Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:15:03 (22398): wrapper (7.7.26015): starting
03:15:03 (22398): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 03:15:03] Arguments: --nthreads 12
[2025-10-12 03:15:03] Threads: 12
[2025-10-12 03:15:03] Checking for CVMFS
[2025-10-12 03:15:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:15:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:15:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:15:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:15:04] 2.11.2.0 2925 222569 99124 151612 2 56 10939299 20275200 1 130560 1 107920605 99.984 12882332 12165 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 03:15:04] CVMFS is ok
[2025-10-12 03:15:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:15:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 03:15:04] Further information can be found at the LHC@home message board.
[2025-10-12 03:15:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:15:04] Checking for apptainer binary...
[2025-10-12 03:15:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:15:04] Running /usr/bin/apptainer --version
[2025-10-12 03:15:04] apptainer version 1.3.2-1.el7
[2025-10-12 03:15:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:15:05] c-205-10.aglt2.org
[2025-10-12 03:15:05] apptainer works
[2025-10-12 03:15:05] Set ATHENA_PROC_NUMBER=12
[2025-10-12 03:15:05] Set ATHENA_CORE_NUMBER=12
[2025-10-12 03:15:05] Starting ATLAS job with PandaID=6839242538
[2025-10-12 03:15:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 04:32:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 04:32:46]  lfn=log.46676269._069073.job.log.tgz.1
[2025-10-12 04:32:46]  mtime=0
[2025-10-12 04:32:46]  protocol_id=None
[2025-10-12 04:32:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 04:32:46]  replicas=None
[2025-10-12 04:32:46]  scope=mc23_13p6TeV
[2025-10-12 04:32:46]  status=None
[2025-10-12 04:32:46]  status_code=0
[2025-10-12 04:32:46]  storage_token=
[2025-10-12 04:32:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839242538/log.46676269._069073.job.log.tgz.1
[2025-10-12 04:32:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/dc/log.46676269._069073.job.log.tgz.1
[2025-10-12 04:32:46]  workdir=None
[2025-10-12 04:32:46] ]
[2025-10-12 04:32:46] 2025-10-12 08:32:08,256 | INFO     | transferring file log.46676269._069073.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839242538/log.46676269._069073.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 04:32:46] 2025-10-12 08:32:08,257 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839242538/log.46676269._069073.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._069073.job
[2025-10-12 04:32:46] 2025-10-12 08:32:08,279 | INFO     | adding to output.list: log.46676269._069073.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/dc/log.46676269._069073.job.log.tg
[2025-10-12 04:32:46] 2025-10-12 08:32:08,280 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 04:32:46] 2025-10-12 08:32:08,280 | INFO     | summary of transferred files:
[2025-10-12 04:32:46] 2025-10-12 08:32:08,281 | INFO     |  -- lfn=log.46676269._069073.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 04:32:46] 2025-10-12 08:32:08,281 | INFO     | stage-out finished correctly
[2025-10-12 04:32:46] 2025-10-12 08:32:08,366 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 04:32:46] 2025-10-12 08:32:08,448 | INFO     | job 6839242538 has state=finished
[2025-10-12 04:32:46] 2025-10-12 08:32:08,449 | INFO     | preparing for final server update for job 6839242538 in state='finished'
[2025-10-12 04:32:46] 2025-10-12 08:32:08,449 | INFO     | this job has now completed (state=finished)
[2025-10-12 04:32:46] 2025-10-12 08:32:08,450 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 04:32:46] 2025-10-12 08:32:08,450 | INFO     | log transfer has been attempted: DONE
[2025-10-12 04:32:46] 2025-10-12 08:32:08,450 | INFO     | job 6839242538 has finished - writing final server update
[2025-10-12 04:32:46] 2025-10-12 08:32:08,450 | INFO     | total number of processed events: 400 (read)
[2025-10-12 04:32:46] 2025-10-12 08:32:08,451 | INFO     | executing command: lscpu
[2025-10-12 04:32:46] 2025-10-12 08:32:08,478 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 04:32:46] 2025-10-12 08:32:08,775 | INFO     | time since job start (4608s) is within the limit (172800.0s)
[2025-10-12 04:32:46] 2025-10-12 08:32:10,780 | INFO     | time since job start (4610s) is within the limit (172800.0s)
[2025-10-12 04:32:46] 2025-10-12 08:32:12,348 | WARNING  | process 32455 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 04:32:46] 2025-10-12 08:32:12,372 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839242538/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 04:32:46] 2025-10-12 08:32:12,459 | INFO     | number of running child processes to parent process 32455: 1
[2025-10-12 04:32:46] 2025-10-12 08:32:12,459 | INFO     | maximum number of monitored processes: 6
[2025-10-12 04:32:46] 2025-10-12 08:32:12,786 | INFO     | time since job start (4612s) is within the limit (172800.0s)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,618 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 04:32:46] 2025-10-12 08:32:13,622 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 04:32:46] 2025-10-12 08:32:13,625 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839242538/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,626 | INFO     | extracted standard info from prmon json
[2025-10-12 04:32:46] 2025-10-12 08:32:13,626 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 04:32:46] 2025-10-12 08:32:13,627 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 04:32:46] 2025-10-12 08:32:13,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 04:32:46] 2025-10-12 08:32:13,627 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 04:32:46] 2025-10-12 08:32:13,629 | INFO     | fitting pss+swap vs Time
[2025-10-12 04:32:46] 2025-10-12 08:32:13,629 | INFO     | sum of square deviations: 97479037.0
[2025-10-12 04:32:46] 2025-10-12 08:32:13,629 | INFO     | sum of deviations: -521999234.4999995
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | mean x: 1760255698.5
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | mean y: 2925075.1911764704
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | -- intersect: 9429076126.94256
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | intersect: 9429076126.94256
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | chi2: 0.1312687537982904
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | -- intersect: 9429076126.94256
[2025-10-12 04:32:46] 2025-10-12 08:32:13,630 | INFO     | current memory leak: -5.35 B/s (using 68 data points, chi2=0.13)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | could have reported an average CPU frequency of 2060 MHz (6 samples)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | ..............................
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | . Timing measurements:
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | . get job = 0 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | . initial setup = 2 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | . payload setup = 7 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,631 | INFO     | . stage-in = 0 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,632 | INFO     | . payload execution = 4579 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,632 | INFO     | . stage-out = 0 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,632 | INFO     | . log creation = 0 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,632 | INFO     | ..............................
[2025-10-12 04:32:46] 2025-10-12 08:32:13,920 | INFO     | 
[2025-10-12 04:32:46] 2025-10-12 08:32:13,921 | INFO     | job summary report
[2025-10-12 04:32:46] 2025-10-12 08:32:13,921 | INFO     | --------------------------------------------------
[2025-10-12 04:32:46] 2025-10-12 08:32:13,921 | INFO     | PanDA job id: 6839242538
[2025-10-12 04:32:46] 2025-10-12 08:32:13,921 | INFO     | task id: 46676269
[2025-10-12 04:32:46] 2025-10-12 08:32:13,921 | INFO     | errors: (none)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,921 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 04:32:46] 2025-10-12 08:32:13,922 | INFO     | pilot state: finished 
[2025-10-12 04:32:46] 2025-10-12 08:32:13,922 | INFO     | transexitcode: 0
[2025-10-12 04:32:46] 2025-10-12 08:32:13,922 | INFO     | exeerrorcode: 0
[2025-10-12 04:32:46] 2025-10-12 08:32:13,922 | INFO     | exeerrordiag: 
[2025-10-12 04:32:46] 2025-10-12 08:32:13,922 | INFO     | exitcode: 0
[2025-10-12 04:32:46] 2025-10-12 08:32:13,922 | INFO     | exitmsg: OK
[2025-10-12 04:32:46] 2025-10-12 08:32:13,923 | INFO     | cpuconsumptiontime: 48555 s
[2025-10-12 04:32:46] 2025-10-12 08:32:13,923 | INFO     | nevents: 400
[2025-10-12 04:32:46] 2025-10-12 08:32:13,923 | INFO     | neventsw: 0
[2025-10-12 04:32:46] 2025-10-12 08:32:13,923 | INFO     | pid: 32455
[2025-10-12 04:32:46] 2025-10-12 08:32:13,923 | INFO     | pgrp: 32455
[2025-10-12 04:32:46] 2025-10-12 08:32:13,923 | INFO     | corecount: 12
[2025-10-12 04:32:46] 2025-10-12 08:32:13,924 | INFO     | event service: False
[2025-10-12 04:32:46] 2025-10-12 08:32:13,924 | INFO     | sizes: {0: 2348684, 1: 2348883, 6: 2349145, 11: 2349173, 4590: 2375306, 4591: 2384487, 4592: 2384487, 4597: 2384681}
[2025-10-12 04:32:46] 2025-10-12 08:32:13,924 | INFO     | --------------------------------------------------
[2025-10-12 04:32:46] 2025-10-12 08:32:13,924 | INFO     | 
[2025-10-12 04:32:46] 2025-10-12 08:32:13,924 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 04:32:46] 2025-10-12 08:32:13,950 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,950 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,950 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,950 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,951 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,951 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,951 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,951 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,953 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,953 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,953 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 04:32:46] 2025-10-12 08:32:13,954 | INFO     | job 6839242538 has completed (purged errors)
[2025-10-12 04:32:46] 2025-10-12 08:32:13,954 | INFO     | overall cleanup function is called
[2025-10-12 04:32:46] 2025-10-12 08:32:14,962 | INFO     | --- collectZombieJob: --- 10, [32455]
[2025-10-12 04:32:46] 2025-10-12 08:32:14,963 | INFO     | zombie collector waiting for pid 32455
[2025-10-12 04:32:46] 2025-10-12 08:32:14,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 04:32:46] 2025-10-12 08:32:14,963 | INFO     | collected zombie processes
[2025-10-12 04:32:46] 2025-10-12 08:32:14,963 | INFO     | will attempt to kill all subprocesses of pid=32455
[2025-10-12 04:32:46] 2025-10-12 08:32:15,061 | INFO     | process IDs to be killed: [32455] (in reverse order)
[2025-10-12 04:32:46] 2025-10-12 08:32:15,113 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 04:32:46] 2025-10-12 08:32:15,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 04:32:46] 2025-10-12 08:32:15,117 | INFO     | did not find any defunct processes belonging to 32455
[2025-10-12 04:32:46] 2025-10-12 08:32:15,119 | INFO     | did not find any defunct processes belonging to 32455
[2025-10-12 04:32:46] 2025-10-12 08:32:15,119 | INFO     | ready for new job
[2025-10-12 04:32:46] 2025-10-12 08:32:15,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 04:32:46] 2025-10-12 08:32:15,121 | INFO     | ***************************************
[2025-10-12 04:32:46] 2025-10-12 08:32:15,121 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 04:32:46] 2025-10-12 08:32:15,121 | INFO     | ***************************************
[2025-10-12 04:32:46] 2025-10-12 08:32:15,121 | INFO     | 
[2025-10-12 04:32:46] 2025-10-12 08:32:15,122 | INFO     | architecture information:
[2025-10-12 04:32:46] 2025-10-12 08:32:15,122 | INFO     | executing command: cat /etc/os-release
[2025-10-12 04:32:46] 2025-10-12 08:32:15,137 | INFO     | cat /etc/os-release:
[2025-10-12 04:32:46] NAME="CentOS Linux"
[2025-10-12 04:32:46] VERSION="7 (Core)"
[2025-10-12 04:32:46] ID="centos"
[2025-10-12 04:32:46] ID_LIKE="rhel fedora"
[2025-10-12 04:32:46] VERSION_ID="7"
[2025-10-12 04:32:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 04:32:46] ANSI_COLOR="0;31"
[2025-10-12 04:32:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 04:32:46] HOME_URL="https://www.centos.org/"
[2025-10-12 04:32:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 04:32:46] 
[2025-10-12 04:32:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 04:32:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 04:32:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 04:32:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 04:32:46] 
[2025-10-12 04:32:46] 2025-10-12 08:32:15,138 | INFO     | ***************************************
[2025-10-12 04:32:46] 2025-10-12 08:32:15,641 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 04:32:46] 2025-10-12 08:32:15,656 | INFO     | sufficient remaining disk space (29354885120 B)
[2025-10-12 04:32:46] 2025-10-12 08:32:15,656 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 04:32:46] 2025-10-12 08:32:15,657 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 04:32:46] 2025-10-12 08:32:15,657 | INFO     | update_server=False
[2025-10-12 04:32:46] 2025-10-12 08:32:15,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 04:32:46] 2025-10-12 08:32:15,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:32:46] 2025-10-12 08:32:15,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:32:46] 2025-10-12 08:32:15,965 | INFO     | aborting loop
[2025-10-12 04:32:46] 2025-10-12 08:32:16,011 | INFO     | all data control threads have been joined
[2025-10-12 04:32:46] 2025-10-12 08:32:16,377 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 04:32:46] 2025-10-12 08:32:16,495 | INFO     | all payload control threads have been joined
[2025-10-12 04:32:46] 2025-10-12 08:32:16,663 | INFO     | [job] retrieve thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:16,663 | INFO     | [job] queue monitor thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:16,709 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:16,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:16,963 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:16,970 | INFO     | [job] job monitor thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:17,017 | INFO     | [data] control thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:17,043 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:17,193 | INFO     | all job control threads have been joined
[2025-10-12 04:32:46] 2025-10-12 08:32:17,310 | INFO     | [data] copytool_in thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:17,500 | INFO     | [payload] control thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:17,520 | INFO     | [payload] failed_post thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:18,116 | INFO     | [payload] validate_post thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:18,133 | INFO     | [job] validate thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:18,199 | INFO     | [job] control thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:18,382 | INFO     | [data] copytool_out thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:18,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 04:32:46] 2025-10-12 08:32:22,965 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 04:32:46] 2025-10-12 08:32:27,584 | INFO     | [monitor] cgroup control has ended
[2025-10-12 04:32:46] 2025-10-12 08:32:28,771 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041000380224)>', '<ExcThread(monitor, started 140040252401408)>']
[2025-10-12 04:32:46] 2025-10-12 08:32:33,792 | INFO     | all workflow threads have been joined
[2025-10-12 04:32:46] 2025-10-12 08:32:33,792 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 04:32:46] 2025-10-12 08:32:33,799 | INFO     | traces error code: 0
[2025-10-12 04:32:46] 2025-10-12 08:32:33,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 04:32:46] 2025-10-12 08:32:45,994 | INFO     | PID=26082 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 04:32:46] 2025-10-12 08:32:45,994 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 04:32:46] 2025-10-12 08:32:45,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 04:32:46] 2025-10-12 08:32:45,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 04:32:46] 2025-10-12 08:32:45,995 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 04:32:46] 2025-10-12 08:32:45,995 | INFO     | [monitor] control thread has ended
[2025-10-12 04:32:46] 2025-10-12 08:32:46,093 [wrapper] ==== pilot stdout END ====
[2025-10-12 04:32:46] 2025-10-12 08:32:46,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 04:32:46] 2025-10-12 08:32:46,101 [wrapper] pilotpid: 26082
[2025-10-12 04:32:46] 2025-10-12 08:32:46,105 [wrapper] Pilot exit status: 0
[2025-10-12 04:32:46] 2025-10-12 08:32:46,121 [wrapper] pandaids: 6839242538
[2025-10-12 04:32:46] 2025-10-12 08:32:46,160 [wrapper] cleanup supervisor_pilot  7668 26083
[2025-10-12 04:32:46] 2025-10-12 08:32:46,164 [wrapper] Test setup, not cleaning
[2025-10-12 04:32:46] 2025-10-12 08:32:46,168 [wrapper] apfmon messages muted
[2025-10-12 04:32:46] 2025-10-12 08:32:46,172 [wrapper] ==== wrapper stdout END ====
[2025-10-12 04:32:46] 2025-10-12 08:32:46,176 [wrapper] ==== wrapper stderr END ====
[2025-10-12 04:32:46]  *** Error codes and diagnostics ***
[2025-10-12 04:32:46]     "exeErrorCode": 0,
[2025-10-12 04:32:46]     "exeErrorDiag": "",
[2025-10-12 04:32:46]     "pilotErrorCode": 0,
[2025-10-12 04:32:46]     "pilotErrorDiag": "",
[2025-10-12 04:32:46]  *** Listing of results directory ***
[2025-10-12 04:32:46] total 420780
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 21:53 pilot3.tar.gz
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 22:02 queuedata.json
[2025-10-12 04:32:46] -rwx------ 1 boincer umatlas     36292 Oct 11 22:02 runpilot2-wrapper.sh
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas       100 Oct 12 03:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 04:32:46] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 03:15 run_atlas
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas       105 Oct 12 03:15 job.xml
[2025-10-12 04:32:46] -rw-r--r-- 2 boincer umatlas 221964454 Oct 12 03:15 EVNT.46676267._003173.pool.root.1
[2025-10-12 04:32:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 03:15 start_atlas.sh
[2025-10-12 04:32:46] drwxrwx--x 2 boincer umatlas      4096 Oct 12 03:15 shared
[2025-10-12 04:32:46] -rw-r--r-- 2 boincer umatlas    569675 Oct 12 03:15 input.tar.gz
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas         0 Oct 12 03:15 boinc_lockfile
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 03:15 pandaJob.out
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas    975520 Oct 12 03:15 agis_schedconf.cvmfs.json
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas   1560580 Oct 12 03:15 agis_ddmendpoints.agis.ALL.json
[2025-10-12 04:32:46] drwx------ 5 boincer umatlas      4096 Oct 12 03:15 pilot3
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 04:30 init_data.xml
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas 202938076 Oct 12 04:31 HITS.46676269._069073.pool.root.1
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas       530 Oct 12 04:32 boinc_task_state.xml
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas      1050 Oct 12 04:32 memory_monitor_summary.json
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas    371773 Oct 12 04:32 log.46676269._069073.job.log.tgz.1
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas      7853 Oct 12 04:32 heartbeat.json
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 04:32 boinc_mmap_file
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas        27 Oct 12 04:32 wrapper_checkpoint.txt
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas        95 Oct 12 04:32 pilot_heartbeat.json
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas       745 Oct 12 04:32 pilotlog.txt
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas    668422 Oct 12 04:32 log.46676269._069073.job.log.1
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas       357 Oct 12 04:32 output.list
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas       620 Oct 12 04:32 runtime_log
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas   1054720 Oct 12 04:32 result.tar.gz
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 04:32 runtime_log.err
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas       659 Oct 12 04:32 4AzNDmJb0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmB0SMDmUuDPrm.diag
[2025-10-12 04:32:46] -rw-r--r-- 1 boincer umatlas     21641 Oct 12 04:32 stderr.txt
[2025-10-12 04:32:46] HITS file was successfully produced:
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas 202938076 Oct 12 04:31 shared/HITS.pool.root.1
[2025-10-12 04:32:46]  *** Contents of shared directory: ***
[2025-10-12 04:32:46] total 416560
[2025-10-12 04:32:46] -rw-r--r-- 2 boincer umatlas 221964454 Oct 12 03:15 ATLAS.root_0
[2025-10-12 04:32:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 03:15 start_atlas.sh
[2025-10-12 04:32:46] -rw-r--r-- 2 boincer umatlas    569675 Oct 12 03:15 input.tar.gz
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas 202938076 Oct 12 04:31 HITS.pool.root.1
[2025-10-12 04:32:46] -rw------- 1 boincer umatlas   1054720 Oct 12 04:32 result.tar.gz
04:32:48 (22398): run_atlas exited; CPU time 48460.913361
04:32:48 (22398): called boinc_finish(0)

</stderr_txt>
]]>

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