Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:12:45 (1480939): wrapper (7.7.26015): starting
03:12:45 (1480939): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 03:12:45] Arguments: --nthreads 12
[2025-10-12 03:12:45] Threads: 12
[2025-10-12 03:12:45] Checking for CVMFS
[2025-10-12 03:12:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:12:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:12:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:12:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:12:45] 2.13.2.0 3683012 12472 152072 151611 3 196 36957463 40960001 9000 16776704 0 139989453 99.854 55059006 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 03:12:45] CVMFS is ok
[2025-10-12 03:12:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:12:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 03:12:45] Further information can be found at the LHC@home message board.
[2025-10-12 03:12:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:12:45] Checking for apptainer binary...
[2025-10-12 03:12:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:12:45] Running /usr/bin/apptainer --version
[2025-10-12 03:12:45] apptainer version 1.4.3-1.el9
[2025-10-12 03:12:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:12:45] c8-7-4.aglt2.org
[2025-10-12 03:12:45] apptainer works
[2025-10-12 03:12:45] Set ATHENA_PROC_NUMBER=12
[2025-10-12 03:12:45] Set ATHENA_CORE_NUMBER=12
[2025-10-12 03:12:45] Starting ATLAS job with PandaID=6838632478
[2025-10-12 03:12:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:47:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:47:03]  protocol_id=None
[2025-10-12 03:47:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 03:47:03]  replicas=None
[2025-10-12 03:47:03]  scope=mc23_13p6TeV
[2025-10-12 03:47:03]  status=None
[2025-10-12 03:47:03]  status_code=0
[2025-10-12 03:47:03]  storage_token=
[2025-10-12 03:47:03]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-6838632478/log.46676269._060988.job.log.tgz.1
[2025-10-12 03:47:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/00/log.46676269._060988.job.log.tgz.1
[2025-10-12 03:47:03]  workdir=None
[2025-10-12 03:47:03] ]
[2025-10-12 03:47:03] 2025-10-12 07:46:25,345 | INFO     | transferring file log.46676269._060988.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6838632478/log.46676269._060988.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 03:47:03] 2025-10-12 07:46:25,346 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6838632478/log.46676269._060988.job.log.tgz.1 /tmp/boinchome/slots/9/log.46676269._060988.job
[2025-10-12 03:47:03] 2025-10-12 07:46:25,356 | INFO     | adding to output.list: log.46676269._060988.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/00/log.46676269._060988.job.log.tg
[2025-10-12 03:47:03] 2025-10-12 07:46:25,357 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 03:47:03] 2025-10-12 07:46:25,357 | INFO     | summary of transferred files:
[2025-10-12 03:47:03] 2025-10-12 07:46:25,357 | INFO     |  -- lfn=log.46676269._060988.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 03:47:03] 2025-10-12 07:46:25,357 | INFO     | stage-out finished correctly
[2025-10-12 03:47:03] 2025-10-12 07:46:25,404 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 03:47:03] 2025-10-12 07:46:25,772 | INFO     | time since job start (2012s) is within the limit (172800.0s)
[2025-10-12 03:47:03] 2025-10-12 07:46:26,027 | INFO     | monitor loop #151: job 0:6838632478 is in state 'finished'
[2025-10-12 03:47:03] 2025-10-12 07:46:26,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:47:03] 2025-10-12 07:46:27,286 | INFO     | job 6838632478 has state=finished
[2025-10-12 03:47:03] 2025-10-12 07:46:27,287 | INFO     | preparing for final server update for job 6838632478 in state='finished'
[2025-10-12 03:47:03] 2025-10-12 07:46:27,327 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 03:47:03] 2025-10-12 07:46:27,327 | INFO     | this job has now completed (state=finished)
[2025-10-12 03:47:03] 2025-10-12 07:46:27,327 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 03:47:03] 2025-10-12 07:46:27,328 | INFO     | log transfer has been attempted: DONE
[2025-10-12 03:47:03] 2025-10-12 07:46:27,328 | INFO     | job 6838632478 has finished - writing final server update
[2025-10-12 03:47:03] 2025-10-12 07:46:27,328 | INFO     | total number of processed events: 400 (read)
[2025-10-12 03:47:03] 2025-10-12 07:46:27,328 | INFO     | executing command: lscpu
[2025-10-12 03:47:03] 2025-10-12 07:46:27,391 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 03:47:03] 2025-10-12 07:46:27,778 | INFO     | time since job start (2014s) is within the limit (172800.0s)
[2025-10-12 03:47:03] 2025-10-12 07:46:28,531 | INFO     | monitor loop #152: job 0:6838632478 is in state 'finished'
[2025-10-12 03:47:03] 2025-10-12 07:46:28,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:47:03] 2025-10-12 07:46:29,785 | INFO     | time since job start (2016s) is within the limit (172800.0s)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,513 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 03:47:03] 2025-10-12 07:46:30,519 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3624.006187499995
[2025-10-12 03:47:03] 2025-10-12 07:46:30,533 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6838632478/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,534 | INFO     | extracted standard info from prmon json
[2025-10-12 03:47:03] 2025-10-12 07:46:30,534 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:47:03] 2025-10-12 07:46:30,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:47:03] 2025-10-12 07:46:30,534 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:47:03] 2025-10-12 07:46:30,535 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | sum of square deviations: 5441962.5
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | sum of deviations: 95297158.49999999
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | mean x: 1760254264.5
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | mean y: 2398999.423076923
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | -- intersect: -30822368654.590965
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | intersect: -30822368654.590965
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | chi2: 0.0009590626659595801
[2025-10-12 03:47:03] 2025-10-12 07:46:30,536 | INFO     | -- intersect: -30822368654.590965
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | current memory leak: 17.51 B/s (using 26 data points, chi2=0.00)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | could have reported an average CPU frequency of 3571 MHz (5 samples)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | ..............................
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . Timing measurements:
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . get job = 0 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . initial setup = 2 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . payload setup = 4 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . stage-in = 0 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . payload execution = 1986 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . stage-out = 0 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | . log creation = 0 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,537 | INFO     | ..............................
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | 
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | job summary report
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | --------------------------------------------------
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | PanDA job id: 6838632478
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | task id: 46676269
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | errors: (none)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | pilot state: finished 
[2025-10-12 03:47:03] 2025-10-12 07:46:30,671 | INFO     | transexitcode: 0
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | exeerrorcode: 0
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | exeerrordiag: 
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | exitcode: 0
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | exitmsg: OK
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | cpuconsumptiontime: 20309 s
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | nevents: 400
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | neventsw: 0
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | pid: 1491114
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | pgrp: 1491114
[2025-10-12 03:47:03] 2025-10-12 07:46:30,672 | INFO     | corecount: 12
[2025-10-12 03:47:03] 2025-10-12 07:46:30,673 | INFO     | event service: False
[2025-10-12 03:47:03] 2025-10-12 07:46:30,673 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1994: 2374152, 1995: 2374151, 1996: 2383205, 1997: 2383389, 2002: 2383615}
[2025-10-12 03:47:03] 2025-10-12 07:46:30,673 | INFO     | --------------------------------------------------
[2025-10-12 03:47:03] 2025-10-12 07:46:30,673 | INFO     | 
[2025-10-12 03:47:03] 2025-10-12 07:46:30,673 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-10-12 03:47:03] 2025-10-12 07:46:30,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | job 6838632478 has completed (purged errors)
[2025-10-12 03:47:03] 2025-10-12 07:46:30,687 | INFO     | overall cleanup function is called
[2025-10-12 03:47:03] 2025-10-12 07:46:31,694 | INFO     | --- collectZombieJob: --- 10, [1491114]
[2025-10-12 03:47:03] 2025-10-12 07:46:31,694 | INFO     | zombie collector waiting for pid 1491114
[2025-10-12 03:47:03] 2025-10-12 07:46:31,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:47:03] 2025-10-12 07:46:31,694 | INFO     | collected zombie processes
[2025-10-12 03:47:03] 2025-10-12 07:46:31,694 | INFO     | will attempt to kill all subprocesses of pid=1491114
[2025-10-12 03:47:03] 2025-10-12 07:46:32,038 | INFO     | process IDs to be killed: [1491114] (in reverse order)
[2025-10-12 03:47:03] 2025-10-12 07:46:32,159 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:47:03] 2025-10-12 07:46:32,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:47:03] 2025-10-12 07:46:32,176 | INFO     | did not find any defunct processes belonging to 1491114
[2025-10-12 03:47:03] 2025-10-12 07:46:32,190 | INFO     | did not find any defunct processes belonging to 1491114
[2025-10-12 03:47:03] 2025-10-12 07:46:32,190 | INFO     | ready for new job
[2025-10-12 03:47:03] 2025-10-12 07:46:32,191 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:47:03] 2025-10-12 07:46:32,192 | INFO     | ***************************************
[2025-10-12 03:47:03] 2025-10-12 07:46:32,192 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:47:03] 2025-10-12 07:46:32,192 | INFO     | ***************************************
[2025-10-12 03:47:03] 2025-10-12 07:46:32,192 | INFO     | 
[2025-10-12 03:47:03] 2025-10-12 07:46:32,209 | INFO     | architecture information:
[2025-10-12 03:47:03] 2025-10-12 07:46:32,209 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:47:03] 2025-10-12 07:46:32,221 | INFO     | cat /etc/os-release:
[2025-10-12 03:47:03] NAME="CentOS Linux"
[2025-10-12 03:47:03] VERSION="7 (Core)"
[2025-10-12 03:47:03] ID="centos"
[2025-10-12 03:47:03] ID_LIKE="rhel fedora"
[2025-10-12 03:47:03] VERSION_ID="7"
[2025-10-12 03:47:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:47:03] ANSI_COLOR="0;31"
[2025-10-12 03:47:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:47:03] HOME_URL="https://www.centos.org/"
[2025-10-12 03:47:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:47:03] 
[2025-10-12 03:47:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:47:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:47:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:47:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:47:03] 
[2025-10-12 03:47:03] 2025-10-12 07:46:32,222 | INFO     | ***************************************
[2025-10-12 03:47:03] 2025-10-12 07:46:32,725 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-10-12 03:47:03] 2025-10-12 07:46:32,738 | INFO     | sufficient remaining disk space (166377553920 B)
[2025-10-12 03:47:03] 2025-10-12 07:46:32,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:47:03] 2025-10-12 07:46:32,739 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:47:03] 2025-10-12 07:46:32,739 | INFO     | update_server=False
[2025-10-12 03:47:03] 2025-10-12 07:46:32,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:47:03] 2025-10-12 07:46:32,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:47:03] 2025-10-12 07:46:32,739 | INFO     | aborting loop
[2025-10-12 03:47:03] 2025-10-12 07:46:33,319 | INFO     | all data control threads have been joined
[2025-10-12 03:47:03] 2025-10-12 07:46:33,412 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:47:03] 2025-10-12 07:46:33,741 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:33,745 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:33,895 | INFO     | all job control threads have been joined
[2025-10-12 03:47:03] 2025-10-12 07:46:33,976 | INFO     | all payload control threads have been joined
[2025-10-12 03:47:03] 2025-10-12 07:46:34,102 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,152 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,324 | INFO     | [data] control thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,701 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,800 | INFO     | [job] validate thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,900 | INFO     | [job] control thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,912 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,919 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:34,981 | INFO     | [payload] control thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:35,105 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:35,413 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:35,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:47:03] 2025-10-12 07:46:35,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:47:03] 2025-10-12 07:46:36,614 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:39,972 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:47:03] 2025-10-12 07:46:56,622 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:47:03] 2025-10-12 07:46:58,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140265123477312)>', '<ExcThread(monitor, started 140264354076416)>']
[2025-10-12 03:47:03] 2025-10-12 07:47:03,035 | INFO     | all workflow threads have been joined
[2025-10-12 03:47:03] 2025-10-12 07:47:03,036 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:47:03] 2025-10-12 07:47:03,036 | INFO     | traces error code: 0
[2025-10-12 03:47:03] 2025-10-12 07:47:03,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:47:03] 2025-10-12 07:47:03,246 | INFO     | PID=1484666 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:47:03] 2025-10-12 07:47:03,247 | INFO     | .. there are 12 such processes running
[2025-10-12 03:47:03] 2025-10-12 07:47:03,247 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:47:03] 2025-10-12 07:47:03,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:47:03] 2025-10-12 07:47:03,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:47:03] 2025-10-12 07:47:03,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:47:03] 2025-10-12 07:47:03,247 | INFO     | [monitor] control thread has ended
[2025-10-12 03:47:03] 2025-10-12 07:47:03,369 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:47:03] 2025-10-12 07:47:03,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:47:03] 2025-10-12 07:47:03,372 [wrapper] pilotpid: 1484666
[2025-10-12 03:47:03] 2025-10-12 07:47:03,374 [wrapper] Pilot exit status: 0
[2025-10-12 03:47:03] 2025-10-12 07:47:03,382 [wrapper] pandaids: 6838632478
[2025-10-12 03:47:03] 2025-10-12 07:47:03,454 [wrapper] cleanup supervisor_pilot 1666217 1484667
[2025-10-12 03:47:03] 2025-10-12 07:47:03,456 [wrapper] Test setup, not cleaning
[2025-10-12 03:47:03] 2025-10-12 07:47:03,458 [wrapper] apfmon messages muted
[2025-10-12 03:47:03] 2025-10-12 07:47:03,460 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:47:03] 2025-10-12 07:47:03,461 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:47:03]  *** Error codes and diagnostics ***
[2025-10-12 03:47:03]     "exeErrorCode": 0,
[2025-10-12 03:47:03]     "exeErrorDiag": "",
[2025-10-12 03:47:03]     "pilotErrorCode": 0,
[2025-10-12 03:47:03]     "pilotErrorDiag": "",
[2025-10-12 03:47:03]  *** Listing of results directory ***
[2025-10-12 03:47:03] total 411032
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 12:20 pilot3.tar.gz
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 12:24 queuedata.json
[2025-10-12 03:47:03] -rwx------. 1 boincer umatlas     36292 Oct 11 12:25 runpilot2-wrapper.sh
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas       100 Oct 12 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:47:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 03:12 run_atlas
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas       105 Oct 12 03:12 job.xml
[2025-10-12 03:47:03] -rw-r--r--. 2 boincer umatlas 219413511 Oct 12 03:12 EVNT.46676267._002449.pool.root.1
[2025-10-12 03:47:03] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 03:12 input.tar.gz
[2025-10-12 03:47:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 03:12 start_atlas.sh
[2025-10-12 03:47:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 03:12 shared
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas         0 Oct 12 03:12 boinc_lockfile
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 03:12 pandaJob.out
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas    975528 Oct 12 03:12 agis_schedconf.cvmfs.json
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas   1560580 Oct 12 03:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:47:03] drwx------. 5 boincer umatlas      4096 Oct 12 03:12 pilot3
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 03:37 init_data.xml
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas 196226072 Oct 12 03:46 HITS.46676269._060988.pool.root.1
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas       529 Oct 12 03:46 boinc_task_state.xml
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas      1028 Oct 12 03:46 memory_monitor_summary.json
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas    351077 Oct 12 03:46 log.46676269._060988.job.log.tgz.1
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas      7772 Oct 12 03:46 heartbeat.json
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 03:47 boinc_mmap_file
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas        95 Oct 12 03:47 pilot_heartbeat.json
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas       823 Oct 12 03:47 pilotlog.txt
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas        27 Oct 12 03:47 wrapper_checkpoint.txt
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas    328409 Oct 12 03:47 log.46676269._060988.job.log.1
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas       357 Oct 12 03:47 output.list
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas       620 Oct 12 03:47 runtime_log
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas    696320 Oct 12 03:47 result.tar.gz
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 03:47 runtime_log.err
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas       649 Oct 12 03:47 a0nLDmOarR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwwgNDmrvY0Nn.diag
[2025-10-12 03:47:03] -rw-r--r--. 1 boincer umatlas     21813 Oct 12 03:47 stderr.txt
[2025-10-12 03:47:03] HITS file was successfully produced:
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas 196226072 Oct 12 03:46 shared/HITS.pool.root.1
[2025-10-12 03:47:03]  *** Contents of shared directory: ***
[2025-10-12 03:47:03] total 407164
[2025-10-12 03:47:03] -rw-r--r--. 2 boincer umatlas 219413511 Oct 12 03:12 ATLAS.root_0
[2025-10-12 03:47:03] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 03:12 input.tar.gz
[2025-10-12 03:47:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 03:12 start_atlas.sh
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas 196226072 Oct 12 03:46 HITS.pool.root.1
[2025-10-12 03:47:03] -rw-------. 1 boincer umatlas    696320 Oct 12 03:47 result.tar.gz
03:47:05 (1480939): run_atlas exited; CPU time 20349.805799
03:47:05 (1480939): called boinc_finish(0)

</stderr_txt>
]]>

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