Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:23 (3095672): wrapper (7.7.26015): starting
17:39:23 (3095672): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 17:39:23] Arguments: --nthreads 3
[2025-10-12 17:39:23] Threads: 3
[2025-10-12 17:39:23] Checking for CVMFS
[2025-10-12 17:39:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:39:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:39:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:39:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:39:23] 2.9.2.0 1692675 4565 87840 151625 2 57 29467098 36864001 0 130560 0 3675892 99.991 156388 969 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 17:39:23] CVMFS is ok
[2025-10-12 17:39:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:39:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:39:24] Further information can be found at the LHC@home message board.
[2025-10-12 17:39:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:39:24] Checking for apptainer binary...
[2025-10-12 17:39:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:39:24] Running /usr/bin/apptainer --version
[2025-10-12 17:39:24] apptainer version 1.4.1-1.1
[2025-10-12 17:39:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:39:24] thA337a
[2025-10-12 17:39:24] apptainer works
[2025-10-12 17:39:24] Set ATHENA_PROC_NUMBER=3
[2025-10-12 17:39:24] Set ATHENA_CORE_NUMBER=3
[2025-10-12 17:39:24] Starting ATLAS job with PandaID=6839163102
[2025-10-12 17:39:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:01:43]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:01:43] 2025-10-12 17:01:12,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:01:43] 2025-10-12 17:01:12,611 | INFO     | collected zombie processes
[2025-10-12 19:01:43] 2025-10-12 17:01:12,611 | INFO     | will attempt to kill all subprocesses of pid=3105821
[2025-10-12 19:01:43] 2025-10-12 17:01:12,652 | INFO     | process IDs to be killed: [3105821] (in reverse order)
[2025-10-12 19:01:43] 2025-10-12 17:01:12,678 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:01:43] 2025-10-12 17:01:12,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:01:43] 2025-10-12 17:01:12,679 | INFO     | did not find any defunct processes belonging to 3105821
[2025-10-12 19:01:43] 2025-10-12 17:01:12,680 | INFO     | did not find any defunct processes belonging to 3105821
[2025-10-12 19:01:43] 2025-10-12 17:01:12,680 | INFO     | ready for new job
[2025-10-12 19:01:43] 2025-10-12 17:01:12,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:01:43] 2025-10-12 17:01:12,681 | INFO     | ***************************************
[2025-10-12 19:01:43] 2025-10-12 17:01:12,681 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:01:43] 2025-10-12 17:01:12,681 | INFO     | ***************************************
[2025-10-12 19:01:43] 2025-10-12 17:01:12,681 | INFO     | 
[2025-10-12 19:01:43] 2025-10-12 17:01:12,681 | INFO     | architecture information:
[2025-10-12 19:01:43] 2025-10-12 17:01:12,681 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:01:43] 2025-10-12 17:01:12,690 | INFO     | cat /etc/os-release:
[2025-10-12 19:01:43] NAME="CentOS Linux"
[2025-10-12 19:01:43] VERSION="7 (Core)"
[2025-10-12 19:01:43] ID="centos"
[2025-10-12 19:01:43] ID_LIKE="rhel fedora"
[2025-10-12 19:01:43] VERSION_ID="7"
[2025-10-12 19:01:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:01:43] ANSI_COLOR="0;31"
[2025-10-12 19:01:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:01:43] HOME_URL="https://www.centos.org/"
[2025-10-12 19:01:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:01:43] 
[2025-10-12 19:01:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:01:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:01:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:01:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:01:43] 
[2025-10-12 19:01:43] 2025-10-12 17:01:12,690 | INFO     | ***************************************
[2025-10-12 19:01:43] 2025-10-12 17:01:13,193 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:01:43] 2025-10-12 17:01:13,206 | INFO     | sufficient remaining disk space (375427956736 B)
[2025-10-12 19:01:43] 2025-10-12 17:01:13,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:01:43] 2025-10-12 17:01:13,207 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:01:43] 2025-10-12 17:01:13,207 | INFO     | update_server=False
[2025-10-12 19:01:43] 2025-10-12 17:01:13,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:01:43] 2025-10-12 17:01:13,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:01:43] 2025-10-12 17:01:13,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:01:43] 2025-10-12 17:01:13,366 | INFO     | all job control threads have been joined
[2025-10-12 19:01:43] 2025-10-12 17:01:13,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:01:43] 2025-10-12 17:01:13,417 | INFO     | aborting loop
[2025-10-12 19:01:43] 2025-10-12 17:01:13,764 | INFO     | all payload control threads have been joined
[2025-10-12 19:01:43] 2025-10-12 17:01:14,211 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:14,211 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:14,265 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:14,269 | INFO     | all data control threads have been joined
[2025-10-12 19:01:43] 2025-10-12 17:01:14,372 | INFO     | [job] control thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:14,422 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:14,510 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:14,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:01:43] 2025-10-12 17:01:14,770 | INFO     | [payload] control thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:15,044 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:15,275 | INFO     | [data] control thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:15,343 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:15,346 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:15,664 | INFO     | [job] validate thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:15,694 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:16,681 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:17,214 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:23,528 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:01:43] 2025-10-12 17:01:24,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:01:43] 2025-10-12 17:01:36,182 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:01:43] 2025-10-12 17:01:37,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229395711808)>', '<ExcThread(monitor, started 140228417263360)>']
[2025-10-12 19:01:43] 2025-10-12 17:01:42,908 | INFO     | all workflow threads have been joined
[2025-10-12 19:01:43] 2025-10-12 17:01:42,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:01:43] 2025-10-12 17:01:42,908 | INFO     | traces error code: 0
[2025-10-12 19:01:43] 2025-10-12 17:01:42,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:01:43] 2025-10-12 17:01:43,622 | INFO     | PID=3099393 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:01:43] 2025-10-12 17:01:43,622 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:01:43] 2025-10-12 17:01:43,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:01:43] 2025-10-12 17:01:43,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:01:43] 2025-10-12 17:01:43,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:01:43] 2025-10-12 17:01:43,622 | INFO     | [monitor] control thread has ended
[2025-10-12 19:01:43] 2025-10-12 17:01:43,668 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:01:43] 2025-10-12 17:01:43,670 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:01:43] 2025-10-12 17:01:43,673 [wrapper] pilotpid: 3099393
[2025-10-12 19:01:43] 2025-10-12 17:01:43,675 [wrapper] Pilot exit status: 0
[2025-10-12 19:01:43] 2025-10-12 17:01:43,683 [wrapper] pandaids: 6839163102
[2025-10-12 19:01:43] 2025-10-12 17:01:43,700 [wrapper] cleanup supervisor_pilot 3117809 3099394
[2025-10-12 19:01:43] 2025-10-12 17:01:43,702 [wrapper] Test setup, not cleaning
[2025-10-12 19:01:43] 2025-10-12 17:01:43,705 [wrapper] apfmon messages muted
[2025-10-12 19:01:43] 2025-10-12 17:01:43,707 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:01:43] 2025-10-12 17:01:43,710 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:01:43]  *** Error codes and diagnostics ***
[2025-10-12 19:01:43]     "exeErrorCode": 0,
[2025-10-12 19:01:43]     "exeErrorDiag": "",
[2025-10-12 19:01:43]     "pilotErrorCode": 0,
[2025-10-12 19:01:43]     "pilotErrorDiag": "",
[2025-10-12 19:01:43]  *** Listing of results directory ***
[2025-10-12 19:01:43] total 413604
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc    557409 Oct 12 01:21 pilot3.tar.gz
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:51 queuedata.json
[2025-10-12 19:01:43] -rwx------ 1 boinc boinc     36292 Oct 12 01:52 runpilot2-wrapper.sh
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:01:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:39 run_atlas
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:39 job.xml
[2025-10-12 19:01:43] -rw-r--r-- 2 boinc boinc 221220177 Oct 12 17:39 EVNT.46676267._002738.pool.root.1
[2025-10-12 19:01:43] -rw-r--r-- 2 boinc boinc    569677 Oct 12 17:39 input.tar.gz
[2025-10-12 19:01:43] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:39 start_atlas.sh
[2025-10-12 19:01:43] drwxrwx--x 2 boinc boinc      4096 Oct 12 17:39 shared
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:39 boinc_setup_complete
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc      6447 Oct 12 17:39 init_data.xml
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:39 boinc_lockfile
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc      2550 Oct 12 17:39 pandaJob.out
[2025-10-12 19:01:43] -rw------- 1 boinc boinc    975528 Oct 12 17:39 agis_schedconf.cvmfs.json
[2025-10-12 19:01:43] -rw------- 1 boinc boinc   1560580 Oct 12 17:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:01:43] drwx------ 5 boinc boinc      4096 Oct 12 17:39 pilot3
[2025-10-12 19:01:43] -rw------- 1 boinc boinc 196452607 Oct 12 19:00 HITS.46676269._067266.pool.root.1
[2025-10-12 19:01:43] -rw------- 1 boinc boinc        95 Oct 12 19:00 pilot_heartbeat.json
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:00 boinc_task_state.xml
[2025-10-12 19:01:43] -rw------- 1 boinc boinc      1014 Oct 12 19:00 memory_monitor_summary.json
[2025-10-12 19:01:43] -rw------- 1 boinc boinc    261409 Oct 12 19:01 log.46676269._067266.job.log.tgz.1
[2025-10-12 19:01:43] -rw------- 1 boinc boinc      7769 Oct 12 19:01 heartbeat.json
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:01 wrapper_checkpoint.txt
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:01 boinc_mmap_file
[2025-10-12 19:01:43] -rw------- 1 boinc boinc       747 Oct 12 19:01 pilotlog.txt
[2025-10-12 19:01:43] -rw------- 1 boinc boinc    720933 Oct 12 19:01 log.46676269._067266.job.log.1
[2025-10-12 19:01:43] -rw------- 1 boinc boinc       357 Oct 12 19:01 output.list
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:01 runtime_log
[2025-10-12 19:01:43] -rw------- 1 boinc boinc   1003520 Oct 12 19:01 result.tar.gz
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc      8782 Oct 12 19:01 runtime_log.err
[2025-10-12 19:01:43] -rw------- 1 boinc boinc       659 Oct 12 19:01 gQGKDmQZyR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk0hNDm3V74Qn.diag
[2025-10-12 19:01:43] -rw-r--r-- 1 boinc boinc     10509 Oct 12 19:01 stderr.txt
[2025-10-12 19:01:43] HITS file was successfully produced:
[2025-10-12 19:01:43] -rw------- 1 boinc boinc 196452607 Oct 12 19:00 shared/HITS.pool.root.1
[2025-10-12 19:01:43]  *** Contents of shared directory: ***
[2025-10-12 19:01:43] total 409452
[2025-10-12 19:01:43] -rw-r--r-- 2 boinc boinc 221220177 Oct 12 17:39 ATLAS.root_0
[2025-10-12 19:01:43] -rw-r--r-- 2 boinc boinc    569677 Oct 12 17:39 input.tar.gz
[2025-10-12 19:01:43] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:39 start_atlas.sh
[2025-10-12 19:01:43] -rw------- 1 boinc boinc 196452607 Oct 12 19:00 HITS.pool.root.1
[2025-10-12 19:01:43] -rw------- 1 boinc boinc   1003520 Oct 12 19:01 result.tar.gz
19:01:44 (3095672): run_atlas exited; CPU time 14069.150892
19:01:44 (3095672): called boinc_finish(0)

</stderr_txt>
]]>

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