Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 16:33:11 (18036): vboxwrapper version 26210
2025-10-12 16:33:11 (18036): BOINC client version: 8.0.2
2025-10-12 16:33:11 (18036): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-10-12 16:33:12 (18036): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 16:33:12 (18036): Create VM. (boinc_bf83ba39bde578d1, slot#1)
2025-10-12 16:33:13 (18036): Setting Memory Size for VM. (4400MB)
2025-10-12 16:33:13 (18036): Setting CPU Count for VM. (4)
2025-10-12 16:33:13 (18036): Setting Chipset Options for VM.
2025-10-12 16:33:14 (18036): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 16:33:14 (18036): Setting Boot Options for VM.
2025-10-12 16:33:14 (18036): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 16:33:15 (18036): Enabling VM Network Access.
2025-10-12 16:33:15 (18036): Disabling USB Support for VM.
2025-10-12 16:33:15 (18036): Disabling COM Port Support for VM.
2025-10-12 16:33:15 (18036): Disabling LPT Port Support for VM.
2025-10-12 16:33:16 (18036): Disabling Audio Support for VM.
2025-10-12 16:33:16 (18036): Disabling Clipboard Support for VM.
2025-10-12 16:33:16 (18036): Disabling Drag and Drop Support for VM.
2025-10-12 16:33:16 (18036): Adding storage controller(s) to VM.
2025-10-12 16:33:17 (18036): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 16:33:17 (18036): Adding VirtualBox Guest Additions to VM.
2025-10-12 16:33:17 (18036): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 16:33:18 (18036): forwarding host port 58249 to guest port 80
2025-10-12 16:33:18 (18036): Enabling remote desktop for VM.
2025-10-12 16:33:19 (18036): Required extension pack not installed, remote desktop not enabled.
2025-10-12 16:33:19 (18036): Enabling shared directory for VM.
2025-10-12 16:33:19 (18036): Starting VM using VBoxManage interface. (boinc_bf83ba39bde578d1, slot#1)
2025-10-12 16:33:25 (18036): Successfully started VM. (PID = '13852')
2025-10-12 16:33:25 (18036): Reporting VM Process ID to BOINC.
2025-10-12 16:33:25 (18036): Guest Log: BIOS: VirtualBox 6.1.34
2025-10-12 16:33:25 (18036): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 16:33:25 (18036): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 16:33:25 (18036): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 16:33:25 (18036): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 16:33:25 (18036): Detected: Web Application Enabled (http://localhost:58249)
2025-10-12 16:33:25 (18036): Preference change detected
2025-10-12 16:33:25 (18036): Setting CPU throttle for VM. (50%)
2025-10-12 16:33:25 (18036): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 16:33:27 (18036): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 16:33:27 (18036): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 16:33:32 (18036): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 16:33:32 (18036): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 16:33:32 (18036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 16:33:42 (18036): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 16:33:42 (18036): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-12 16:33:55 (18036): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000166 main     Log opened 2025-10-12T16:33:53.701182000Z
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000299 main     OS Product: Linux
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000347 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000381 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000414 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000415 main     Process ID: 1307
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.000415 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 16:33:55 (18036): Guest Log: 00:00:00.002478 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 16:33:56 (18036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 16:33:56 (18036): Guest Log: [INFO] Mounting shared directory
2025-10-12 16:33:56 (18036): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 16:34:00 (18036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 16:34:00 (18036): Guest Log: [INFO] Detected branch: prod
2025-10-12 16:34:00 (18036): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 16:34:00 (18036): Guest Log: Copying input files
2025-10-12 16:34:03 (18036): Guest Log: Copied input files into RunAtlas.
2025-10-12 16:34:03 (18036): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 16:34:03 (18036): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 16:34:03 (18036): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 16:34:03 (18036): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 16:34:05 (18036): Guest Log: 00:00:10.008238 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 843 740 000ns (GuestNow=1 760 301 245 549 940 000 ns GuestLast=1 760 286 833 706 200 000 ns fSetTimeLastLoop=true )
2025-10-12 16:34:11 (18036): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 16:34:14 (18036): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 16:34:14 (18036): Guest Log: 2.6.3.0 1584 0 30132 151636 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 16:34:17 (18036): Guest Log: copied the webapp to /var/www
2025-10-12 16:34:17 (18036): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-12 16:34:17 (18036): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-12 16:34:18 (18036): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 16:34:18 (18036): Guest Log:  *** Starting ATLAS job. (PandaID=6839242695 taskID=46676269) ***
2025-10-12 16:41:56 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:42:16 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:42:26 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:42:47 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:42:56 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:43:16 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:43:26 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:43:47 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:43:56 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:44:16 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:44:26 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:44:46 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:44:56 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:45:16 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 16:45:27 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 16:45:28 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 18:16:00 (18036): Status Report: Elapsed Time: '6000.000000'
2025-10-12 18:16:00 (18036): Status Report: CPU Time: '13518.375000'
2025-10-12 19:02:21 (18036): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 19:32:22 (18036): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 19:32:31 (18036): Guest Log: 02:26:17.606439 timesync vgsvcTimeSyncWorker: Radical host time change: 1 810 375 000 000ns (HostNow=1 760 311 950 566 000 000 ns HostLast=1 760 310 140 191 000 000 ns)
2025-10-12 19:32:41 (18036): Guest Log: 02:26:27.606698 timesync vgsvcTimeSyncWorker: Radical guest time change: 1 947 469 244 000ns (GuestNow=1 760 311 960 591 881 000 ns GuestLast=1 760 310 013 122 637 000 ns fSetTimeLastLoop=true )
2025-10-12 19:34:31 (18036): Guest Log:  *** Job finished ***
2025-10-12 19:34:31 (18036): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:04,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:04,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:24,805 | INFO     | [monitor] cgroup control has ended
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:25,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026914666304)>', '<ExcThread(monitor, started 140026167932672)>']
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:26,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:26,687 | INFO     | [monitor] control thread has ended
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,757 | INFO     | all workflow threads have been joined
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,757 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,758 | INFO     | traces error code: 0
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,871 [wrapper] ==== pilot stdout END ====
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,875 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,878 [wrapper] pilotpid: 5980
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,882 [wrapper] Pilot exit status: 0
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,955 [wrapper] pandaids: 6839242695
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,987 [wrapper] cleanup supervisor_pilot  5238 5981
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,992 [wrapper] Test setup, not cleaning
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:30,997 [wrapper] apfmon messages muted
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:31,000 [wrapper] ==== wrapper stdout END ====
2025-10-12 19:34:31 (18036): Guest Log: 2025-10-12 23:34:31,003 [wrapper] ==== wrapper stderr END ====
2025-10-12 19:34:31 (18036): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 19:34:31 (18036): Guest Log:     "exeErrorCode": 0,
2025-10-12 19:34:31 (18036): Guest Log:     "exeErrorDiag": "",
2025-10-12 19:34:31 (18036): Guest Log:     "pilotErrorCode": 0,
2025-10-12 19:34:31 (18036): Guest Log:     "pilotErrorDiag": "",
2025-10-12 19:34:31 (18036): Guest Log:  *** Listing of results directory ***
2025-10-12 19:34:31 (18036): Guest Log: total 190948
2025-10-12 19:34:31 (18036): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 01:53 pilot3.tar.gz
2025-10-12 19:34:31 (18036): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 02:02 queuedata.json
2025-10-12 19:34:31 (18036): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 02:02 runpilot2-wrapper.sh
2025-10-12 19:34:31 (18036): Guest Log: -rwxr-xr-x. 1 atlas atlas      6193 Oct 12 20:34 init_data.xml
2025-10-12 19:34:31 (18036): Guest Log: -rwxr-xr-x. 1 atlas atlas    569677 Oct 12 20:34 input.tar.gz
2025-10-12 19:34:31 (18036): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 20:34 start_atlas.sh
2025-10-12 19:34:31 (18036): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 20:34 EVNT.46676267._003175.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 19:34:31 (18036): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 20:34 pandaJob.out
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas    975536 Oct 12 20:34 agis_schedconf.cvmfs.json
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 20:34 agis_ddmendpoints.agis.ALL.json
2025-10-12 19:34:31 (18036): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 20:34 pilot3
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas 188955078 Oct 12 23:32 HITS.46676269._069105.pool.root.1
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas      1029 Oct 12 23:33 memory_monitor_summary.json
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas    304986 Oct 12 23:33 log.46676269._069105.job.log.tgz.1
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas      7819 Oct 12 23:33 heartbeat.json
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas        97 Oct 12 23:33 pilot_heartbeat.json
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 12 23:34 pilotlog.txt
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas   1069045 Oct 12 23:34 log.46676269._069105.job.log.1
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 23:34 output.list
2025-10-12 19:34:31 (18036): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 23:34 runtime_log
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas   1392640 Oct 12 23:34 result.tar.gz
2025-10-12 19:34:31 (18036): Guest Log: -rw-r--r--. 1 atlas atlas      8676 Oct 12 23:34 runtime_log.err
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas       668 Oct 12 23:34 2KwKDmKb0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmS0SMDmJyXuXm.diag
2025-10-12 19:34:31 (18036): Guest Log: Looking for outputfile HITS.46676269._069105.pool.root.1
2025-10-12 19:34:31 (18036): Guest Log: HITS file was successfully produced
2025-10-12 19:34:31 (18036): Guest Log: -rw-------. 1 atlas atlas 188955078 Oct 12 23:32 /home/atlas/RunAtlas/HITS.46676269._069105.pool.root.1
2025-10-12 19:34:33 (18036): Guest Log: Successfully finished the ATLAS job!
2025-10-12 19:34:33 (18036): Guest Log: Copying the results back to the shared directory!
2025-10-12 19:34:33 (18036): Guest Log:  *** Contents of shared directory: ***
2025-10-12 19:34:33 (18036): Guest Log: total 402520
2025-10-12 19:34:33 (18036): Guest Log: -rwxrwxrwx. 1 root root 221232752 Oct 12 20:33 ATLAS.root_0
2025-10-12 19:34:33 (18036): Guest Log: -rwxrwxrwx. 1 root root 188955078 Oct 12 23:34 HITS.pool.root.1
2025-10-12 19:34:33 (18036): Guest Log: -rwxrwxrwx. 1 root root      6193 Oct 12 20:33 init_data.xml
2025-10-12 19:34:33 (18036): Guest Log: -rwxrwxrwx. 1 root root    569677 Oct 12 07:13 input.tar.gz
2025-10-12 19:34:33 (18036): Guest Log: -rwxrwxrwx. 1 root root   1392640 Oct 12 23:34 result.tar.gz
2025-10-12 19:34:33 (18036): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 07:13 start_atlas.sh
2025-10-12 19:34:33 (18036): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 19:34:33 (18036): VM Completion File Detected.
2025-10-12 19:34:33 (18036): Powering off VM.
2025-10-12 19:34:34 (18036): Successfully stopped VM.
2025-10-12 19:34:34 (18036): Deregistering VM. (boinc_bf83ba39bde578d1, slot#1)
2025-10-12 19:34:34 (18036): Removing network bandwidth throttle group from VM.
2025-10-12 19:34:34 (18036): Removing VM from VirtualBox.
2025-10-12 19:34:39 (18036): called boinc_finish(0)

</stderr_txt>
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