Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:38:21 (3055067): wrapper (7.7.26015): starting
16:38:21 (3055067): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:38:21] Arguments: --nthreads 8
[2025-10-12 16:38:21] Threads: 8
[2025-10-12 16:38:21] Checking for CVMFS
[2025-10-12 16:38:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:38:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:38:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:38:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:38:21] 2.13.2.0 1338992 4560 59232 151623 2 57 3142303 4097025 0 130560 0 4710822 99.993 156031 26781 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 16:38:21] CVMFS is ok
[2025-10-12 16:38:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:38:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:38:21] Further information can be found at the LHC@home message board.
[2025-10-12 16:38:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:38:21] Checking for apptainer binary...
[2025-10-12 16:38:21] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 16:38:21] apptainer is not installed, using version from CVMFS
[2025-10-12 16:38:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:38:21] pckeatlas02
[2025-10-12 16:38:21] apptainer works
[2025-10-12 16:38:21] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:38:21] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:38:21] Starting ATLAS job with PandaID=6839242344
[2025-10-12 16:38:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:56:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:56:40]  protocol_id=None
[2025-10-12 17:56:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:56:40]  replicas=None
[2025-10-12 17:56:40]  scope=mc23_13p6TeV
[2025-10-12 17:56:40]  status=None
[2025-10-12 17:56:40]  status_code=0
[2025-10-12 17:56:40]  storage_token=
[2025-10-12 17:56:40]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6839242344/log.46676269._068988.job.log.tgz.1
[2025-10-12 17:56:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/bb/log.46676269._068988.job.log.tgz.1
[2025-10-12 17:56:40]  workdir=None
[2025-10-12 17:56:40] ]
[2025-10-12 17:56:40] 2025-10-12 15:55:43,662 | INFO     | transferring file log.46676269._068988.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6839242344/log.46676269._068988.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 17:56:40] 2025-10-12 15:55:43,663 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6839242344/log.46676269._068988.job.log.tgz.1 /var/lib/boinc/slots/19/log.46676269._068988.j
[2025-10-12 17:56:40] 2025-10-12 15:55:43,670 | INFO     | adding to output.list: log.46676269._068988.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/bb/log.46676269._068988.job.log.tg
[2025-10-12 17:56:40] 2025-10-12 15:55:43,670 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:56:40] 2025-10-12 15:55:43,670 | INFO     | summary of transferred files:
[2025-10-12 17:56:40] 2025-10-12 15:55:43,670 | INFO     |  -- lfn=log.46676269._068988.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:56:40] 2025-10-12 15:55:43,670 | INFO     | stage-out finished correctly
[2025-10-12 17:56:40] 2025-10-12 15:55:45,254 | INFO     | time since job start (4640s) is within the limit (172800.0s)
[2025-10-12 17:56:40] 2025-10-12 15:55:45,386 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:56:40] 2025-10-12 15:55:45,756 | INFO     | monitor loop #354: job 0:6839242344 is in state 'finished'
[2025-10-12 17:56:40] 2025-10-12 15:55:45,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:56:40] 2025-10-12 15:55:45,934 | INFO     | job 6839242344 has state=finished
[2025-10-12 17:56:40] 2025-10-12 15:55:45,934 | INFO     | preparing for final server update for job 6839242344 in state='finished'
[2025-10-12 17:56:40] 2025-10-12 15:55:45,934 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:56:40] 2025-10-12 15:55:45,934 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:56:40] 2025-10-12 15:55:45,935 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:56:40] 2025-10-12 15:55:45,935 | INFO     | job 6839242344 has finished - writing final server update
[2025-10-12 17:56:40] 2025-10-12 15:55:45,935 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:56:40] 2025-10-12 15:55:45,935 | INFO     | executing command: lscpu
[2025-10-12 17:56:40] 2025-10-12 15:55:45,943 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:56:40] 2025-10-12 15:55:47,259 | INFO     | time since job start (4642s) is within the limit (172800.0s)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,258 | INFO     | monitor loop #355: job 0:6839242344 is in state 'finished'
[2025-10-12 17:56:40] 2025-10-12 15:55:48,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,555 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:56:40] 2025-10-12 15:55:48,556 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3854.287125
[2025-10-12 17:56:40] 2025-10-12 15:55:48,557 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6839242344/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,557 | INFO     | extracted standard info from prmon json
[2025-10-12 17:56:40] 2025-10-12 15:55:48,557 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:56:40] 2025-10-12 15:55:48,557 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:56:40] 2025-10-12 15:55:48,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:56:40] 2025-10-12 15:55:48,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | sum of square deviations: 101843770.0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | sum of deviations: -13520097462.0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | mean x: 1760282303.0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | mean y: 2751116.2898550723
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | -- intersect: 233686051500.72983
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | intersect: 233686051500.72983
[2025-10-12 17:56:40] 2025-10-12 15:55:48,558 | INFO     | chi2: 0.1057817817490413
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | -- intersect: 233686051500.72983
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | current memory leak: -132.75 B/s (using 69 data points, chi2=0.11)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | could have reported an average CPU frequency of 3770 MHz (6 samples)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | ..............................
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . Timing measurements:
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . get job = 0 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . initial setup = 0 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . payload setup = 3 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . stage-in = 0 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . payload execution = 4617 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . stage-out = 0 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | . log creation = 0 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,559 | INFO     | ..............................
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | 
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | job summary report
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | --------------------------------------------------
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | PanDA job id: 6839242344
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | task id: 46676269
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | errors: (none)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | pilot state: finished 
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | transexitcode: 0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | exeerrorcode: 0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,935 | INFO     | exeerrordiag: 
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | exitcode: 0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | exitmsg: OK
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | cpuconsumptiontime: 35186 s
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | nevents: 400
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | neventsw: 0
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | pid: 3066126
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | pgrp: 3066126
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | corecount: 8
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | event service: False
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | sizes: {0: 2348631, 1: 2348886, 3: 2349148, 11: 2349176, 4624: 2375434, 4625: 2384434, 4627: 2384618, 4630: 2384812}
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | --------------------------------------------------
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | 
[2025-10-12 17:56:40] 2025-10-12 15:55:48,936 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-10-12 17:56:40] 2025-10-12 15:55:48,943 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | job 6839242344 has completed (purged errors)
[2025-10-12 17:56:40] 2025-10-12 15:55:48,944 | INFO     | overall cleanup function is called
[2025-10-12 17:56:40] 2025-10-12 15:55:49,950 | INFO     | --- collectZombieJob: --- 10, [3066126]
[2025-10-12 17:56:40] 2025-10-12 15:55:49,951 | INFO     | zombie collector waiting for pid 3066126
[2025-10-12 17:56:40] 2025-10-12 15:55:49,951 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:56:40] 2025-10-12 15:55:49,951 | INFO     | collected zombie processes
[2025-10-12 17:56:40] 2025-10-12 15:55:49,951 | INFO     | will attempt to kill all subprocesses of pid=3066126
[2025-10-12 17:56:40] 2025-10-12 15:55:49,983 | INFO     | process IDs to be killed: [3066126] (in reverse order)
[2025-10-12 17:56:40] 2025-10-12 15:55:49,998 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:56:40] 2025-10-12 15:55:49,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:56:40] 2025-10-12 15:55:50,000 | INFO     | did not find any defunct processes belonging to 3066126
[2025-10-12 17:56:40] 2025-10-12 15:55:50,000 | INFO     | did not find any defunct processes belonging to 3066126
[2025-10-12 17:56:40] 2025-10-12 15:55:50,000 | INFO     | ready for new job
[2025-10-12 17:56:40] 2025-10-12 15:55:50,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:56:40] 2025-10-12 15:55:50,001 | INFO     | ***************************************
[2025-10-12 17:56:40] 2025-10-12 15:55:50,001 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:56:40] 2025-10-12 15:55:50,001 | INFO     | ***************************************
[2025-10-12 17:56:40] 2025-10-12 15:55:50,001 | INFO     | 
[2025-10-12 17:56:40] 2025-10-12 15:55:50,002 | INFO     | architecture information:
[2025-10-12 17:56:40] 2025-10-12 15:55:50,002 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:56:40] 2025-10-12 15:55:50,007 | INFO     | cat /etc/os-release:
[2025-10-12 17:56:40] NAME="CentOS Linux"
[2025-10-12 17:56:40] VERSION="7 (Core)"
[2025-10-12 17:56:40] ID="centos"
[2025-10-12 17:56:40] ID_LIKE="rhel fedora"
[2025-10-12 17:56:40] VERSION_ID="7"
[2025-10-12 17:56:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:56:40] ANSI_COLOR="0;31"
[2025-10-12 17:56:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:56:40] HOME_URL="https://www.centos.org/"
[2025-10-12 17:56:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:56:40] 
[2025-10-12 17:56:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:56:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:56:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:56:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:56:40] 
[2025-10-12 17:56:40] 2025-10-12 15:55:50,007 | INFO     | ***************************************
[2025-10-12 17:56:40] 2025-10-12 15:55:50,510 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-10-12 17:56:40] 2025-10-12 15:55:50,516 | INFO     | sufficient remaining disk space (118212263936 B)
[2025-10-12 17:56:40] 2025-10-12 15:55:50,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:56:40] 2025-10-12 15:55:50,517 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:56:40] 2025-10-12 15:55:50,517 | INFO     | update_server=False
[2025-10-12 17:56:40] 2025-10-12 15:55:50,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:56:40] 2025-10-12 15:55:50,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:56:40] 2025-10-12 15:55:50,762 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:56:40] 2025-10-12 15:55:50,762 | INFO     | all data control threads have been joined
[2025-10-12 17:56:40] 2025-10-12 15:55:50,762 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:56:40] 2025-10-12 15:55:50,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:56:40] 2025-10-12 15:55:50,762 | INFO     | will abort loop
[2025-10-12 17:56:40] 2025-10-12 15:55:51,046 | INFO     | all payload control threads have been joined
[2025-10-12 17:56:40] 2025-10-12 15:55:51,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:56:40] 2025-10-12 15:55:51,522 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:51,522 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:51,565 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:51,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:56:40] 2025-10-12 15:55:51,755 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:51,766 | INFO     | all job control threads have been joined
[2025-10-12 17:56:40] 2025-10-12 15:55:51,767 | INFO     | [data] control thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:51,767 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,051 | INFO     | [payload] control thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,073 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,138 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,309 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,771 | INFO     | [job] control thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,944 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:52,990 | INFO     | [job] validate thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:53,724 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:55:55,431 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:56:01,088 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:56:40] 2025-10-12 15:56:02,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:56:40] 2025-10-12 15:56:20,390 | INFO     | PID=3058818 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:56:40] 2025-10-12 15:56:20,390 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:56:40] 2025-10-12 15:56:20,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:56:40] 2025-10-12 15:56:20,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:56:40] 2025-10-12 15:56:33,104 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:56:40] 2025-10-12 15:56:35,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140450080618304)>', '<ExcThread(monitor, started 140449314498304)>']
[2025-10-12 17:56:40] 2025-10-12 15:56:35,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:56:40] 2025-10-12 15:56:35,467 | INFO     | [monitor] control thread has ended
[2025-10-12 17:56:40] 2025-10-12 15:56:40,075 | INFO     | all workflow threads have been joined
[2025-10-12 17:56:40] 2025-10-12 15:56:40,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:56:40] 2025-10-12 15:56:40,075 | INFO     | traces error code: 0
[2025-10-12 17:56:40] 2025-10-12 15:56:40,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:56:40] 2025-10-12 15:56:40,133 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:56:40] 2025-10-12 15:56:40,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:56:40] 2025-10-12 15:56:40,135 [wrapper] pilotpid: 3058818
[2025-10-12 17:56:40] 2025-10-12 15:56:40,136 [wrapper] Pilot exit status: 0
[2025-10-12 17:56:40] 2025-10-12 15:56:40,140 [wrapper] pandaids: 6839242344
[2025-10-12 17:56:40] 2025-10-12 15:56:40,150 [wrapper] cleanup supervisor_pilot 3081846 3058819
[2025-10-12 17:56:40] 2025-10-12 15:56:40,152 [wrapper] Test setup, not cleaning
[2025-10-12 17:56:40] 2025-10-12 15:56:40,153 [wrapper] apfmon messages muted
[2025-10-12 17:56:40] 2025-10-12 15:56:40,154 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:56:40] 2025-10-12 15:56:40,155 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:56:40]  *** Error codes and diagnostics ***
[2025-10-12 17:56:40]     "exeErrorCode": 0,
[2025-10-12 17:56:40]     "exeErrorDiag": "",
[2025-10-12 17:56:40]     "pilotErrorCode": 0,
[2025-10-12 17:56:40]     "pilotErrorDiag": "",
[2025-10-12 17:56:40]  *** Listing of results directory ***
[2025-10-12 17:56:40] total 407376
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc    557409 Oct 12 03:26 pilot3.tar.gz
[2025-10-12 17:56:40] -rwx------. 1 boinc boinc     36292 Oct 12 03:49 runpilot2-wrapper.sh
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc      5112 Oct 12 03:49 queuedata.json
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc       100 Oct 12 16:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:56:40] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 16:38 run_atlas
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc       105 Oct 12 16:38 job.xml
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc      6275 Oct 12 16:38 init_data.xml
[2025-10-12 17:56:40] -rw-r--r--. 2 boinc boinc 222016170 Oct 12 16:38 EVNT.46676267._003168.pool.root.1
[2025-10-12 17:56:40] drwxrwx--x. 2 boinc boinc        68 Oct 12 16:38 shared
[2025-10-12 17:56:40] -rw-r--r--. 2 boinc boinc    569675 Oct 12 16:38 input.tar.gz
[2025-10-12 17:56:40] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:38 start_atlas.sh
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc         0 Oct 12 16:38 boinc_lockfile
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc      2550 Oct 12 16:38 pandaJob.out
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc    975528 Oct 12 16:38 agis_schedconf.cvmfs.json
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc   1560580 Oct 12 16:38 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:56:40] drwx------. 5 boinc boinc      4096 Oct 12 16:38 pilot3
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc 189218514 Oct 12 17:55 HITS.46676269._068988.pool.root.1
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc       529 Oct 12 17:55 boinc_task_state.xml
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc      1014 Oct 12 17:55 memory_monitor_summary.json
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc    329120 Oct 12 17:55 log.46676269._068988.job.log.tgz.1
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc      7774 Oct 12 17:55 heartbeat.json
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc        95 Oct 12 17:56 pilot_heartbeat.json
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc      8192 Oct 12 17:56 boinc_mmap_file
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc        27 Oct 12 17:56 wrapper_checkpoint.txt
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc      5008 Oct 12 17:56 pilotlog.txt
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc    683666 Oct 12 17:56 log.46676269._068988.job.log.1
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc       357 Oct 12 17:56 output.list
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc       620 Oct 12 17:56 runtime_log
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc   1034240 Oct 12 17:56 result.tar.gz
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc       650 Oct 12 17:56 xyxNDmIO0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNzSMDmnI5Sam.diag
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc      8730 Oct 12 17:56 runtime_log.err
[2025-10-12 17:56:40] -rw-r--r--. 1 boinc boinc     21865 Oct 12 17:56 stderr.txt
[2025-10-12 17:56:40] HITS file was successfully produced:
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc 189218514 Oct 12 17:55 shared/HITS.pool.root.1
[2025-10-12 17:56:40]  *** Contents of shared directory: ***
[2025-10-12 17:56:40] total 403188
[2025-10-12 17:56:40] -rw-r--r--. 2 boinc boinc 222016170 Oct 12 16:38 ATLAS.root_0
[2025-10-12 17:56:40] -rw-r--r--. 2 boinc boinc    569675 Oct 12 16:38 input.tar.gz
[2025-10-12 17:56:40] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:38 start_atlas.sh
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc 189218514 Oct 12 17:55 HITS.pool.root.1
[2025-10-12 17:56:40] -rw-------. 1 boinc boinc   1034240 Oct 12 17:56 result.tar.gz
17:56:41 (3055067): run_atlas exited; CPU time 35224.149807
17:56:41 (3055067): called boinc_finish(0)

</stderr_txt>
]]>

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