Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:20:08 (728933): wrapper (7.7.26015): starting
02:20:08 (728933): wrapper: running run_atlas (--nthreads 3)
[2025-10-14 02:20:08] Arguments: --nthreads 3
[2025-10-14 02:20:08] Threads: 3
[2025-10-14 02:20:08] Checking for CVMFS
[2025-10-14 02:20:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 02:20:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 02:20:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 02:20:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 02:20:56] 2.11.5.0 729152 0 28664 151668 3 1 13721771 15728640 0 130560 0 0 0.000 1293 57 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-14 02:20:56] CVMFS is ok
[2025-10-14 02:20:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 02:20:56] Checking for apptainer binary...
[2025-10-14 02:20:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 02:20:56] Running /usr/bin/apptainer --version
[2025-10-14 02:20:56] apptainer version 1.3.4-1.el9
[2025-10-14 02:20:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 02:20:56] testio003
[2025-10-14 02:20:56] apptainer works
[2025-10-14 02:20:56] Set ATHENA_PROC_NUMBER=3
[2025-10-14 02:20:56] Set ATHENA_CORE_NUMBER=3
[2025-10-14 02:20:56] Starting ATLAS job with PandaID=6839221553
[2025-10-14 02:20:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 04:21:43]  *** The last 200 lines of the pilot log: ***
[2025-10-14 04:21:43] 2025-10-13 19:20:54,524 | INFO     | time since job start (7108s) is within the limit (172800.0s)
[2025-10-14 04:21:43] 2025-10-13 19:20:54,619 | INFO     | monitor loop #550: job 0:6839221553 is in state 'finished'
[2025-10-14 04:21:43] 2025-10-13 19:20:54,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,781 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 04:21:43] 2025-10-13 19:20:55,782 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3506.39175
[2025-10-14 04:21:43] 2025-10-13 19:20:55,782 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839221553/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,783 | INFO     | extracted standard info from prmon json
[2025-10-14 04:21:43] 2025-10-13 19:20:55,783 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 04:21:43] 2025-10-13 19:20:55,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 04:21:43] 2025-10-13 19:20:55,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 04:21:43] 2025-10-13 19:20:55,783 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | fitting pss+swap vs Time
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | sum of square deviations: 471562330.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | sum of deviations: -11015497425.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | mean x: 1760379648.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | mean y: 2452531.730434783
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | -- intersect: 41124179705.24408
[2025-10-14 04:21:43] 2025-10-13 19:20:55,784 | INFO     | intersect: 41124179705.24408
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | chi2: 2.2344243547572167
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | sum of square deviations: 412686807.5
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | sum of deviations: -9445348610.499996
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | mean x: 1760379495.5
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | mean y: 2456596.881818182
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | -- intersect: 40293054017.47809
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | intersect: 40293054017.47809
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | chi2: 2.23588774562118
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | current chi2=2.23588774562118 (change=-0.06549296962537779 %)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | right removable region: 109
[2025-10-14 04:21:43] 2025-10-13 19:20:55,785 | INFO     | sum of square deviations: 412686807.5
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | sum of deviations: -33085954913.5
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | mean x: 1760379800.5
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | mean y: 2509031.609090909
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | -- intersect: 141135798614.60388
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | intersect: 141135798614.60388
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | chi2: 0.21230007861155487
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | current chi2=0.21230007861155487 (change=90.49866789360955 %)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | sum of square deviations: 358927660.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | sum of deviations: -29942310367.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | mean x: 1760379953.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | mean y: 2500059.0285714287
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | -- intersect: 146856166662.9645
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | intersect: 146856166662.9645
[2025-10-14 04:21:43] 2025-10-13 19:20:55,786 | INFO     | chi2: 0.20715821202483076
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | current chi2=0.20715821202483076 (change=2.42198053827958 %)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | left removable region: 20
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | sum of square deviations: 218571540.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | sum of deviations: -20146012134.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | mean x: 1760380075.0
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | mean y: 2481584.6516853934
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | -- intersect: 162258914198.897
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | intersect: 162258914198.897
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | chi2: 0.19040433456483424
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | -- intersect: 162258914198.897
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | current memory leak: -92.17 B/s (using 89 data points, chi2=0.19)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | could have reported an average CPU frequency of 3559 MHz (7 samples)
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | ..............................
[2025-10-14 04:21:43] 2025-10-13 19:20:55,787 | INFO     | . Timing measurements:
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . get job = 0 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . initial setup = 6 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . payload setup = 5 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . stage-in = 0 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . payload execution = 6996 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . stage-out = 0 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | . log creation = 0 s
[2025-10-14 04:21:43] 2025-10-13 19:20:55,788 | INFO     | ..............................
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | 
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | job summary report
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | --------------------------------------------------
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | PanDA job id: 6839221553
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | task id: 46676269
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | errors: (none)
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | pilot state: finished 
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | transexitcode: 0
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | exeerrorcode: 0
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | exeerrordiag: 
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | exitcode: 0
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | exitmsg: OK
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | cpuconsumptiontime: 19817 s
[2025-10-14 04:21:43] 2025-10-13 19:20:56,151 | INFO     | nevents: 400
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | neventsw: 0
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | pid: 739745
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | pgrp: 739745
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | corecount: 3
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | event service: False
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 7006: 2376461, 7008: 2385459, 7011: 2385643, 7094: 2385837}
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | --------------------------------------------------
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | 
[2025-10-14 04:21:43] 2025-10-13 19:20:56,152 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-14 04:21:43] 2025-10-13 19:20:56,162 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,162 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,162 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,162 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,162 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | job 6839221553 has completed (purged errors)
[2025-10-14 04:21:43] 2025-10-13 19:20:56,163 | INFO     | overall cleanup function is called
[2025-10-14 04:21:43] 2025-10-13 19:20:57,169 | INFO     | --- collectZombieJob: --- 10, [739745]
[2025-10-14 04:21:43] 2025-10-13 19:20:57,169 | INFO     | zombie collector waiting for pid 739745
[2025-10-14 04:21:43] 2025-10-13 19:20:57,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 04:21:43] 2025-10-13 19:20:57,169 | INFO     | collected zombie processes
[2025-10-14 04:21:43] 2025-10-13 19:20:57,170 | INFO     | will attempt to kill all subprocesses of pid=739745
[2025-10-14 04:21:43] 2025-10-13 19:20:57,208 | INFO     | process IDs to be killed: [739745] (in reverse order)
[2025-10-14 04:21:43] 2025-10-13 19:20:57,229 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 04:21:43] 2025-10-13 19:20:57,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 04:21:43] 2025-10-13 19:20:57,231 | INFO     | did not find any defunct processes belonging to 739745
[2025-10-14 04:21:43] 2025-10-13 19:20:57,232 | INFO     | did not find any defunct processes belonging to 739745
[2025-10-14 04:21:43] 2025-10-13 19:20:57,232 | INFO     | ready for new job
[2025-10-14 04:21:43] 2025-10-13 19:20:57,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 04:21:43] 2025-10-13 19:20:57,233 | INFO     | ***************************************
[2025-10-14 04:21:43] 2025-10-13 19:20:57,233 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 04:21:43] 2025-10-13 19:20:57,233 | INFO     | ***************************************
[2025-10-14 04:21:43] 2025-10-13 19:20:57,233 | INFO     | 
[2025-10-14 04:21:43] 2025-10-13 19:20:57,244 | INFO     | architecture information:
[2025-10-14 04:21:43] 2025-10-13 19:20:57,245 | INFO     | executing command: cat /etc/os-release
[2025-10-14 04:21:43] 2025-10-13 19:20:57,252 | INFO     | cat /etc/os-release:
[2025-10-14 04:21:43] NAME="CentOS Linux"
[2025-10-14 04:21:43] VERSION="7 (Core)"
[2025-10-14 04:21:43] ID="centos"
[2025-10-14 04:21:43] ID_LIKE="rhel fedora"
[2025-10-14 04:21:43] VERSION_ID="7"
[2025-10-14 04:21:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 04:21:43] ANSI_COLOR="0;31"
[2025-10-14 04:21:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 04:21:43] HOME_URL="https://www.centos.org/"
[2025-10-14 04:21:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 04:21:43] 
[2025-10-14 04:21:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 04:21:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 04:21:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 04:21:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 04:21:43] 
[2025-10-14 04:21:43] 2025-10-13 19:20:57,253 | INFO     | ***************************************
[2025-10-14 04:21:43] 2025-10-13 19:20:57,755 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | INFO     | sufficient remaining disk space (40292581376 B)
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | INFO     | update_server=False
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 04:21:43] 2025-10-13 19:20:57,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 04:21:43] 2025-10-13 19:20:57,886 | INFO     | all payload control threads have been joined
[2025-10-14 04:21:43] 2025-10-13 19:20:58,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 04:21:43] 2025-10-13 19:20:58,127 | INFO     | aborting loop
[2025-10-14 04:21:43] 2025-10-13 19:20:58,590 | INFO     | all data control threads have been joined
[2025-10-14 04:21:43] 2025-10-13 19:20:58,768 | INFO     | [job] retrieve thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:58,770 | INFO     | [job] queue monitor thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:58,774 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:58,789 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:58,891 | INFO     | [payload] control thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:58,989 | INFO     | all job control threads have been joined
[2025-10-14 04:21:43] 2025-10-13 19:20:59,133 | INFO     | [job] job monitor thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:59,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 04:21:43] 2025-10-13 19:20:59,595 | INFO     | [data] control thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:59,731 | INFO     | [payload] validate_post thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:59,770 | INFO     | [data] copytool_out thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:59,873 | INFO     | [payload] failed_post thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:59,950 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:20:59,994 | INFO     | [job] control thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:21:00,170 | INFO     | [data] copytool_in thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:21:00,218 | INFO     | [job] validate thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:21:03,308 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:21:08,358 | INFO     | job.realtimelogging is not enabled
[2025-10-14 04:21:43] 2025-10-13 19:21:09,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 04:21:43] 2025-10-13 19:21:27,643 | INFO     | PID=733220 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 04:21:43] 2025-10-13 19:21:27,644 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 04:21:43] 2025-10-13 19:21:27,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 04:21:43] 2025-10-13 19:21:27,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 04:21:43] 2025-10-13 19:21:38,121 | INFO     | [monitor] cgroup control has ended
[2025-10-14 04:21:43] 2025-10-13 19:21:38,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695214704448)>', '<ExcThread(monitor, started 139694205560576)>']
[2025-10-14 04:21:43] 2025-10-13 19:21:38,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 04:21:43] 2025-10-13 19:21:38,699 | INFO     | [monitor] control thread has ended
[2025-10-14 04:21:43] 2025-10-13 19:21:43,703 | INFO     | all workflow threads have been joined
[2025-10-14 04:21:43] 2025-10-13 19:21:43,703 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 04:21:43] 2025-10-13 19:21:43,704 | INFO     | traces error code: 0
[2025-10-14 04:21:43] 2025-10-13 19:21:43,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 04:21:43] 2025-10-13 19:21:43,763 [wrapper] ==== pilot stdout END ====
[2025-10-14 04:21:43] 2025-10-13 19:21:43,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 04:21:43] 2025-10-13 19:21:43,766 [wrapper] pilotpid: 733220
[2025-10-14 04:21:43] 2025-10-13 19:21:43,768 [wrapper] Pilot exit status: 0
[2025-10-14 04:21:43] 2025-10-13 19:21:43,773 [wrapper] pandaids: 6839221553
[2025-10-14 04:21:43] 2025-10-13 19:21:43,786 [wrapper] cleanup supervisor_pilot  753914 733221
[2025-10-14 04:21:43] 2025-10-13 19:21:43,787 [wrapper] Test setup, not cleaning
[2025-10-14 04:21:43] 2025-10-13 19:21:43,789 [wrapper] apfmon messages muted
[2025-10-14 04:21:43] 2025-10-13 19:21:43,791 [wrapper] ==== wrapper stdout END ====
[2025-10-14 04:21:43] 2025-10-13 19:21:43,793 [wrapper] ==== wrapper stderr END ====
[2025-10-14 04:21:43]  *** Error codes and diagnostics ***
[2025-10-14 04:21:43]     "exeErrorCode": 0,
[2025-10-14 04:21:43]     "exeErrorDiag": "",
[2025-10-14 04:21:43]     "pilotErrorCode": 0,
[2025-10-14 04:21:43]     "pilotErrorDiag": "",
[2025-10-14 04:21:43]  *** Listing of results directory ***
[2025-10-14 04:21:43] total 418152
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc    557409 Oct 12 10:26 pilot3.tar.gz
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc      5112 Oct 12 10:32 queuedata.json
[2025-10-14 04:21:43] -rwx------. 1 boinc boinc     36292 Oct 12 10:33 runpilot2-wrapper.sh
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc       100 Oct 14 02:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 04:21:43] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 02:20 run_atlas
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc       105 Oct 14 02:20 job.xml
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc      9291 Oct 14 02:20 init_data.xml
[2025-10-14 04:21:43] -rw-r--r--. 2 boinc boinc 221035123 Oct 14 02:20 EVNT.46676267._003151.pool.root.1
[2025-10-14 04:21:43] -rw-r--r--. 2 boinc boinc     15120 Oct 14 02:20 start_atlas.sh
[2025-10-14 04:21:43] drwxrwx--x. 2 boinc boinc        68 Oct 14 02:20 shared
[2025-10-14 04:21:43] -rw-r--r--. 2 boinc boinc    569679 Oct 14 02:20 input.tar.gz
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc         0 Oct 14 02:20 boinc_lockfile
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc      2550 Oct 14 02:20 pandaJob.out
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc    972791 Oct 14 02:22 agis_schedconf.cvmfs.json
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc   1560580 Oct 14 02:22 agis_ddmendpoints.agis.ALL.json
[2025-10-14 04:21:43] drwx------. 5 boinc boinc      4096 Oct 14 02:22 pilot3
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc 200699405 Oct 14 04:19 HITS.46676269._068565.pool.root.1
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc       529 Oct 14 04:19 boinc_task_state.xml
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc      1013 Oct 14 04:19 memory_monitor_summary.json
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc    278979 Oct 14 04:19 log.46676269._068565.job.log.tgz.1
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc      7763 Oct 14 04:20 heartbeat.json
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc        95 Oct 14 04:21 pilot_heartbeat.json
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc      8192 Oct 14 04:21 boinc_mmap_file
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc        27 Oct 14 04:21 wrapper_checkpoint.txt
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc      4819 Oct 14 04:21 pilotlog.txt
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc   1002472 Oct 14 04:21 log.46676269._068565.job.log.1
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc       357 Oct 14 04:21 output.list
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc       620 Oct 14 04:21 runtime_log
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc   1300480 Oct 14 04:21 result.tar.gz
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc      8661 Oct 14 04:21 runtime_log.err
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc       643 Oct 14 04:21 25eMDmB9zR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwDiNDmPCUQNn.diag
[2025-10-14 04:21:43] -rw-r--r--. 1 boinc boinc     20750 Oct 14 04:21 stderr.txt
[2025-10-14 04:21:43] HITS file was successfully produced:
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc 200699405 Oct 14 04:19 shared/HITS.pool.root.1
[2025-10-14 04:21:43]  *** Contents of shared directory: ***
[2025-10-14 04:21:43] total 413700
[2025-10-14 04:21:43] -rw-r--r--. 2 boinc boinc 221035123 Oct 14 02:20 ATLAS.root_0
[2025-10-14 04:21:43] -rw-r--r--. 2 boinc boinc     15120 Oct 14 02:20 start_atlas.sh
[2025-10-14 04:21:43] -rw-r--r--. 2 boinc boinc    569679 Oct 14 02:20 input.tar.gz
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc 200699405 Oct 14 04:19 HITS.pool.root.1
[2025-10-14 04:21:43] -rw-------. 1 boinc boinc   1300480 Oct 14 04:21 result.tar.gz
04:21:45 (728933): run_atlas exited; CPU time 19848.068160
04:21:45 (728933): called boinc_finish(0)

</stderr_txt>
]]>

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