0
[2025-10-12 08:55:27] -rw------- 1 boinc boinc 201636633 Oct 12 08:54 HITS.pool.root.1
[2025-10-12 08:55:27] -rw------- 1 boinc boinc    849920 Oct 12 08:55 result.tar.gz
08:55:29 (1657226): run_atlas exited; CPU time 33520.544047
08:55:29 (1657226): called boinc_finish(0)

</stderr_txt>
]]>

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