Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:12:55 (1769503): wrapper (7.7.26015): starting
08:12:55 (1769503): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 08:12:55] Arguments: --nthreads 12
[2025-10-12 08:12:55] Threads: 12
[2025-10-12 08:12:55] Checking for CVMFS
[2025-10-12 08:12:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:12:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:12:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:12:56] 2.11.0.0 3299214 2806 83252 151612 0 188 5324588 6144001 14239 130560 0 55122716 100.000 98122 195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 08:12:56] CVMFS is ok
[2025-10-12 08:12:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:12:56] Checking for apptainer binary...
[2025-10-12 08:12:56] apptainer is not installed, using version from CVMFS
[2025-10-12 08:12:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:12:56] radiat0r
[2025-10-12 08:12:56] apptainer works
[2025-10-12 08:12:56] Set ATHENA_PROC_NUMBER=12
[2025-10-12 08:12:56] Set ATHENA_CORE_NUMBER=12
[2025-10-12 08:12:56] Starting ATLAS job with PandaID=6838851310
[2025-10-12 08:12:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:03:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:03:21] 2025-10-12 09:02:34,099 | INFO     | summary of transferred files:
[2025-10-12 09:03:21] 2025-10-12 09:02:34,099 | INFO     |  -- lfn=log.46676269._063612.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:03:21] 2025-10-12 09:02:34,099 | INFO     | stage-out finished correctly
[2025-10-12 09:03:21] 2025-10-12 09:02:34,200 | INFO     | monitor loop #208: job 0:6838851310 is in state 'finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:34,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:21] 2025-10-12 09:02:34,236 | INFO     | PID=1774226 has CPU usage=22.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 09:03:21] 2025-10-12 09:02:34,236 | INFO     | .. there are 17 such processes running
[2025-10-12 09:03:21] 2025-10-12 09:02:35,237 | INFO     | time since job start (2964s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:36,354 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:03:21] 2025-10-12 09:02:36,702 | INFO     | monitor loop #209: job 0:6838851310 is in state 'finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:36,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:21] 2025-10-12 09:02:37,242 | INFO     | time since job start (2966s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:37,652 | INFO     | job 6838851310 has state=finished
[2025-10-12 09:03:21] 2025-10-12 09:02:37,652 | INFO     | preparing for final server update for job 6838851310 in state='finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:39,206 | INFO     | monitor loop #210: job 0:6838851310 is in state 'finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:39,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:21] 2025-10-12 09:02:39,247 | INFO     | time since job start (2968s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:40,362 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 09:03:21] 2025-10-12 09:02:40,362 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:03:21] 2025-10-12 09:02:40,362 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:03:21] 2025-10-12 09:02:40,362 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:03:21] 2025-10-12 09:02:40,363 | INFO     | job 6838851310 has finished - writing final server update
[2025-10-12 09:03:21] 2025-10-12 09:02:40,363 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:03:21] 2025-10-12 09:02:40,365 | INFO     | executing command: lscpu
[2025-10-12 09:03:21] 2025-10-12 09:02:40,575 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:03:21] 2025-10-12 09:02:41,253 | INFO     | time since job start (2970s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:41,708 | INFO     | monitor loop #211: job 0:6838851310 is in state 'finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:41,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:21] 2025-10-12 09:02:43,259 | INFO     | time since job start (2972s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:44,210 | INFO     | monitor loop #212: job 0:6838851310 is in state 'finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:44,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:21] 2025-10-12 09:02:45,263 | INFO     | time since job start (2974s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:46,714 | INFO     | monitor loop #213: job 0:6838851310 is in state 'finished'
[2025-10-12 09:03:21] 2025-10-12 09:02:46,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,239 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 09:03:21] 2025-10-12 09:02:47,267 | INFO     | time since job start (2976s) is within the limit (172800.0s)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,305 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2372.7296171875005
[2025-10-12 09:03:21] 2025-10-12 09:02:47,376 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6838851310/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,377 | INFO     | extracted standard info from prmon json
[2025-10-12 09:03:21] 2025-10-12 09:02:47,377 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:03:21] 2025-10-12 09:02:47,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:03:21] 2025-10-12 09:02:47,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:03:21] 2025-10-12 09:02:47,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:03:21] 2025-10-12 09:02:47,379 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:03:21] 2025-10-12 09:02:47,379 | INFO     | sum of square deviations: 21358540.0
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | sum of deviations: -208045563.00000006
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | mean x: 1760258350.0
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | mean y: 2673745.1463414636
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | -- intersect: 17148693063.470589
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | intersect: 17148693063.470589
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | chi2: 0.0015656720333116865
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | -- intersect: 17148693063.470589
[2025-10-12 09:03:21] 2025-10-12 09:02:47,380 | INFO     | current memory leak: -9.74 B/s (using 41 data points, chi2=0.00)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | could have reported an average CPU frequency of 2366 MHz (5 samples)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | ..............................
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | . Timing measurements:
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | . get job = 0 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | . initial setup = 1 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | . payload setup = 8 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | . stage-in = 0 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,381 | INFO     | . payload execution = 2930 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,382 | INFO     | . stage-out = 1 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,382 | INFO     | . log creation = 0 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,382 | INFO     | ..............................
[2025-10-12 09:03:21] 2025-10-12 09:02:47,479 | INFO     | 
[2025-10-12 09:03:21] 2025-10-12 09:02:47,479 | INFO     | job summary report
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | --------------------------------------------------
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | PanDA job id: 6838851310
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | task id: 46676269
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | errors: (none)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | pilot state: finished 
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | transexitcode: 0
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | exeerrorcode: 0
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | exeerrordiag: 
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | exitcode: 0
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | exitmsg: OK
[2025-10-12 09:03:21] 2025-10-12 09:02:47,480 | INFO     | cpuconsumptiontime: 31093 s
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | nevents: 400
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | neventsw: 0
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | pid: 1784972
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | pgrp: 1784972
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | corecount: 12
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | event service: False
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | sizes: {0: 2348858, 7: 2349120, 11: 2349148, 2943: 2374683, 2945: 2383683, 2947: 2383739, 2958: 2384093}
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | --------------------------------------------------
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | 
[2025-10-12 09:03:21] 2025-10-12 09:02:47,481 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-10-12 09:03:21] 2025-10-12 09:02:47,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:03:21] 2025-10-12 09:02:47,516 | INFO     | job 6838851310 has completed (purged errors)
[2025-10-12 09:03:21] 2025-10-12 09:02:47,517 | INFO     | overall cleanup function is called
[2025-10-12 09:03:21] 2025-10-12 09:02:48,526 | INFO     | --- collectZombieJob: --- 10, [1784972]
[2025-10-12 09:03:21] 2025-10-12 09:02:48,527 | INFO     | zombie collector waiting for pid 1784972
[2025-10-12 09:03:21] 2025-10-12 09:02:48,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:03:21] 2025-10-12 09:02:48,527 | INFO     | collected zombie processes
[2025-10-12 09:03:21] 2025-10-12 09:02:48,527 | INFO     | will attempt to kill all subprocesses of pid=1784972
[2025-10-12 09:03:21] 2025-10-12 09:02:49,362 | INFO     | process IDs to be killed: [1784972] (in reverse order)
[2025-10-12 09:03:21] 2025-10-12 09:02:49,649 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:03:21] 2025-10-12 09:02:49,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:03:21] 2025-10-12 09:02:49,680 | INFO     | did not find any defunct processes belonging to 1784972
[2025-10-12 09:03:21] 2025-10-12 09:02:49,708 | INFO     | did not find any defunct processes belonging to 1784972
[2025-10-12 09:03:21] 2025-10-12 09:02:49,709 | INFO     | ready for new job
[2025-10-12 09:03:21] 2025-10-12 09:02:49,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:03:21] 2025-10-12 09:02:49,711 | INFO     | ***************************************
[2025-10-12 09:03:21] 2025-10-12 09:02:49,712 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:03:21] 2025-10-12 09:02:49,712 | INFO     | ***************************************
[2025-10-12 09:03:21] 2025-10-12 09:02:49,712 | INFO     | 
[2025-10-12 09:03:21] 2025-10-12 09:02:49,750 | INFO     | architecture information:
[2025-10-12 09:03:21] 2025-10-12 09:02:49,750 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:03:21] 2025-10-12 09:02:49,774 | INFO     | cat /etc/os-release:
[2025-10-12 09:03:21] NAME="CentOS Linux"
[2025-10-12 09:03:21] VERSION="7 (Core)"
[2025-10-12 09:03:21] ID="centos"
[2025-10-12 09:03:21] ID_LIKE="rhel fedora"
[2025-10-12 09:03:21] VERSION_ID="7"
[2025-10-12 09:03:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:03:21] ANSI_COLOR="0;31"
[2025-10-12 09:03:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:03:21] HOME_URL="https://www.centos.org/"
[2025-10-12 09:03:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:03:21] 
[2025-10-12 09:03:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:03:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:03:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:03:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:03:21] 
[2025-10-12 09:03:21] 2025-10-12 09:02:49,775 | INFO     | ***************************************
[2025-10-12 09:03:21] 2025-10-12 09:02:50,278 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-10-12 09:03:21] 2025-10-12 09:02:50,307 | INFO     | sufficient remaining disk space (1725695000576 B)
[2025-10-12 09:03:21] 2025-10-12 09:02:50,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:03:21] 2025-10-12 09:02:50,308 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:03:21] 2025-10-12 09:02:50,308 | INFO     | update_server=False
[2025-10-12 09:03:21] 2025-10-12 09:02:50,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:03:21] 2025-10-12 09:02:50,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:03:21] 2025-10-12 09:02:50,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:03:21] 2025-10-12 09:02:50,310 | INFO     | aborting loop
[2025-10-12 09:03:21] 2025-10-12 09:02:50,474 | INFO     | all job control threads have been joined
[2025-10-12 09:03:21] 2025-10-12 09:02:51,078 | INFO     | all data control threads have been joined
[2025-10-12 09:03:21] 2025-10-12 09:02:51,311 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:51,315 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:51,346 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:51,379 | INFO     | all payload control threads have been joined
[2025-10-12 09:03:21] 2025-10-12 09:02:51,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:03:21] 2025-10-12 09:02:51,480 | INFO     | [job] control thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:51,630 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:51,881 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:51,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,063 | INFO     | [job] validate thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,084 | INFO     | [data] control thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,140 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,269 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,314 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,385 | INFO     | [payload] control thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:52,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:03:21] 2025-10-12 09:02:52,514 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:53,490 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:02:55,462 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:03:21] 2025-10-12 09:03:15,362 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:03:21] 2025-10-12 09:03:15,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394913711936)>', '<ExcThread(monitor, started 140394335553280)>']
[2025-10-12 09:03:21] 2025-10-12 09:03:20,687 | INFO     | all workflow threads have been joined
[2025-10-12 09:03:21] 2025-10-12 09:03:20,687 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:03:21] 2025-10-12 09:03:20,688 | INFO     | traces error code: 0
[2025-10-12 09:03:21] 2025-10-12 09:03:20,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:03:21] 2025-10-12 09:03:21,309 | INFO     | PID=1774226 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:03:21] 2025-10-12 09:03:21,309 | INFO     | .. there are 17 such processes running
[2025-10-12 09:03:21] 2025-10-12 09:03:21,310 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:03:21] 2025-10-12 09:03:21,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:03:21] 2025-10-12 09:03:21,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:03:21] 2025-10-12 09:03:21,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:03:21] 2025-10-12 09:03:21,310 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 09:03:21] 2025-10-12 09:03:21,310 | INFO     | [monitor] control thread has ended
[2025-10-12 09:03:21] 2025-10-12 09:03:21,538 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:03:21] 2025-10-12 09:03:21,542 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:03:21] 2025-10-12 09:03:21,546 [wrapper] pilotpid: 1774226
[2025-10-12 09:03:21] 2025-10-12 09:03:21,550 [wrapper] Pilot exit status: 0
[2025-10-12 09:03:21] 2025-10-12 09:03:21,564 [wrapper] pandaids: 6838851310
[2025-10-12 09:03:21] 2025-10-12 09:03:21,742 [wrapper] cleanup supervisor_pilot 2157474 1774227
[2025-10-12 09:03:21] 2025-10-12 09:03:21,747 [wrapper] Test setup, not cleaning
[2025-10-12 09:03:21] 2025-10-12 09:03:21,750 [wrapper] apfmon messages muted
[2025-10-12 09:03:21] 2025-10-12 09:03:21,754 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:03:21] 2025-10-12 09:03:21,757 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:03:21]  *** Error codes and diagnostics ***
[2025-10-12 09:03:21]     "exeErrorCode": 0,
[2025-10-12 09:03:21]     "exeErrorDiag": "",
[2025-10-12 09:03:21]     "pilotErrorCode": 0,
[2025-10-12 09:03:21]     "pilotErrorDiag": "",
[2025-10-12 09:03:21]  *** Listing of results directory ***
[2025-10-12 09:03:21] total 404468
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc    557409 Oct 11 19:02 pilot3.tar.gz
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc      5112 Oct 11 19:37 queuedata.json
[2025-10-12 09:03:21] -rwx------ 1 boinc boinc     36292 Oct 11 19:39 runpilot2-wrapper.sh
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc       100 Oct 12 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:03:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 08:12 run_atlas
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc       105 Oct 12 08:12 job.xml
[2025-10-12 09:03:21] -rw-r--r-- 2 boinc boinc 220078164 Oct 12 08:12 EVNT.46676267._002556.pool.root.1
[2025-10-12 09:03:21] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:12 start_atlas.sh
[2025-10-12 09:03:21] drwxrwx--x 2 boinc boinc      4096 Oct 12 08:12 shared
[2025-10-12 09:03:21] -rw-r--r-- 2 boinc boinc    569678 Oct 12 08:12 input.tar.gz
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc      9396 Oct 12 08:12 init_data.xml
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:12 boinc_setup_complete
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:12 boinc_lockfile
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc      2550 Oct 12 08:12 pandaJob.out
[2025-10-12 09:03:21] -rw------- 1 boinc boinc    975520 Oct 12 08:13 agis_schedconf.cvmfs.json
[2025-10-12 09:03:21] -rw------- 1 boinc boinc   1560580 Oct 12 08:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:03:21] drwx------ 5 boinc boinc      4096 Oct 12 08:13 pilot3
[2025-10-12 09:03:21] -rw------- 1 boinc boinc 188590496 Oct 12 09:01 HITS.46676269._063612.pool.root.1
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc       529 Oct 12 09:01 boinc_task_state.xml
[2025-10-12 09:03:21] -rw------- 1 boinc boinc      1029 Oct 12 09:02 memory_monitor_summary.json
[2025-10-12 09:03:21] -rw------- 1 boinc boinc    353446 Oct 12 09:02 log.46676269._063612.job.log.tgz.1
[2025-10-12 09:03:21] -rw------- 1 boinc boinc      7743 Oct 12 09:02 heartbeat.json
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc        27 Oct 12 09:03 wrapper_checkpoint.txt
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:03 boinc_mmap_file
[2025-10-12 09:03:21] -rw------- 1 boinc boinc        95 Oct 12 09:03 pilot_heartbeat.json
[2025-10-12 09:03:21] -rw------- 1 boinc boinc       893 Oct 12 09:03 pilotlog.txt
[2025-10-12 09:03:21] -rw------- 1 boinc boinc    445825 Oct 12 09:03 log.46676269._063612.job.log.1
[2025-10-12 09:03:21] -rw------- 1 boinc boinc       357 Oct 12 09:03 output.list
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc       620 Oct 12 09:03 runtime_log
[2025-10-12 09:03:21] -rw------- 1 boinc boinc    819200 Oct 12 09:03 result.tar.gz
[2025-10-12 09:03:21] -rw------- 1 boinc boinc       644 Oct 12 09:03 xoLODmqbuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmPhNDm3BKRCo.diag
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc      8672 Oct 12 09:03 runtime_log.err
[2025-10-12 09:03:21] -rw-r--r-- 1 boinc boinc     21890 Oct 12 09:03 stderr.txt
[2025-10-12 09:03:21] HITS file was successfully produced:
[2025-10-12 09:03:21] -rw------- 1 boinc boinc 188590496 Oct 12 09:01 shared/HITS.pool.root.1
[2025-10-12 09:03:21]  *** Contents of shared directory: ***
[2025-10-12 09:03:21] total 400480
[2025-10-12 09:03:21] -rw-r--r-- 2 boinc boinc 220078164 Oct 12 08:12 ATLAS.root_0
[2025-10-12 09:03:21] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:12 start_atlas.sh
[2025-10-12 09:03:21] -rw-r--r-- 2 boinc boinc    569678 Oct 12 08:12 input.tar.gz
[2025-10-12 09:03:21] -rw------- 1 boinc boinc 188590496 Oct 12 09:01 HITS.pool.root.1
[2025-10-12 09:03:21] -rw------- 1 boinc boinc    819200 Oct 12 09:03 result.tar.gz
09:03:23 (1769503): run_atlas exited; CPU time 31259.247662
09:03:23 (1769503): called boinc_finish(0)

</stderr_txt>
]]>

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