Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:47:59 (2290756): wrapper (7.7.26015): starting
18:47:59 (2290756): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 18:47:59] Arguments: --nthreads 2
[2025-10-12 18:47:59] Threads: 2
[2025-10-12 18:47:59] Checking for CVMFS
[2025-10-12 18:48:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:48:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:48:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:48:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:48:00] 2.9.2.0 1187580 4636 61448 151627 0 57 26902048 36864001 0 130560 0 2903136 99.989 156815 946 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 18:48:00] CVMFS is ok
[2025-10-12 18:48:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:48:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:48:00] Further information can be found at the LHC@home message board.
[2025-10-12 18:48:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:48:00] Checking for apptainer binary...
[2025-10-12 18:48:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:48:00] Running /usr/bin/apptainer --version
[2025-10-12 18:48:00] apptainer version 1.4.1-1.1
[2025-10-12 18:48:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:48:00] thA314b
[2025-10-12 18:48:00] apptainer works
[2025-10-12 18:48:00] Set ATHENA_PROC_NUMBER=2
[2025-10-12 18:48:00] Set ATHENA_CORE_NUMBER=2
[2025-10-12 18:48:00] Starting ATLAS job with PandaID=6839242783
[2025-10-12 18:48:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:51:35]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | job 6839242783 has completed (purged errors)
[2025-10-12 20:51:35] 2025-10-12 18:51:04,160 | INFO     | overall cleanup function is called
[2025-10-12 20:51:35] 2025-10-12 18:51:05,166 | INFO     | --- collectZombieJob: --- 10, [2300876]
[2025-10-12 20:51:35] 2025-10-12 18:51:05,167 | INFO     | zombie collector waiting for pid 2300876
[2025-10-12 20:51:35] 2025-10-12 18:51:05,167 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:51:35] 2025-10-12 18:51:05,167 | INFO     | collected zombie processes
[2025-10-12 20:51:35] 2025-10-12 18:51:05,167 | INFO     | will attempt to kill all subprocesses of pid=2300876
[2025-10-12 20:51:35] 2025-10-12 18:51:05,200 | INFO     | process IDs to be killed: [2300876] (in reverse order)
[2025-10-12 20:51:35] 2025-10-12 18:51:05,220 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:51:35] 2025-10-12 18:51:05,221 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:51:35] 2025-10-12 18:51:05,221 | INFO     | did not find any defunct processes belonging to 2300876
[2025-10-12 20:51:35] 2025-10-12 18:51:05,222 | INFO     | did not find any defunct processes belonging to 2300876
[2025-10-12 20:51:35] 2025-10-12 18:51:05,222 | INFO     | ready for new job
[2025-10-12 20:51:35] 2025-10-12 18:51:05,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:51:35] 2025-10-12 18:51:05,223 | INFO     | ***************************************
[2025-10-12 20:51:35] 2025-10-12 18:51:05,223 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:51:35] 2025-10-12 18:51:05,223 | INFO     | ***************************************
[2025-10-12 20:51:35] 2025-10-12 18:51:05,223 | INFO     | 
[2025-10-12 20:51:35] 2025-10-12 18:51:05,223 | INFO     | architecture information:
[2025-10-12 20:51:35] 2025-10-12 18:51:05,223 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:51:35] 2025-10-12 18:51:05,231 | INFO     | cat /etc/os-release:
[2025-10-12 20:51:35] NAME="CentOS Linux"
[2025-10-12 20:51:35] VERSION="7 (Core)"
[2025-10-12 20:51:35] ID="centos"
[2025-10-12 20:51:35] ID_LIKE="rhel fedora"
[2025-10-12 20:51:35] VERSION_ID="7"
[2025-10-12 20:51:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:51:35] ANSI_COLOR="0;31"
[2025-10-12 20:51:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:51:35] HOME_URL="https://www.centos.org/"
[2025-10-12 20:51:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:51:35] 
[2025-10-12 20:51:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:51:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:51:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:51:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:51:35] 
[2025-10-12 20:51:35] 2025-10-12 18:51:05,231 | INFO     | ***************************************
[2025-10-12 20:51:35] 2025-10-12 18:51:05,734 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:51:35] 2025-10-12 18:51:05,746 | INFO     | sufficient remaining disk space (497164484608 B)
[2025-10-12 20:51:35] 2025-10-12 18:51:05,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:51:35] 2025-10-12 18:51:05,746 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:51:35] 2025-10-12 18:51:05,747 | INFO     | update_server=False
[2025-10-12 20:51:35] 2025-10-12 18:51:05,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:51:35] 2025-10-12 18:51:05,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:51:35] 2025-10-12 18:51:05,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:51:35] 2025-10-12 18:51:06,050 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 20:51:35] 2025-10-12 18:51:06,051 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 20:51:35] 2025-10-12 18:51:06,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:51:35] 2025-10-12 18:51:06,051 | INFO     | will abort loop
[2025-10-12 20:51:35] 2025-10-12 18:51:06,106 | INFO     | all payload control threads have been joined
[2025-10-12 20:51:35] 2025-10-12 18:51:06,109 | INFO     | all job control threads have been joined
[2025-10-12 20:51:35] 2025-10-12 18:51:06,692 | INFO     | all data control threads have been joined
[2025-10-12 20:51:35] 2025-10-12 18:51:06,752 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:06,753 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:06,921 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,056 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,112 | INFO     | [payload] control thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,114 | INFO     | [job] control thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,310 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,520 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,676 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,676 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,698 | INFO     | [data] control thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,742 | INFO     | [job] validate thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:07,836 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:08,355 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:08,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:51:35] 2025-10-12 18:51:12,785 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:16,589 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:51:35] 2025-10-12 18:51:17,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:51:35] 2025-10-12 18:51:24,459 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:51:35] 2025-10-12 18:51:24,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109575010112)>', '<ExcThread(monitor, started 140108795729664)>']
[2025-10-12 20:51:35] 2025-10-12 18:51:29,826 | INFO     | all workflow threads have been joined
[2025-10-12 20:51:35] 2025-10-12 18:51:29,827 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:51:35] 2025-10-12 18:51:29,828 | INFO     | traces error code: 0
[2025-10-12 20:51:35] 2025-10-12 18:51:29,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:51:35] 2025-10-12 18:51:35,729 | INFO     | PID=2294464 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:51:35] 2025-10-12 18:51:35,730 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:51:35] 2025-10-12 18:51:35,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:51:35] 2025-10-12 18:51:35,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:51:35] 2025-10-12 18:51:35,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:51:35] 2025-10-12 18:51:35,730 | INFO     | [monitor] control thread has ended
[2025-10-12 20:51:35] 2025-10-12 18:51:35,769 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:51:35] 2025-10-12 18:51:35,772 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:51:35] 2025-10-12 18:51:35,773 [wrapper] pilotpid: 2294464
[2025-10-12 20:51:35] 2025-10-12 18:51:35,776 [wrapper] Pilot exit status: 0
[2025-10-12 20:51:35] 2025-10-12 18:51:35,781 [wrapper] pandaids: 6839242783
[2025-10-12 20:51:35] 2025-10-12 18:51:35,792 [wrapper] cleanup supervisor_pilot 2314956 2294465
[2025-10-12 20:51:35] 2025-10-12 18:51:35,794 [wrapper] Test setup, not cleaning
[2025-10-12 20:51:35] 2025-10-12 18:51:35,796 [wrapper] apfmon messages muted
[2025-10-12 20:51:35] 2025-10-12 18:51:35,798 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:51:35] 2025-10-12 18:51:35,800 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:51:35]  *** Error codes and diagnostics ***
[2025-10-12 20:51:35]     "exeErrorCode": 0,
[2025-10-12 20:51:35]     "exeErrorDiag": "",
[2025-10-12 20:51:35]     "pilotErrorCode": 0,
[2025-10-12 20:51:35]     "pilotErrorDiag": "",
[2025-10-12 20:51:35]  *** Listing of results directory ***
[2025-10-12 20:51:35] total 413280
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:53 pilot3.tar.gz
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc      5112 Oct 12 04:14 queuedata.json
[2025-10-12 20:51:35] -rwx------ 1 boinc boinc     36292 Oct 12 04:15 runpilot2-wrapper.sh
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:51:35] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:47 run_atlas
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:47 job.xml
[2025-10-12 20:51:35] -rw-r--r-- 2 boinc boinc 222636997 Oct 12 18:47 EVNT.46676267._003178.pool.root.1
[2025-10-12 20:51:35] -rw-r--r-- 2 boinc boinc    569682 Oct 12 18:47 input.tar.gz
[2025-10-12 20:51:35] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:47 start_atlas.sh
[2025-10-12 20:51:35] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:47 shared
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:47 boinc_setup_complete
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc      6207 Oct 12 18:47 init_data.xml
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:47 boinc_lockfile
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc      2550 Oct 12 18:48 pandaJob.out
[2025-10-12 20:51:35] -rw------- 1 boinc boinc    975528 Oct 12 18:48 agis_schedconf.cvmfs.json
[2025-10-12 20:51:35] -rw------- 1 boinc boinc   1560580 Oct 12 18:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:51:35] drwx------ 5 boinc boinc      4096 Oct 12 18:48 pilot3
[2025-10-12 20:51:35] -rw------- 1 boinc boinc 193983104 Oct 12 20:50 HITS.46676269._069193.pool.root.1
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:50 boinc_task_state.xml
[2025-10-12 20:51:35] -rw------- 1 boinc boinc        95 Oct 12 20:50 pilot_heartbeat.json
[2025-10-12 20:51:35] -rw------- 1 boinc boinc      1015 Oct 12 20:50 memory_monitor_summary.json
[2025-10-12 20:51:35] -rw------- 1 boinc boinc    279733 Oct 12 20:50 log.46676269._069193.job.log.tgz.1
[2025-10-12 20:51:35] -rw------- 1 boinc boinc      7748 Oct 12 20:51 heartbeat.json
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:51 boinc_mmap_file
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:51 wrapper_checkpoint.txt
[2025-10-12 20:51:35] -rw------- 1 boinc boinc       747 Oct 12 20:51 pilotlog.txt
[2025-10-12 20:51:35] -rw------- 1 boinc boinc   1064085 Oct 12 20:51 log.46676269._069193.job.log.1
[2025-10-12 20:51:35] -rw------- 1 boinc boinc       357 Oct 12 20:51 output.list
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:51 runtime_log
[2025-10-12 20:51:35] -rw------- 1 boinc boinc   1361920 Oct 12 20:51 result.tar.gz
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc      8782 Oct 12 20:51 runtime_log.err
[2025-10-12 20:51:35] -rw------- 1 boinc boinc       660 Oct 12 20:51 iTwMDmCn0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmp0SMDmq3YyEm.diag
[2025-10-12 20:51:35] -rw-r--r-- 1 boinc boinc     11845 Oct 12 20:51 stderr.txt
[2025-10-12 20:51:35] HITS file was successfully produced:
[2025-10-12 20:51:35] -rw------- 1 boinc boinc 193983104 Oct 12 20:50 shared/HITS.pool.root.1
[2025-10-12 20:51:35]  *** Contents of shared directory: ***
[2025-10-12 20:51:35] total 408776
[2025-10-12 20:51:35] -rw-r--r-- 2 boinc boinc 222636997 Oct 12 18:47 ATLAS.root_0
[2025-10-12 20:51:35] -rw-r--r-- 2 boinc boinc    569682 Oct 12 18:47 input.tar.gz
[2025-10-12 20:51:35] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:47 start_atlas.sh
[2025-10-12 20:51:35] -rw------- 1 boinc boinc 193983104 Oct 12 20:50 HITS.pool.root.1
[2025-10-12 20:51:35] -rw------- 1 boinc boinc   1361920 Oct 12 20:51 result.tar.gz
20:51:37 (2290756): run_atlas exited; CPU time 14283.640160
20:51:37 (2290756): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN