Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:49:23 (3483062): wrapper (7.7.26015): starting
17:49:23 (3483062): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 17:49:23] Arguments: --nthreads 4
[2025-10-13 17:49:23] Threads: 4
[2025-10-13 17:49:23] Checking for CVMFS
[2025-10-13 17:49:23] No cvmfs_config command found, will try listing directly
[2025-10-13 17:49:23] CVMFS is ok
[2025-10-13 17:49:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:49:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:49:23] Further information can be found at the LHC@home message board.
[2025-10-13 17:49:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:49:23] Checking for apptainer binary...
[2025-10-13 17:49:23] which: no apptainer in ((null))
[2025-10-13 17:49:23] apptainer is not installed, using version from CVMFS
[2025-10-13 17:49:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:49:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-10-13 17:49:23] apptainer works
[2025-10-13 17:49:23] Set ATHENA_PROC_NUMBER=4
[2025-10-13 17:49:23] Set ATHENA_CORE_NUMBER=4
[2025-10-13 17:49:23] Starting ATLAS job with PandaID=6839242275
[2025-10-13 17:49:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:02:31 (3730127): wrapper (7.7.26015): starting
19:02:31 (3730127): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 19:02:31] Arguments: --nthreads 4
[2025-10-13 19:02:31] Threads: 4
[2025-10-13 19:02:31] This job has been restarted, cleaning up previous attempt
[2025-10-13 19:02:31] Checking for CVMFS
[2025-10-13 19:02:31] No cvmfs_config command found, will try listing directly
[2025-10-13 19:02:31] CVMFS is ok
[2025-10-13 19:02:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:02:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:02:31] Further information can be found at the LHC@home message board.
[2025-10-13 19:02:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:02:31] Checking for apptainer binary...
[2025-10-13 19:02:31] which: no apptainer in ((null))
[2025-10-13 19:02:31] apptainer is not installed, using version from CVMFS
[2025-10-13 19:02:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:02:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-10-13 19:02:31] apptainer works
[2025-10-13 19:02:31] Set ATHENA_PROC_NUMBER=4
[2025-10-13 19:02:31] Set ATHENA_CORE_NUMBER=4
[2025-10-13 19:02:31] Starting ATLAS job with PandaID=6839242275
[2025-10-13 19:02:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:47:10]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:47:10] 2025-10-13 19:43:49,466 | INFO     | time since job start (9666s) is within the limit (172800.0s)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,254 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 21:47:10] 2025-10-13 19:43:50,275 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2707.5300781249994
[2025-10-13 21:47:10] 2025-10-13 19:43:50,300 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6839242275/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,301 | INFO     | extracted standard info from prmon json
[2025-10-13 21:47:10] 2025-10-13 19:43:50,301 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 21:47:10] 2025-10-13 19:43:50,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 21:47:10] 2025-10-13 19:43:50,302 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 21:47:10] 2025-10-13 19:43:50,302 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 21:47:10] 2025-10-13 19:43:50,305 | INFO     | fitting pss+swap vs Time
[2025-10-13 21:47:10] 2025-10-13 19:43:50,305 | INFO     | sum of square deviations: 1223016419.5
[2025-10-13 21:47:10] 2025-10-13 19:43:50,306 | INFO     | sum of deviations: 21190812295.499996
[2025-10-13 21:47:10] 2025-10-13 19:43:50,307 | INFO     | mean x: 1760379783.5
[2025-10-13 21:47:10] 2025-10-13 19:43:50,307 | INFO     | mean y: 2304491.082278481
[2025-10-13 21:47:10] 2025-10-13 19:43:50,307 | INFO     | -- intersect: -30499230047.7526
[2025-10-13 21:47:10] 2025-10-13 19:43:50,307 | INFO     | intersect: -30499230047.7526
[2025-10-13 21:47:10] 2025-10-13 19:43:50,307 | INFO     | chi2: 1.1549706592901534
[2025-10-13 21:47:10] 2025-10-13 19:43:50,308 | INFO     | sum of square deviations: 1110539892.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,308 | INFO     | sum of deviations: 20449230873.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,308 | INFO     | mean x: 1760379631.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | mean y: 2303485.2352941176
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | -- intersect: -32412929643.954765
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | intersect: -32412929643.954765
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | chi2: 1.1555016624563879
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | current chi2=1.1555016624563879 (change=-0.045975468031439023 %)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | right removable region: 152
[2025-10-13 21:47:10] 2025-10-13 19:43:50,309 | INFO     | sum of square deviations: 1110539892.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,310 | INFO     | sum of deviations: 3579880465.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,310 | INFO     | mean x: 1760379936.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,311 | INFO     | mean y: 2327963.2875816994
[2025-10-13 21:47:10] 2025-10-13 19:43:50,311 | INFO     | -- intersect: -5672344139.229156
[2025-10-13 21:47:10] 2025-10-13 19:43:50,311 | INFO     | intersect: -5672344139.229156
[2025-10-13 21:47:10] 2025-10-13 19:43:50,311 | INFO     | chi2: 0.0009886376897232107
[2025-10-13 21:47:10] 2025-10-13 19:43:50,311 | INFO     | current chi2=0.0009886376897232107 (change=99.91440148875029 %)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,311 | INFO     | sum of square deviations: 1005179777.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,312 | INFO     | sum of deviations: 3406292337.999999
[2025-10-13 21:47:10] 2025-10-13 19:43:50,312 | INFO     | mean x: 1760380088.5
[2025-10-13 21:47:10] 2025-10-13 19:43:50,312 | INFO     | mean y: 2328206.7702702703
[2025-10-13 21:47:10] 2025-10-13 19:43:50,312 | INFO     | -- intersect: -5963141199.430596
[2025-10-13 21:47:10] 2025-10-13 19:43:50,312 | INFO     | intersect: -5963141199.430596
[2025-10-13 21:47:10] 2025-10-13 19:43:50,313 | INFO     | chi2: 0.0007832664822239024
[2025-10-13 21:47:10] 2025-10-13 19:43:50,313 | INFO     | current chi2=0.0007832664822239024 (change=20.773151745489912 %)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,313 | INFO     | left removable region: 20
[2025-10-13 21:47:10] 2025-10-13 19:43:50,313 | INFO     | sum of square deviations: 713140813.0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,314 | INFO     | sum of deviations: 2323647105.5000005
[2025-10-13 21:47:10] 2025-10-13 19:43:50,314 | INFO     | mean x: 1760380210.5
[2025-10-13 21:47:10] 2025-10-13 19:43:50,314 | INFO     | mean y: 2329467.3257575757
[2025-10-13 21:47:10] 2025-10-13 19:43:50,314 | INFO     | -- intersect: -5733567716.149291
[2025-10-13 21:47:10] 2025-10-13 19:43:50,315 | INFO     | intersect: -5733567716.149291
[2025-10-13 21:47:10] 2025-10-13 19:43:50,315 | INFO     | chi2: 0.00036732622004528637
[2025-10-13 21:47:10] 2025-10-13 19:43:50,315 | INFO     | -- intersect: -5733567716.149291
[2025-10-13 21:47:10] 2025-10-13 19:43:50,315 | INFO     | current memory leak: 3.26 B/s (using 132 data points, chi2=0.00)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,315 | INFO     | could have reported an average CPU frequency of 2712 MHz (9 samples)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | ..............................
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . Timing measurements:
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . get job = 0 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . initial setup = 0 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . payload setup = 7 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . stage-in = 0 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . payload execution = 9625 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . stage-out = 1 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | . log creation = 0 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,316 | INFO     | ..............................
[2025-10-13 21:47:10] 2025-10-13 19:43:50,416 | INFO     | 
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | job summary report
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | --------------------------------------------------
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | PanDA job id: 6839242275
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | task id: 46676269
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | errors: (none)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | pilot state: finished 
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | transexitcode: 0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,417 | INFO     | exeerrorcode: 0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | exeerrordiag: 
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | exitcode: 0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | exitmsg: OK
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | cpuconsumptiontime: 36747 s
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | nevents: 400
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | neventsw: 0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | pid: 3741816
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | pgrp: 3741816
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | corecount: 4
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | event service: False
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | sizes: {0: 2348869, 7: 2349131, 11: 2349159, 9637: 2378099, 9640: 2387177, 9650: 2387379}
[2025-10-13 21:47:10] 2025-10-13 19:43:50,418 | INFO     | --------------------------------------------------
[2025-10-13 21:47:10] 2025-10-13 19:43:50,419 | INFO     | 
[2025-10-13 21:47:10] 2025-10-13 19:43:50,419 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-10-13 21:47:10] 2025-10-13 19:43:50,450 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,452 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:47:10] 2025-10-13 19:43:50,453 | INFO     | job 6839242275 has completed (purged errors)
[2025-10-13 21:47:10] 2025-10-13 19:43:50,453 | INFO     | overall cleanup function is called
[2025-10-13 21:47:10] 2025-10-13 19:43:51,462 | INFO     | --- collectZombieJob: --- 10, [3741816]
[2025-10-13 21:47:10] 2025-10-13 19:43:51,463 | INFO     | zombie collector waiting for pid 3741816
[2025-10-13 21:47:10] 2025-10-13 19:43:51,463 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:47:10] 2025-10-13 19:43:51,463 | INFO     | collected zombie processes
[2025-10-13 21:47:10] 2025-10-13 19:43:51,463 | INFO     | will attempt to kill all subprocesses of pid=3741816
[2025-10-13 21:47:10] 2025-10-13 19:43:52,185 | INFO     | process IDs to be killed: [3741816] (in reverse order)
[2025-10-13 21:47:10] 2025-10-13 19:43:52,421 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:47:10] 2025-10-13 19:43:52,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:47:10] 2025-10-13 19:43:52,450 | INFO     | did not find any defunct processes belonging to 3741816
[2025-10-13 21:47:10] 2025-10-13 19:43:52,477 | INFO     | did not find any defunct processes belonging to 3741816
[2025-10-13 21:47:10] 2025-10-13 19:43:52,478 | INFO     | ready for new job
[2025-10-13 21:47:10] 2025-10-13 19:43:52,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:47:10] 2025-10-13 19:43:52,480 | INFO     | ***************************************
[2025-10-13 21:47:10] 2025-10-13 19:43:52,480 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:47:10] 2025-10-13 19:43:52,480 | INFO     | ***************************************
[2025-10-13 21:47:10] 2025-10-13 19:43:52,480 | INFO     | 
[2025-10-13 21:47:10] 2025-10-13 19:43:52,488 | INFO     | architecture information:
[2025-10-13 21:47:10] 2025-10-13 19:43:52,489 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:47:10] 2025-10-13 19:43:52,514 | INFO     | cat /etc/os-release:
[2025-10-13 21:47:10] NAME="CentOS Linux"
[2025-10-13 21:47:10] VERSION="7 (Core)"
[2025-10-13 21:47:10] ID="centos"
[2025-10-13 21:47:10] ID_LIKE="rhel fedora"
[2025-10-13 21:47:10] VERSION_ID="7"
[2025-10-13 21:47:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:47:10] ANSI_COLOR="0;31"
[2025-10-13 21:47:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:47:10] HOME_URL="https://www.centos.org/"
[2025-10-13 21:47:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:47:10] 
[2025-10-13 21:47:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:47:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:47:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:47:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:47:10] 
[2025-10-13 21:47:10] 2025-10-13 19:43:52,514 | INFO     | ***************************************
[2025-10-13 21:47:10] 2025-10-13 19:43:53,017 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-10-13 21:47:10] 2025-10-13 19:43:53,044 | INFO     | sufficient remaining disk space (3346122407936 B)
[2025-10-13 21:47:10] 2025-10-13 19:43:53,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:47:10] 2025-10-13 19:43:53,044 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:47:10] 2025-10-13 19:43:53,044 | INFO     | update_server=False
[2025-10-13 21:47:10] 2025-10-13 19:43:53,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:47:10] 2025-10-13 19:43:53,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:47:10] 2025-10-13 19:43:53,045 | INFO     | aborting loop
[2025-10-13 21:47:10] 2025-10-13 19:43:53,466 | INFO     | all payload control threads have been joined
[2025-10-13 21:47:10] 2025-10-13 19:43:53,468 | INFO     | all data control threads have been joined
[2025-10-13 21:47:10] 2025-10-13 19:43:53,676 | INFO     | all job control threads have been joined
[2025-10-13 21:47:10] 2025-10-13 19:43:53,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:47:10] 2025-10-13 19:43:54,050 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:54,051 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:54,200 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:54,470 | INFO     | [payload] control thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:54,470 | INFO     | [data] control thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:54,681 | INFO     | [job] control thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:54,830 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,109 | INFO     | [job] validate thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,230 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,261 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,267 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:47:10] 2025-10-13 19:43:55,479 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,864 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:55,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:47:10] 2025-10-13 19:43:56,433 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:43:58,025 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:47:10] 2025-10-13 19:43:59,963 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:44:03,556 | INFO     | job.realtimelogging is not enabled
[2025-10-13 21:47:10] 2025-10-13 19:44:04,561 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:47:10] 2025-10-13 19:44:04,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23271859799872)>', '<ExcThread(monitor, started 23270736787200)>']
[2025-10-13 21:47:10] 2025-10-13 19:44:09,943 | INFO     | all workflow threads have been joined
[2025-10-13 21:47:10] 2025-10-13 19:44:09,943 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:47:10] 2025-10-13 19:44:09,943 | INFO     | traces error code: 0
[2025-10-13 21:47:10] 2025-10-13 19:44:09,944 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:47:10] 2025-10-13 19:44:23,450 | INFO     | PID=3734376 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:47:10] 2025-10-13 19:44:23,450 | INFO     | .. there are 5 such processes running
[2025-10-13 21:47:10] 2025-10-13 19:44:23,451 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:47:10] 2025-10-13 19:44:23,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:47:10] 2025-10-13 19:44:23,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:47:10] 2025-10-13 19:44:23,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:47:10] 2025-10-13 19:44:23,451 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 21:47:10] 2025-10-13 19:44:23,451 | INFO     | [monitor] control thread has ended
[2025-10-13 21:47:10] 2025-10-13 19:44:23,651 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:47:10] 2025-10-13 19:44:23,657 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:47:10] 2025-10-13 19:44:23,661 [wrapper] pilotpid: 3734376
[2025-10-13 21:47:10] 2025-10-13 19:44:23,665 [wrapper] Pilot exit status: 0
[2025-10-13 21:47:10] 2025-10-13 19:44:23,679 [wrapper] pandaids: 6839242275 6839242275
[2025-10-13 21:47:10] 2025-10-13 19:44:23,843 [wrapper] cleanup supervisor_pilot   18815 3734377
[2025-10-13 21:47:10] 2025-10-13 19:44:23,846 [wrapper] Test setup, not cleaning
[2025-10-13 21:47:10] 2025-10-13 19:44:23,850 [wrapper] apfmon messages muted
[2025-10-13 21:47:10] 2025-10-13 19:44:23,854 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:47:10] 2025-10-13 19:44:23,857 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:47:10]  *** Error codes and diagnostics ***
[2025-10-13 21:47:10]     "exeErrorCode": 0,
[2025-10-13 21:47:10]     "exeErrorDiag": "",
[2025-10-13 21:47:10]     "pilotErrorCode": 0,
[2025-10-13 21:47:10]     "pilotErrorDiag": "",
[2025-10-13 21:47:10]  *** Listing of results directory ***
[2025-10-13 21:47:10] total 639256
[2025-10-13 21:47:10] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:26 pilot3.tar.gz
[2025-10-13 21:47:10] -rwx------ 1 boinc boinc     36292 Oct 12 03:47 runpilot2-wrapper.sh
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:47 queuedata.json
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:47:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:49 run_atlas
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:49 job.xml
[2025-10-13 21:47:10] -rw-r--r-- 3 boinc boinc 223445868 Oct 13 17:49 EVNT.46676267._003164.pool.root.1
[2025-10-13 21:47:10] -rw-r--r-- 3 boinc boinc 223445868 Oct 13 17:49 ATLAS.root_0
[2025-10-13 21:47:10] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:49 start_atlas.sh
[2025-10-13 21:47:10] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:49 shared
[2025-10-13 21:47:10] -rw-r--r-- 2 boinc boinc    569683 Oct 13 17:49 input.tar.gz
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:49 boinc_lockfile
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc      6692 Oct 13 19:02 init_data.xml
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:02 pandaJob.out
[2025-10-13 21:47:10] -rw------- 1 boinc boinc    972783 Oct 13 19:02 agis_schedconf.cvmfs.json
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:43 boinc_task_state.xml
[2025-10-13 21:47:10] -rw------- 1 boinc boinc 200396668 Oct 13 21:43 HITS.46676269._068919.pool.root.1
[2025-10-13 21:47:10] -rw------- 1 boinc boinc      1026 Oct 13 21:43 memory_monitor_summary.json
[2025-10-13 21:47:10] -rw------- 1 boinc boinc        97 Oct 13 21:43 pilot_heartbeat.json
[2025-10-13 21:47:10] -rw------- 1 boinc boinc   1560580 Oct 13 21:43 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:47:10] -rw------- 1 boinc boinc    350846 Oct 13 21:43 log.46676269._068919.job.log.tgz.1
[2025-10-13 21:47:10] -rw------- 1 boinc boinc      7780 Oct 13 21:43 heartbeat.json
[2025-10-13 21:47:10] -rw------- 1 boinc boinc       892 Oct 13 21:44 pilotlog.txt
[2025-10-13 21:47:10] -rw------- 1 boinc boinc   1354107 Oct 13 21:44 log.46676269._068919.job.log.1
[2025-10-13 21:47:10] -rw------- 1 boinc boinc       357 Oct 13 21:44 output.list
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:44 runtime_log
[2025-10-13 21:47:10] -rw------- 1 boinc boinc   1720320 Oct 13 21:44 result.tar.gz
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc      9161 Oct 13 21:44 runtime_log.err
[2025-10-13 21:47:10] -rw------- 1 boinc boinc       789 Oct 13 21:44 qgxKDmCM0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpySMDmAKSNMo.diag
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc        26 Oct 13 21:47 wrapper_checkpoint.txt
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:47 boinc_mmap_file
[2025-10-13 21:47:10] -rw-r--r-- 1 boinc boinc     22763 Oct 13 21:47 stderr.txt
[2025-10-13 21:47:10] HITS file was successfully produced:
[2025-10-13 21:47:10] -rw------- 1 boinc boinc 200396668 Oct 13 21:43 shared/HITS.pool.root.1
[2025-10-13 21:47:10]  *** Contents of shared directory: ***
[2025-10-13 21:47:10] total 416176
[2025-10-13 21:47:10] -rw-r--r-- 3 boinc boinc 223445868 Oct 13 17:49 ATLAS.root_0
[2025-10-13 21:47:10] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:49 start_atlas.sh
[2025-10-13 21:47:10] -rw-r--r-- 2 boinc boinc    569683 Oct 13 17:49 input.tar.gz
[2025-10-13 21:47:10] -rw------- 1 boinc boinc 200396668 Oct 13 21:43 HITS.pool.root.1
[2025-10-13 21:47:10] -rw------- 1 boinc boinc   1720320 Oct 13 21:44 result.tar.gz
21:47:11 (3730127): run_atlas exited; CPU time 37395.719580
21:47:11 (3730127): called boinc_finish(0)

</stderr_txt>
]]>

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