Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:30:55 (2157081): wrapper (7.7.26015): starting
09:30:55 (2157081): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 09:30:55] Arguments: --nthreads 3
[2025-10-12 09:30:55] Threads: 3
[2025-10-12 09:30:55] Checking for CVMFS
[2025-10-12 09:30:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:30:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:30:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:30:56] 2.9.2.0 962579 3945 83164 151612 0 56 2715953 36864001 0 130560 0 3150973 99.991 133472 790 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 09:30:56] CVMFS is ok
[2025-10-12 09:30:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:30:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:30:56] Further information can be found at the LHC@home message board.
[2025-10-12 09:30:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:30:56] Checking for apptainer binary...
[2025-10-12 09:30:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:30:56] Running /usr/bin/apptainer --version
[2025-10-12 09:30:56] apptainer version 1.4.1-1.1
[2025-10-12 09:30:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:30:56] thA330b
[2025-10-12 09:30:56] apptainer works
[2025-10-12 09:30:56] Set ATHENA_PROC_NUMBER=3
[2025-10-12 09:30:56] Set ATHENA_CORE_NUMBER=3
[2025-10-12 09:30:56] Starting ATLAS job with PandaID=6839221468
[2025-10-12 09:30:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:55:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:55:18] 2025-10-12 08:54:59,586 | INFO     | did not find any defunct processes belonging to 2167233
[2025-10-12 10:55:18] 2025-10-12 08:54:59,587 | INFO     | did not find any defunct processes belonging to 2167233
[2025-10-12 10:55:18] 2025-10-12 08:54:59,587 | INFO     | ready for new job
[2025-10-12 10:55:18] 2025-10-12 08:54:59,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:55:18] 2025-10-12 08:54:59,588 | INFO     | ***************************************
[2025-10-12 10:55:18] 2025-10-12 08:54:59,588 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:55:18] 2025-10-12 08:54:59,588 | INFO     | ***************************************
[2025-10-12 10:55:18] 2025-10-12 08:54:59,588 | INFO     | 
[2025-10-12 10:55:18] 2025-10-12 08:54:59,588 | INFO     | architecture information:
[2025-10-12 10:55:18] 2025-10-12 08:54:59,588 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:55:18] 2025-10-12 08:54:59,596 | INFO     | cat /etc/os-release:
[2025-10-12 10:55:18] NAME="CentOS Linux"
[2025-10-12 10:55:18] VERSION="7 (Core)"
[2025-10-12 10:55:18] ID="centos"
[2025-10-12 10:55:18] ID_LIKE="rhel fedora"
[2025-10-12 10:55:18] VERSION_ID="7"
[2025-10-12 10:55:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:55:18] ANSI_COLOR="0;31"
[2025-10-12 10:55:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:55:18] HOME_URL="https://www.centos.org/"
[2025-10-12 10:55:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:55:18] 
[2025-10-12 10:55:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:55:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:55:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:55:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:55:18] 
[2025-10-12 10:55:18] 2025-10-12 08:54:59,597 | INFO     | ***************************************
[2025-10-12 10:55:18] 2025-10-12 08:55:00,099 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | INFO     | sufficient remaining disk space (259017146368 B)
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | INFO     | update_server=False
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:55:18] 2025-10-12 08:55:00,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:55:18] 2025-10-12 08:55:00,112 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:55:18] 2025-10-12 08:55:00,112 | INFO     | aborting loop
[2025-10-12 10:55:18] 2025-10-12 08:55:00,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:55:18] 2025-10-12 08:55:00,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:55:18] 2025-10-12 08:55:00,306 | INFO     | all payload control threads have been joined
[2025-10-12 10:55:18] 2025-10-12 08:55:00,802 | INFO     | all job control threads have been joined
[2025-10-12 10:55:18] 2025-10-12 08:55:01,099 | INFO     | all data control threads have been joined
[2025-10-12 10:55:18] 2025-10-12 08:55:01,117 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:01,117 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:01,117 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:01,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:55:18] 2025-10-12 08:55:01,312 | INFO     | [payload] control thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:01,379 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:01,788 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:01,808 | INFO     | [job] control thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:02,103 | INFO     | [data] control thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:02,206 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:02,254 | INFO     | [job] validate thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:02,309 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:02,349 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:02,436 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:03,294 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:04,118 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:07,733 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:55:18] 2025-10-12 08:55:10,683 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:55:18] 2025-10-12 08:55:11,689 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:55:18] 2025-10-12 08:55:13,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948126435136)>', '<ExcThread(monitor, started 139947273086720)>']
[2025-10-12 10:55:18] 2025-10-12 08:55:14,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:55:18] 2025-10-12 08:55:14,186 | INFO     | [monitor] control thread has ended
[2025-10-12 10:55:18] 2025-10-12 08:55:18,301 | INFO     | all workflow threads have been joined
[2025-10-12 10:55:18] 2025-10-12 08:55:18,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:55:18] 2025-10-12 08:55:18,301 | INFO     | traces error code: 0
[2025-10-12 10:55:18] 2025-10-12 08:55:18,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:55:18] 2025-10-12 08:55:18,351 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:55:18] 2025-10-12 08:55:18,353 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:55:18] 2025-10-12 08:55:18,356 [wrapper] pilotpid: 2160795
[2025-10-12 10:55:18] 2025-10-12 08:55:18,358 [wrapper] Pilot exit status: 0
[2025-10-12 10:55:18] 2025-10-12 08:55:18,365 [wrapper] pandaids: 6839221468
[2025-10-12 10:55:18] 2025-10-12 08:55:18,382 [wrapper] cleanup supervisor_pilot 2179142 2160796
[2025-10-12 10:55:18] 2025-10-12 08:55:18,384 [wrapper] Test setup, not cleaning
[2025-10-12 10:55:18] 2025-10-12 08:55:18,387 [wrapper] apfmon messages muted
[2025-10-12 10:55:18] 2025-10-12 08:55:18,389 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:55:18] 2025-10-12 08:55:18,391 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:55:18]  *** Error codes and diagnostics ***
[2025-10-12 10:55:18]     "exeErrorCode": 0,
[2025-10-12 10:55:18]     "exeErrorDiag": "",
[2025-10-12 10:55:18]     "pilotErrorCode": 0,
[2025-10-12 10:55:18]     "pilotErrorDiag": "",
[2025-10-12 10:55:18]  *** Listing of results directory ***
[2025-10-12 10:55:18] total 417104
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:26 pilot3.tar.gz
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:30 queuedata.json
[2025-10-12 10:55:18] -rwx------ 1 boinc boinc     36292 Oct 12 03:30 runpilot2-wrapper.sh
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:55:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:30 run_atlas
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:30 job.xml
[2025-10-12 10:55:18] -rw-r--r-- 2 boinc boinc 221035123 Oct 12 09:30 EVNT.46676267._003151.pool.root.1
[2025-10-12 10:55:18] -rw-r--r-- 2 boinc boinc    569676 Oct 12 09:30 input.tar.gz
[2025-10-12 10:55:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:30 start_atlas.sh
[2025-10-12 10:55:18] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:30 shared
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:30 boinc_setup_complete
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc      6439 Oct 12 09:30 init_data.xml
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:30 boinc_lockfile
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc      2547 Oct 12 09:30 pandaJob.out
[2025-10-12 10:55:18] -rw------- 1 boinc boinc    975520 Oct 12 09:31 agis_schedconf.cvmfs.json
[2025-10-12 10:55:18] -rw------- 1 boinc boinc   1560580 Oct 12 09:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:55:18] drwx------ 5 boinc boinc      4096 Oct 12 09:31 pilot3
[2025-10-12 10:55:18] -rw------- 1 boinc boinc        95 Oct 12 10:54 pilot_heartbeat.json
[2025-10-12 10:55:18] -rw------- 1 boinc boinc 200231724 Oct 12 10:54 HITS.46676269._068553.pool.root.1
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc       529 Oct 12 10:54 boinc_task_state.xml
[2025-10-12 10:55:18] -rw------- 1 boinc boinc      1028 Oct 12 10:54 memory_monitor_summary.json
[2025-10-12 10:55:18] -rw------- 1 boinc boinc    240587 Oct 12 10:54 log.46676269._068553.job.log.tgz.1
[2025-10-12 10:55:18] -rw------- 1 boinc boinc      7761 Oct 12 10:54 heartbeat.json
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:55 wrapper_checkpoint.txt
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:55 boinc_mmap_file
[2025-10-12 10:55:18] -rw------- 1 boinc boinc      4628 Oct 12 10:55 pilotlog.txt
[2025-10-12 10:55:18] -rw------- 1 boinc boinc    737678 Oct 12 10:55 log.46676269._068553.job.log.1
[2025-10-12 10:55:18] -rw------- 1 boinc boinc       357 Oct 12 10:55 output.list
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:55 runtime_log
[2025-10-12 10:55:18] -rw------- 1 boinc boinc    993280 Oct 12 10:55 result.tar.gz
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc      8782 Oct 12 10:55 runtime_log.err
[2025-10-12 10:55:18] -rw------- 1 boinc boinc       659 Oct 12 10:55 pzJKDmG6zR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvCiNDmq6fDTn.diag
[2025-10-12 10:55:18] -rw-r--r-- 1 boinc boinc      9770 Oct 12 10:55 stderr.txt
[2025-10-12 10:55:18] HITS file was successfully produced:
[2025-10-12 10:55:18] -rw------- 1 boinc boinc 200231724 Oct 12 10:54 shared/HITS.pool.root.1
[2025-10-12 10:55:18]  *** Contents of shared directory: ***
[2025-10-12 10:55:18] total 412952
[2025-10-12 10:55:18] -rw-r--r-- 2 boinc boinc 221035123 Oct 12 09:30 ATLAS.root_0
[2025-10-12 10:55:18] -rw-r--r-- 2 boinc boinc    569676 Oct 12 09:30 input.tar.gz
[2025-10-12 10:55:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:30 start_atlas.sh
[2025-10-12 10:55:18] -rw------- 1 boinc boinc 200231724 Oct 12 10:54 HITS.pool.root.1
[2025-10-12 10:55:18] -rw------- 1 boinc boinc    993280 Oct 12 10:55 result.tar.gz
10:55:20 (2157081): run_atlas exited; CPU time 14458.862277
10:55:20 (2157081): called boinc_finish(0)

</stderr_txt>
]]>

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