Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:54:35 (2631496): wrapper (7.7.26015): starting
23:54:35 (2631496): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 23:54:35] Arguments: --nthreads 3
[2025-10-12 23:54:35] Threads: 3
[2025-10-12 23:54:35] Checking for CVMFS
[2025-10-12 23:54:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:54:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:54:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:54:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:54:36] 2.9.2.0 1182477 4993 83716 151638 2 57 3797048 36864001 0 130560 0 3816009 99.991 173265 937 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:54:36] CVMFS is ok
[2025-10-12 23:54:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:54:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:54:36] Further information can be found at the LHC@home message board.
[2025-10-12 23:54:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:54:36] Checking for apptainer binary...
[2025-10-12 23:54:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:54:36] Running /usr/bin/apptainer --version
[2025-10-12 23:54:36] apptainer version 1.4.1-1.1
[2025-10-12 23:54:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:54:36] thA332
[2025-10-12 23:54:36] apptainer works
[2025-10-12 23:54:36] Set ATHENA_PROC_NUMBER=3
[2025-10-12 23:54:36] Set ATHENA_CORE_NUMBER=3
[2025-10-12 23:54:36] Starting ATLAS job with PandaID=6838851773
[2025-10-12 23:54:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:22:16]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | job 6838851773 has completed (purged errors)
[2025-10-13 01:22:16] 2025-10-12 23:21:43,737 | INFO     | overall cleanup function is called
[2025-10-13 01:22:16] 2025-10-12 23:21:44,744 | INFO     | --- collectZombieJob: --- 10, [2641647]
[2025-10-13 01:22:16] 2025-10-12 23:21:44,744 | INFO     | zombie collector waiting for pid 2641647
[2025-10-13 01:22:16] 2025-10-12 23:21:44,744 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:22:16] 2025-10-12 23:21:44,744 | INFO     | collected zombie processes
[2025-10-13 01:22:16] 2025-10-12 23:21:44,744 | INFO     | will attempt to kill all subprocesses of pid=2641647
[2025-10-13 01:22:16] 2025-10-12 23:21:44,787 | INFO     | process IDs to be killed: [2641647] (in reverse order)
[2025-10-13 01:22:16] 2025-10-12 23:21:44,812 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:22:16] 2025-10-12 23:21:44,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:22:16] 2025-10-12 23:21:44,813 | INFO     | did not find any defunct processes belonging to 2641647
[2025-10-13 01:22:16] 2025-10-12 23:21:44,814 | INFO     | did not find any defunct processes belonging to 2641647
[2025-10-13 01:22:16] 2025-10-12 23:21:44,814 | INFO     | ready for new job
[2025-10-13 01:22:16] 2025-10-12 23:21:44,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:22:16] 2025-10-12 23:21:44,815 | INFO     | ***************************************
[2025-10-13 01:22:16] 2025-10-12 23:21:44,815 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 01:22:16] 2025-10-12 23:21:44,815 | INFO     | ***************************************
[2025-10-13 01:22:16] 2025-10-12 23:21:44,815 | INFO     | 
[2025-10-13 01:22:16] 2025-10-12 23:21:44,815 | INFO     | architecture information:
[2025-10-13 01:22:16] 2025-10-12 23:21:44,816 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:22:16] 2025-10-12 23:21:44,824 | INFO     | cat /etc/os-release:
[2025-10-13 01:22:16] NAME="CentOS Linux"
[2025-10-13 01:22:16] VERSION="7 (Core)"
[2025-10-13 01:22:16] ID="centos"
[2025-10-13 01:22:16] ID_LIKE="rhel fedora"
[2025-10-13 01:22:16] VERSION_ID="7"
[2025-10-13 01:22:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:22:16] ANSI_COLOR="0;31"
[2025-10-13 01:22:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:22:16] HOME_URL="https://www.centos.org/"
[2025-10-13 01:22:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:22:16] 
[2025-10-13 01:22:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:22:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:22:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:22:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:22:16] 
[2025-10-13 01:22:16] 2025-10-12 23:21:44,825 | INFO     | ***************************************
[2025-10-13 01:22:16] 2025-10-12 23:21:45,327 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:22:16] 2025-10-12 23:21:45,337 | INFO     | sufficient remaining disk space (255685820416 B)
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | INFO     | update_server=False
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:22:16] 2025-10-12 23:21:45,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:22:16] 2025-10-12 23:21:45,385 | INFO     | all data control threads have been joined
[2025-10-13 01:22:16] 2025-10-12 23:21:46,056 | INFO     | all job control threads have been joined
[2025-10-13 01:22:16] 2025-10-12 23:21:46,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:22:16] 2025-10-12 23:21:46,142 | INFO     | aborting loop
[2025-10-13 01:22:16] 2025-10-12 23:21:46,299 | INFO     | all payload control threads have been joined
[2025-10-13 01:22:16] 2025-10-12 23:21:46,339 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:46,343 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:46,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:46,391 | INFO     | [data] control thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:46,770 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,062 | INFO     | [job] control thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,147 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,159 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,196 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,305 | INFO     | [payload] control thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,345 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,705 | INFO     | [job] validate thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,741 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,830 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,832 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:47,914 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:22:16] 2025-10-12 23:21:49,345 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:22:16] 2025-10-12 23:21:51,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853262595904)>', '<ExcThread(monitor, started 139852641195776)>']
[2025-10-13 01:22:16] 2025-10-12 23:21:56,273 | INFO     | all workflow threads have been joined
[2025-10-13 01:22:16] 2025-10-12 23:21:56,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:22:16] 2025-10-12 23:21:56,274 | INFO     | traces error code: 0
[2025-10-13 01:22:16] 2025-10-12 23:21:56,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:22:16] 2025-10-12 23:22:16,120 | INFO     | PID=2635215 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:22:16] 2025-10-12 23:22:16,121 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:22:16] 2025-10-12 23:22:16,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:22:16] 2025-10-12 23:22:16,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:22:16] 2025-10-12 23:22:16,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:22:16] 2025-10-12 23:22:16,121 | INFO     | [monitor] control thread has ended
[2025-10-13 01:22:16] 2025-10-12 23:22:16,167 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:22:16] 2025-10-12 23:22:16,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:22:16] 2025-10-12 23:22:16,172 [wrapper] pilotpid: 2635215
[2025-10-13 01:22:16] 2025-10-12 23:22:16,174 [wrapper] Pilot exit status: 0
[2025-10-13 01:22:16] 2025-10-12 23:22:16,181 [wrapper] pandaids: 6838851773
[2025-10-13 01:22:16] 2025-10-12 23:22:16,196 [wrapper] cleanup supervisor_pilot 2654121 2635216
[2025-10-13 01:22:16] 2025-10-12 23:22:16,199 [wrapper] Test setup, not cleaning
[2025-10-13 01:22:16] 2025-10-12 23:22:16,201 [wrapper] apfmon messages muted
[2025-10-13 01:22:16] 2025-10-12 23:22:16,203 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:22:16] 2025-10-12 23:22:16,206 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:22:16]  *** Error codes and diagnostics ***
[2025-10-13 01:22:16]     "exeErrorCode": 0,
[2025-10-13 01:22:16]     "exeErrorDiag": "",
[2025-10-13 01:22:16]     "pilotErrorCode": 0,
[2025-10-13 01:22:16]     "pilotErrorDiag": "",
[2025-10-13 01:22:16]  *** Listing of results directory ***
[2025-10-13 01:22:16] total 411508
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc      5112 Oct 11 21:53 queuedata.json
[2025-10-13 01:22:16] -rwx------ 1 boinc boinc     36292 Oct 11 21:53 runpilot2-wrapper.sh
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:22:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:54 run_atlas
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:54 job.xml
[2025-10-13 01:22:16] -rw-r--r-- 2 boinc boinc 219432183 Oct 12 23:54 EVNT.46676267._002570.pool.root.1
[2025-10-13 01:22:16] -rw-r--r-- 2 boinc boinc    576710 Oct 12 23:54 input.tar.gz
[2025-10-13 01:22:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:54 start_atlas.sh
[2025-10-13 01:22:16] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:54 shared
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:54 boinc_setup_complete
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc      6437 Oct 12 23:54 init_data.xml
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:54 boinc_lockfile
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:54 pandaJob.out
[2025-10-13 01:22:16] -rw------- 1 boinc boinc    975528 Oct 12 23:54 agis_schedconf.cvmfs.json
[2025-10-13 01:22:16] -rw------- 1 boinc boinc   1560580 Oct 12 23:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:22:16] drwx------ 4 boinc boinc      4096 Oct 12 23:54 pilot3
[2025-10-13 01:22:16] -rw------- 1 boinc boinc 196007448 Oct 13 01:21 HITS.46676269._063946.pool.root.1
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc       529 Oct 13 01:21 boinc_task_state.xml
[2025-10-13 01:22:16] -rw------- 1 boinc boinc      1022 Oct 13 01:21 memory_monitor_summary.json
[2025-10-13 01:22:16] -rw------- 1 boinc boinc    261911 Oct 13 01:21 log.46676269._063946.job.log.tgz.1
[2025-10-13 01:22:16] -rw------- 1 boinc boinc      7759 Oct 13 01:21 heartbeat.json
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:22 wrapper_checkpoint.txt
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:22 boinc_mmap_file
[2025-10-13 01:22:16] -rw------- 1 boinc boinc       747 Oct 13 01:22 pilotlog.txt
[2025-10-13 01:22:16] -rw------- 1 boinc boinc        95 Oct 13 01:22 pilot_heartbeat.json
[2025-10-13 01:22:16] -rw------- 1 boinc boinc    760970 Oct 13 01:22 log.46676269._063946.job.log.1
[2025-10-13 01:22:16] -rw------- 1 boinc boinc       357 Oct 13 01:22 output.list
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:22 runtime_log
[2025-10-13 01:22:16] -rw------- 1 boinc boinc   1044480 Oct 13 01:22 result.tar.gz
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc      8777 Oct 13 01:22 runtime_log.err
[2025-10-13 01:22:16] -rw------- 1 boinc boinc       658 Oct 13 01:22 GUYNDmjpuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfThNDm9yR3Rn.diag
[2025-10-13 01:22:16] -rw-r--r-- 1 boinc boinc     11827 Oct 13 01:22 stderr.txt
[2025-10-13 01:22:16] HITS file was successfully produced:
[2025-10-13 01:22:16] -rw------- 1 boinc boinc 196007448 Oct 13 01:21 shared/HITS.pool.root.1
[2025-10-13 01:22:16]  *** Contents of shared directory: ***
[2025-10-13 01:22:16] total 407316
[2025-10-13 01:22:16] -rw-r--r-- 2 boinc boinc 219432183 Oct 12 23:54 ATLAS.root_0
[2025-10-13 01:22:16] -rw-r--r-- 2 boinc boinc    576710 Oct 12 23:54 input.tar.gz
[2025-10-13 01:22:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:54 start_atlas.sh
[2025-10-13 01:22:16] -rw------- 1 boinc boinc 196007448 Oct 13 01:21 HITS.pool.root.1
[2025-10-13 01:22:16] -rw------- 1 boinc boinc   1044480 Oct 13 01:22 result.tar.gz
01:22:18 (2631496): run_atlas exited; CPU time 15005.343130
01:22:18 (2631496): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN