Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:22:57 (7799): wrapper (7.7.26015): starting
03:22:57 (7799): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 03:22:57] Arguments: --nthreads 8
[2025-10-12 03:22:57] Threads: 8
[2025-10-12 03:22:57] Checking for CVMFS
[2025-10-12 03:22:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:22:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:22:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:22:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:22:57] 2.11.2.0 3213 627513 248892 151612 0 57 10279743 20275200 917 130560 1 357907549 99.992 26053790 20168 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 03:22:57] CVMFS is ok
[2025-10-12 03:22:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:22:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 03:22:57] Further information can be found at the LHC@home message board.
[2025-10-12 03:22:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:22:57] Checking for apptainer binary...
[2025-10-12 03:22:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:22:57] Running /usr/bin/apptainer --version
[2025-10-12 03:22:57] apptainer version 1.3.2-1.el7
[2025-10-12 03:22:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:22:58] c-205-38.aglt2.org
[2025-10-12 03:22:58] apptainer works
[2025-10-12 03:22:58] Set ATHENA_PROC_NUMBER=8
[2025-10-12 03:22:58] Set ATHENA_CORE_NUMBER=8
[2025-10-12 03:22:58] Starting ATLAS job with PandaID=6839316571
[2025-10-12 03:22:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 04:17:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 04:17:19]  replicas=None
[2025-10-12 04:17:19]  scope=mc23_13p6TeV
[2025-10-12 04:17:19]  status=None
[2025-10-12 04:17:19]  status_code=0
[2025-10-12 04:17:19]  storage_token=
[2025-10-12 04:17:19]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839316571/log.46676269._069241.job.log.tgz.1
[2025-10-12 04:17:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/f3/log.46676269._069241.job.log.tgz.1
[2025-10-12 04:17:19]  workdir=None
[2025-10-12 04:17:19] ]
[2025-10-12 04:17:19] 2025-10-12 08:16:23,159 | INFO     | transferring file log.46676269._069241.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839316571/log.46676269._069241.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 04:17:19] 2025-10-12 08:16:23,159 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839316571/log.46676269._069241.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._069241.job
[2025-10-12 04:17:19] 2025-10-12 08:16:23,178 | INFO     | adding to output.list: log.46676269._069241.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/f3/log.46676269._069241.job.log.tg
[2025-10-12 04:17:19] 2025-10-12 08:16:23,179 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 04:17:19] 2025-10-12 08:16:23,179 | INFO     | summary of transferred files:
[2025-10-12 04:17:19] 2025-10-12 08:16:23,179 | INFO     |  -- lfn=log.46676269._069241.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 04:17:19] 2025-10-12 08:16:23,180 | INFO     | stage-out finished correctly
[2025-10-12 04:17:19] 2025-10-12 08:16:23,961 | INFO     | PID=11507 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 04:17:19] 2025-10-12 08:16:23,961 | INFO     | .. there are 2 such processes running
[2025-10-12 04:17:19] 2025-10-12 08:16:24,587 | WARNING  | process 17970 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 04:17:19] 2025-10-12 08:16:24,587 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839316571/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 04:17:19] 2025-10-12 08:16:24,677 | INFO     | number of running child processes to parent process 17970: 1
[2025-10-12 04:17:19] 2025-10-12 08:16:24,677 | INFO     | maximum number of monitored processes: 6
[2025-10-12 04:17:19] 2025-10-12 08:16:24,962 | INFO     | time since job start (3197s) is within the limit (172800.0s)
[2025-10-12 04:17:19] 2025-10-12 08:16:25,006 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 04:17:19] 2025-10-12 08:16:25,088 | INFO     | job 6839316571 has state=finished
[2025-10-12 04:17:19] 2025-10-12 08:16:25,089 | INFO     | preparing for final server update for job 6839316571 in state='finished'
[2025-10-12 04:17:19] 2025-10-12 08:16:25,089 | INFO     | this job has now completed (state=finished)
[2025-10-12 04:17:19] 2025-10-12 08:16:25,089 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 04:17:19] 2025-10-12 08:16:25,089 | INFO     | log transfer has been attempted: DONE
[2025-10-12 04:17:19] 2025-10-12 08:16:25,090 | INFO     | job 6839316571 has finished - writing final server update
[2025-10-12 04:17:19] 2025-10-12 08:16:25,090 | INFO     | total number of processed events: 400 (read)
[2025-10-12 04:17:19] 2025-10-12 08:16:25,091 | INFO     | executing command: lscpu
[2025-10-12 04:17:19] 2025-10-12 08:16:25,117 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 04:17:19] 2025-10-12 08:16:26,967 | INFO     | time since job start (3199s) is within the limit (172800.0s)
[2025-10-12 04:17:19] 2025-10-12 08:16:27,179 | INFO     | monitor loop #243: job 0:6839316571 is in state 'finished'
[2025-10-12 04:17:19] 2025-10-12 08:16:27,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,447 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 04:17:19] 2025-10-12 08:16:28,450 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2772.1188125
[2025-10-12 04:17:19] 2025-10-12 08:16:28,452 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839316571/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,453 | INFO     | extracted standard info from prmon json
[2025-10-12 04:17:19] 2025-10-12 08:16:28,453 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 04:17:19] 2025-10-12 08:16:28,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 04:17:19] 2025-10-12 08:16:28,453 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 04:17:19] 2025-10-12 08:16:28,453 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 04:17:19] 2025-10-12 08:16:28,454 | INFO     | fitting pss+swap vs Time
[2025-10-12 04:17:19] 2025-10-12 08:16:28,454 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | sum of deviations: 466884606.00000006
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | mean x: 1760255455.0
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | mean y: 2667085.577777778
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | -- intersect: -29096717724.525963
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | intersect: -29096717724.525963
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | chi2: 0.00026614968445272754
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | -- intersect: -29096717724.525963
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | current memory leak: 16.53 B/s (using 45 data points, chi2=0.00)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,455 | INFO     | could have reported an average CPU frequency of 2588 MHz (5 samples)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | ..............................
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . Timing measurements:
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . get job = 0 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . initial setup = 2 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . payload setup = 4 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . stage-in = 0 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . payload execution = 3173 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . stage-out = 0 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | . log creation = 0 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,456 | INFO     | ..............................
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | 
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | job summary report
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | --------------------------------------------------
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | PanDA job id: 6839316571
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | task id: 46676269
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | errors: (none)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 04:17:19] 2025-10-12 08:16:28,513 | INFO     | pilot state: finished 
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | transexitcode: 0
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | exeerrorcode: 0
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | exeerrordiag: 
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | exitcode: 0
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | exitmsg: OK
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | cpuconsumptiontime: 23330 s
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | nevents: 400
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | neventsw: 0
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | pid: 17970
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | pgrp: 17970
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | corecount: 8
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | event service: False
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | sizes: {0: 2348807, 3: 2349069, 11: 2349097, 3181: 2374615, 3182: 2383613, 3184: 2383669, 3187: 2384023}
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | --------------------------------------------------
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | 
[2025-10-12 04:17:19] 2025-10-12 08:16:28,514 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | job 6839316571 has completed (purged errors)
[2025-10-12 04:17:19] 2025-10-12 08:16:28,536 | INFO     | overall cleanup function is called
[2025-10-12 04:17:19] 2025-10-12 08:16:29,543 | INFO     | --- collectZombieJob: --- 10, [17970]
[2025-10-12 04:17:19] 2025-10-12 08:16:29,543 | INFO     | zombie collector waiting for pid 17970
[2025-10-12 04:17:19] 2025-10-12 08:16:29,543 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 04:17:19] 2025-10-12 08:16:29,543 | INFO     | collected zombie processes
[2025-10-12 04:17:19] 2025-10-12 08:16:29,543 | INFO     | will attempt to kill all subprocesses of pid=17970
[2025-10-12 04:17:19] 2025-10-12 08:16:29,636 | INFO     | process IDs to be killed: [17970] (in reverse order)
[2025-10-12 04:17:19] 2025-10-12 08:16:29,684 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 04:17:19] 2025-10-12 08:16:29,684 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 04:17:19] 2025-10-12 08:16:29,686 | INFO     | did not find any defunct processes belonging to 17970
[2025-10-12 04:17:19] 2025-10-12 08:16:29,687 | INFO     | did not find any defunct processes belonging to 17970
[2025-10-12 04:17:19] 2025-10-12 08:16:29,687 | INFO     | ready for new job
[2025-10-12 04:17:19] 2025-10-12 08:16:29,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 04:17:19] 2025-10-12 08:16:29,689 | INFO     | ***************************************
[2025-10-12 04:17:19] 2025-10-12 08:16:29,689 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 04:17:19] 2025-10-12 08:16:29,689 | INFO     | ***************************************
[2025-10-12 04:17:19] 2025-10-12 08:16:29,689 | INFO     | 
[2025-10-12 04:17:19] 2025-10-12 08:16:29,690 | INFO     | architecture information:
[2025-10-12 04:17:19] 2025-10-12 08:16:29,690 | INFO     | executing command: cat /etc/os-release
[2025-10-12 04:17:19] 2025-10-12 08:16:29,702 | INFO     | cat /etc/os-release:
[2025-10-12 04:17:19] NAME="CentOS Linux"
[2025-10-12 04:17:19] VERSION="7 (Core)"
[2025-10-12 04:17:19] ID="centos"
[2025-10-12 04:17:19] ID_LIKE="rhel fedora"
[2025-10-12 04:17:19] VERSION_ID="7"
[2025-10-12 04:17:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 04:17:19] ANSI_COLOR="0;31"
[2025-10-12 04:17:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 04:17:19] HOME_URL="https://www.centos.org/"
[2025-10-12 04:17:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 04:17:19] 
[2025-10-12 04:17:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 04:17:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 04:17:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 04:17:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 04:17:19] 
[2025-10-12 04:17:19] 2025-10-12 08:16:29,703 | INFO     | ***************************************
[2025-10-12 04:17:19] 2025-10-12 08:16:30,206 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 04:17:19] 2025-10-12 08:16:30,223 | INFO     | sufficient remaining disk space (32635879424 B)
[2025-10-12 04:17:19] 2025-10-12 08:16:30,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 04:17:19] 2025-10-12 08:16:30,224 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 04:17:19] 2025-10-12 08:16:30,224 | INFO     | update_server=False
[2025-10-12 04:17:19] 2025-10-12 08:16:30,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 04:17:19] 2025-10-12 08:16:30,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:17:19] 2025-10-12 08:16:30,375 | INFO     | all payload control threads have been joined
[2025-10-12 04:17:19] 2025-10-12 08:16:30,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:17:19] 2025-10-12 08:16:30,688 | INFO     | aborting loop
[2025-10-12 04:17:19] 2025-10-12 08:16:31,093 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 04:17:19] 2025-10-12 08:16:31,229 | INFO     | [job] queue monitor thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:31,230 | INFO     | [job] retrieve thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:31,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 04:17:19] 2025-10-12 08:16:31,324 | INFO     | all data control threads have been joined
[2025-10-12 04:17:19] 2025-10-12 08:16:31,380 | INFO     | [payload] control thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:31,574 | INFO     | [payload] validate_post thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:31,591 | INFO     | all job control threads have been joined
[2025-10-12 04:17:19] 2025-10-12 08:16:31,689 | INFO     | [job] job monitor thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:31,844 | INFO     | [payload] failed_post thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,271 | INFO     | [job] validate thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,278 | INFO     | [data] copytool_in thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,328 | INFO     | [data] control thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,476 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,499 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,501 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,596 | INFO     | [job] control thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:32,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:33,258 | INFO     | [data] copytool_out thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:16:35,099 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 04:17:19] 2025-10-12 08:17:00,163 | INFO     | PID=11507 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 04:17:19] 2025-10-12 08:17:00,163 | INFO     | .. there are 2 such processes running
[2025-10-12 04:17:19] 2025-10-12 08:17:00,164 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 04:17:19] 2025-10-12 08:17:00,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 04:17:19] 2025-10-12 08:17:00,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 04:17:19] 2025-10-12 08:17:11,976 | INFO     | [monitor] cgroup control has ended
[2025-10-12 04:17:19] 2025-10-12 08:17:13,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140387999246144)>', '<ExcThread(monitor, started 140387574343424)>']
[2025-10-12 04:17:19] 2025-10-12 08:17:14,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 04:17:19] 2025-10-12 08:17:14,230 | INFO     | [monitor] control thread has ended
[2025-10-12 04:17:19] 2025-10-12 08:17:18,987 | INFO     | all workflow threads have been joined
[2025-10-12 04:17:19] 2025-10-12 08:17:18,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 04:17:19] 2025-10-12 08:17:18,988 | INFO     | traces error code: 0
[2025-10-12 04:17:19] 2025-10-12 08:17:18,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 04:17:19] 2025-10-12 08:17:19,064 [wrapper] ==== pilot stdout END ====
[2025-10-12 04:17:19] 2025-10-12 08:17:19,068 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 04:17:19] 2025-10-12 08:17:19,071 [wrapper] pilotpid: 11507
[2025-10-12 04:17:19] 2025-10-12 08:17:19,074 [wrapper] Pilot exit status: 0
[2025-10-12 04:17:19] 2025-10-12 08:17:19,083 [wrapper] pandaids: 6839316571
[2025-10-12 04:17:19] 2025-10-12 08:17:19,115 [wrapper] cleanup supervisor_pilot 25171 11508
[2025-10-12 04:17:19] 2025-10-12 08:17:19,118 [wrapper] Test setup, not cleaning
[2025-10-12 04:17:19] 2025-10-12 08:17:19,121 [wrapper] apfmon messages muted
[2025-10-12 04:17:19] 2025-10-12 08:17:19,123 [wrapper] ==== wrapper stdout END ====
[2025-10-12 04:17:19] 2025-10-12 08:17:19,125 [wrapper] ==== wrapper stderr END ====
[2025-10-12 04:17:19]  *** Error codes and diagnostics ***
[2025-10-12 04:17:19]     "exeErrorCode": 0,
[2025-10-12 04:17:19]     "exeErrorDiag": "",
[2025-10-12 04:17:19]     "pilotErrorCode": 0,
[2025-10-12 04:17:19]     "pilotErrorDiag": "",
[2025-10-12 04:17:19]  *** Listing of results directory ***
[2025-10-12 04:17:19] total 415584
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 21:53 pilot3.tar.gz
[2025-10-12 04:17:19] -rwx------ 1 boincer umatlas     36292 Oct 11 22:20 runpilot2-wrapper.sh
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 22:20 queuedata.json
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas       100 Oct 12 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 04:17:19] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 03:22 run_atlas
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas       105 Oct 12 03:22 job.xml
[2025-10-12 04:17:19] -rw-r--r-- 2 boincer umatlas 224571438 Oct 12 03:22 EVNT.46676267._001407.pool.root.1
[2025-10-12 04:17:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 03:22 start_atlas.sh
[2025-10-12 04:17:19] drwxrwx--x 2 boincer umatlas      4096 Oct 12 03:22 shared
[2025-10-12 04:17:19] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 03:22 input.tar.gz
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas         0 Oct 12 03:22 boinc_lockfile
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 03:22 pandaJob.out
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas    975520 Oct 12 03:23 agis_schedconf.cvmfs.json
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas   1560580 Oct 12 03:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 04:17:19] drwx------ 5 boincer umatlas      4096 Oct 12 03:23 pilot3
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas      6136 Oct 12 04:09 init_data.xml
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas 195482689 Oct 12 04:15 HITS.46676269._069241.pool.root.1
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas       529 Oct 12 04:16 boinc_task_state.xml
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas      1059 Oct 12 04:16 memory_monitor_summary.json
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas    301989 Oct 12 04:16 log.46676269._069241.job.log.tgz.1
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas      7835 Oct 12 04:16 heartbeat.json
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas        95 Oct 12 04:17 pilot_heartbeat.json
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 04:17 boinc_mmap_file
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas        27 Oct 12 04:17 wrapper_checkpoint.txt
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas      4821 Oct 12 04:17 pilotlog.txt
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas    493149 Oct 12 04:17 log.46676269._069241.job.log.1
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas       357 Oct 12 04:17 output.list
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas       620 Oct 12 04:17 runtime_log
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas    819200 Oct 12 04:17 result.tar.gz
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 04:17 runtime_log.err
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas       656 Oct 12 04:17 agnLDm9r0R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMKiNDmNGzShn.diag
[2025-10-12 04:17:19] -rw-r--r-- 1 boincer umatlas     21900 Oct 12 04:17 stderr.txt
[2025-10-12 04:17:19] HITS file was successfully produced:
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas 195482689 Oct 12 04:15 shared/HITS.pool.root.1
[2025-10-12 04:17:19]  *** Contents of shared directory: ***
[2025-10-12 04:17:19] total 411600
[2025-10-12 04:17:19] -rw-r--r-- 2 boincer umatlas 224571438 Oct 12 03:22 ATLAS.root_0
[2025-10-12 04:17:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 03:22 start_atlas.sh
[2025-10-12 04:17:19] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 03:22 input.tar.gz
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas 195482689 Oct 12 04:15 HITS.pool.root.1
[2025-10-12 04:17:19] -rw------- 1 boincer umatlas    819200 Oct 12 04:17 result.tar.gz
04:17:20 (7799): run_atlas exited; CPU time 23324.387305
04:17:20 (7799): called boinc_finish(0)

</stderr_txt>
]]>

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