Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:11:06 (2313969): wrapper (7.7.26015): starting
05:11:06 (2313969): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 05:11:06] Arguments: --nthreads 8
[2025-10-12 05:11:06] Threads: 8
[2025-10-12 05:11:06] Checking for CVMFS
[2025-10-12 05:11:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:11:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:11:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:11:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:11:08] 2.13.2.0 128560 115778 199448 151613 0 292 29246065 39288832 8170 16776704 1 72247270 99.564 80424260 35347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:11:08] CVMFS is ok
[2025-10-12 05:11:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:11:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:11:08] Further information can be found at the LHC@home message board.
[2025-10-12 05:11:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:11:08] Checking for apptainer binary...
[2025-10-12 05:11:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:11:08] Running /usr/bin/apptainer --version
[2025-10-12 05:11:09] apptainer version 1.4.3-1.el9
[2025-10-12 05:11:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:11:09] c-211-5.aglt2.org
[2025-10-12 05:11:09] apptainer works
[2025-10-12 05:11:09] Set ATHENA_PROC_NUMBER=8
[2025-10-12 05:11:09] Set ATHENA_CORE_NUMBER=8
[2025-10-12 05:11:09] Starting ATLAS job with PandaID=6839221463
[2025-10-12 05:11:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:40:04 (2313969): BOINC client no longer exists - exiting
05:40:04 (2313969): timer handler: client dead, exiting
06:36:10 (2470492): wrapper (7.7.26015): starting
06:36:10 (2470492): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 06:36:11] Arguments: --nthreads 8
[2025-10-12 06:36:11] Threads: 8
[2025-10-12 06:36:11] This job has been restarted, cleaning up previous attempt
[2025-10-12 06:36:11] Checking for CVMFS
[2025-10-12 06:36:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:36:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:36:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:36:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:36:12] 2.13.2.0 128560 115863 195172 151617 3 105 29346548 39288833 6657 16776704 1 72417137 99.565 80429730 35347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 06:36:12] CVMFS is ok
[2025-10-12 06:36:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:36:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:36:12] Further information can be found at the LHC@home message board.
[2025-10-12 06:36:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:36:12] Checking for apptainer binary...
[2025-10-12 06:36:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:36:12] Running /usr/bin/apptainer --version
[2025-10-12 06:36:12] apptainer version 1.4.3-1.el9
[2025-10-12 06:36:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:36:12] c-211-5.aglt2.org
[2025-10-12 06:36:12] apptainer works
[2025-10-12 06:36:12] Set ATHENA_PROC_NUMBER=8
[2025-10-12 06:36:12] Set ATHENA_CORE_NUMBER=8
[2025-10-12 06:36:12] Starting ATLAS job with PandaID=6839221463
[2025-10-12 06:36:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:23:00]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:23:00] 2025-10-12 13:58:24,230 | INFO     | .. there are 8 such processes running
[2025-10-12 11:23:00] 2025-10-12 13:58:24,399 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 11:23:00] 2025-10-12 13:58:24,411 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1826750000005
[2025-10-12 11:23:00] 2025-10-12 13:58:24,427 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839221463/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,428 | INFO     | extracted standard info from prmon json
[2025-10-12 11:23:00] 2025-10-12 13:58:24,429 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:23:00] 2025-10-12 13:58:24,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:23:00] 2025-10-12 13:58:24,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:23:00] 2025-10-12 13:58:24,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:23:00] 2025-10-12 13:58:24,437 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:23:00] 2025-10-12 13:58:24,458 | INFO     | sum of square deviations: 2334795543.4438667
[2025-10-12 11:23:00] 2025-10-12 13:58:24,460 | INFO     | sum of deviations: -5853016515.32143
[2025-10-12 11:23:00] 2025-10-12 13:58:24,460 | INFO     | mean x: 1760271493.6683674
[2025-10-12 11:23:00] 2025-10-12 13:58:24,460 | INFO     | mean y: 2517006.964285714
[2025-10-12 11:23:00] 2025-10-12 13:58:24,460 | INFO     | -- intersect: 4415279466.110285
[2025-10-12 11:23:00] 2025-10-12 13:58:24,461 | INFO     | intersect: 4415279466.110285
[2025-10-12 11:23:00] 2025-10-12 13:58:24,461 | INFO     | chi2: 2.9809435770186483
[2025-10-12 11:23:00] 2025-10-12 13:58:24,461 | INFO     | sum of square deviations: 2160644203.2984343
[2025-10-12 11:23:00] 2025-10-12 13:58:24,471 | INFO     | sum of deviations: 6505697836.382207
[2025-10-12 11:23:00] 2025-10-12 13:58:24,471 | INFO     | mean x: 1760271341.1727748
[2025-10-12 11:23:00] 2025-10-12 13:58:24,471 | INFO     | mean y: 2527605.9581151833
[2025-10-12 11:23:00] 2025-10-12 13:58:24,472 | INFO     | -- intersect: -5297647887.1800165
[2025-10-12 11:23:00] 2025-10-12 13:58:24,472 | INFO     | intersect: -5297647887.1800165
[2025-10-12 11:23:00] 2025-10-12 13:58:24,472 | INFO     | chi2: 2.3157779913159455
[2025-10-12 11:23:00] 2025-10-12 13:58:24,472 | INFO     | current chi2=2.3157779913159455 (change=22.31392740307951 %)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,472 | INFO     | right removable region: 190
[2025-10-12 11:23:00] 2025-10-12 13:58:24,473 | INFO     | sum of square deviations: 2160624073.2984343
[2025-10-12 11:23:00] 2025-10-12 13:58:24,482 | INFO     | sum of deviations: -44790243023.85342
[2025-10-12 11:23:00] 2025-10-12 13:58:24,483 | INFO     | mean x: 1760271646.1727748
[2025-10-12 11:23:00] 2025-10-12 13:58:24,483 | INFO     | mean y: 2550793.87434555
[2025-10-12 11:23:00] 2025-10-12 13:58:24,483 | INFO     | -- intersect: 36493394247.133865
[2025-10-12 11:23:00] 2025-10-12 13:58:24,483 | INFO     | intersect: 36493394247.133865
[2025-10-12 11:23:00] 2025-10-12 13:58:24,483 | INFO     | chi2: 0.9606695393482816
[2025-10-12 11:23:00] 2025-10-12 13:58:24,483 | INFO     | current chi2=0.9606695393482816 (change=67.77297139219648 %)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,484 | INFO     | sum of square deviations: 1995336490.645167
[2025-10-12 11:23:00] 2025-10-12 13:58:24,489 | INFO     | sum of deviations: -40409285919.19356
[2025-10-12 11:23:00] 2025-10-12 13:58:24,489 | INFO     | mean x: 1760271798.6774194
[2025-10-12 11:23:00] 2025-10-12 13:58:24,490 | INFO     | mean y: 2546677.430107527
[2025-10-12 11:23:00] 2025-10-12 13:58:24,490 | INFO     | -- intersect: 35651334108.39095
[2025-10-12 11:23:00] 2025-10-12 13:58:24,490 | INFO     | intersect: 35651334108.39095
[2025-10-12 11:23:00] 2025-10-12 13:58:24,490 | INFO     | chi2: 0.9296893552008694
[2025-10-12 11:23:00] 2025-10-12 13:58:24,490 | INFO     | current chi2=0.9296893552008694 (change=3.2248533838627984 %)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,490 | INFO     | left removable region: 20
[2025-10-12 11:23:00] 2025-10-12 13:58:24,491 | INFO     | sum of square deviations: 1523431218.094112
[2025-10-12 11:23:00] 2025-10-12 13:58:24,492 | INFO     | sum of deviations: -8837497359.094116
[2025-10-12 11:23:00] 2025-10-12 13:58:24,496 | INFO     | mean x: 1760271920.6941175
[2025-10-12 11:23:00] 2025-10-12 13:58:24,496 | INFO     | mean y: 2538608.305882353
[2025-10-12 11:23:00] 2025-10-12 13:58:24,497 | INFO     | -- intersect: 10213960210.840467
[2025-10-12 11:23:00] 2025-10-12 13:58:24,497 | INFO     | intersect: 10213960210.840467
[2025-10-12 11:23:00] 2025-10-12 13:58:24,497 | INFO     | chi2: 0.10887547832757893
[2025-10-12 11:23:00] 2025-10-12 13:58:24,497 | INFO     | -- intersect: 10213960210.840467
[2025-10-12 11:23:00] 2025-10-12 13:58:24,497 | INFO     | current memory leak: -5.80 B/s (using 170 data points, chi2=0.11)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,498 | INFO     | could have reported an average CPU frequency of 2600 MHz (10 samples)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,498 | INFO     | ..............................
[2025-10-12 11:23:00] 2025-10-12 13:58:24,498 | INFO     | . Timing measurements:
[2025-10-12 11:23:00] 2025-10-12 13:58:24,498 | INFO     | . get job = 0 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | . initial setup = 2 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | . payload setup = 34 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | . stage-in = 0 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | . payload execution = 11942 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | . stage-out = 4 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | . log creation = 0 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,499 | INFO     | ..............................
[2025-10-12 11:23:00] 2025-10-12 13:58:24,786 | INFO     | 
[2025-10-12 11:23:00] 2025-10-12 13:58:24,786 | INFO     | job summary report
[2025-10-12 11:23:00] 2025-10-12 13:58:24,786 | INFO     | --------------------------------------------------
[2025-10-12 11:23:00] 2025-10-12 13:58:24,786 | INFO     | PanDA job id: 6839221463
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | task id: 46676269
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | errors: (none)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | pilot state: finished 
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | transexitcode: 0
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | exeerrorcode: 0
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | exeerrordiag: 
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | exitcode: 0
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | exitmsg: OK
[2025-10-12 11:23:00] 2025-10-12 13:58:24,787 | INFO     | cpuconsumptiontime: 50374 s
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | nevents: 400
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | neventsw: 0
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | pid: 2482546
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | pgrp: 2482546
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | corecount: 8
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | event service: False
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | sizes: {0: 2348630, 1: 2348885, 2: 2348885, 12: 2348913, 23: 2348941, 28: 2349231, 34: 2349387, 11980: 2379203, 11981: 2379202, 11986: 2388256, 11990: 2388312, 120
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | --------------------------------------------------
[2025-10-12 11:23:00] 2025-10-12 13:58:24,788 | INFO     | 
[2025-10-12 11:23:00] 2025-10-12 13:58:24,789 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 11:23:00] 2025-10-12 13:58:24,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | job 6839221463 has completed (purged errors)
[2025-10-12 11:23:00] 2025-10-12 13:58:24,885 | INFO     | overall cleanup function is called
[2025-10-12 11:23:00] 2025-10-12 13:58:25,911 | INFO     | --- collectZombieJob: --- 10, [2482546]
[2025-10-12 11:23:00] 2025-10-12 13:58:25,923 | INFO     | zombie collector waiting for pid 2482546
[2025-10-12 11:23:00] 2025-10-12 13:58:25,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:23:00] 2025-10-12 13:58:25,924 | INFO     | collected zombie processes
[2025-10-12 11:23:00] 2025-10-12 13:58:25,924 | INFO     | will attempt to kill all subprocesses of pid=2482546
[2025-10-12 11:23:00] 2025-10-12 13:58:26,990 | INFO     | process IDs to be killed: [2482546] (in reverse order)
[2025-10-12 11:23:00] 2025-10-12 13:58:27,194 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:23:00] 2025-10-12 13:58:27,194 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:23:00] 2025-10-12 13:58:27,231 | INFO     | did not find any defunct processes belonging to 2482546
[2025-10-12 11:23:00] 2025-10-12 13:58:27,260 | INFO     | did not find any defunct processes belonging to 2482546
[2025-10-12 11:23:00] 2025-10-12 13:58:27,261 | INFO     | ready for new job
[2025-10-12 11:23:00] 2025-10-12 13:58:27,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:23:00] 2025-10-12 13:58:27,263 | INFO     | ***************************************
[2025-10-12 11:23:00] 2025-10-12 13:58:27,264 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:23:00] 2025-10-12 13:58:27,264 | INFO     | ***************************************
[2025-10-12 11:23:00] 2025-10-12 13:58:27,264 | INFO     | 
[2025-10-12 11:23:00] 2025-10-12 13:58:27,275 | INFO     | architecture information:
[2025-10-12 11:23:00] 2025-10-12 13:58:27,289 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:23:00] 2025-10-12 13:58:27,341 | INFO     | cat /etc/os-release:
[2025-10-12 11:23:00] NAME="CentOS Linux"
[2025-10-12 11:23:00] VERSION="7 (Core)"
[2025-10-12 11:23:00] ID="centos"
[2025-10-12 11:23:00] ID_LIKE="rhel fedora"
[2025-10-12 11:23:00] VERSION_ID="7"
[2025-10-12 11:23:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:23:00] ANSI_COLOR="0;31"
[2025-10-12 11:23:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:23:00] HOME_URL="https://www.centos.org/"
[2025-10-12 11:23:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:23:00] 
[2025-10-12 11:23:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:23:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:23:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:23:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:23:00] 
[2025-10-12 11:23:00] 2025-10-12 13:58:27,342 | INFO     | ***************************************
[2025-10-12 11:23:00] 2025-10-12 13:58:27,847 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 11:23:00] 2025-10-12 13:58:27,933 | INFO     | sufficient remaining disk space (52250542080 B)
[2025-10-12 11:23:00] 2025-10-12 13:58:27,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:23:00] 2025-10-12 13:58:27,933 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:23:00] 2025-10-12 13:58:27,933 | INFO     | update_server=False
[2025-10-12 11:23:00] 2025-10-12 13:58:27,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:23:00] 2025-10-12 13:58:27,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:23:00] 2025-10-12 13:58:27,987 | INFO     | all payload control threads have been joined
[2025-10-12 11:23:00] 2025-10-12 13:58:28,278 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 11:23:00] 2025-10-12 13:58:28,279 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 11:23:00] 2025-10-12 13:58:28,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:23:00] 2025-10-12 13:58:28,279 | INFO     | will abort loop
[2025-10-12 11:23:00] 2025-10-12 13:58:28,407 | INFO     | all data control threads have been joined
[2025-10-12 11:23:00] 2025-10-12 13:58:28,939 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:28,993 | INFO     | [payload] control thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:29,116 | INFO     | all job control threads have been joined
[2025-10-12 11:23:00] 2025-10-12 13:58:29,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:23:00] 2025-10-12 13:58:29,285 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:29,373 | INFO     | [job] validate thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:29,414 | INFO     | [data] control thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:29,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:23:00] 2025-10-12 13:58:29,866 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:29,867 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:29,940 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,035 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,044 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,053 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,122 | INFO     | [job] control thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,191 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:30,806 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:33,149 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:23:00] 2025-10-12 13:58:57,414 | INFO     | PID=2474335 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 11:23:00] 2025-10-12 13:58:57,419 | INFO     | .. there are 8 such processes running
[2025-10-12 11:23:00] 2025-10-12 13:58:57,420 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:23:00] 2025-10-12 13:58:57,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:23:00] 2025-10-12 13:58:57,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:23:00] 2025-10-12 13:59:23,637 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:23:00] 2025-10-12 13:59:23,876 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295633524544)>', '<ExcThread(monitor, started 140294762784512)>']
[2025-10-12 11:23:00] 2025-10-12 13:59:24,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:23:00] 2025-10-12 13:59:24,582 | INFO     | [monitor] control thread has ended
[2025-10-12 11:23:00] 2025-10-12 13:59:28,901 | INFO     | all workflow threads have been joined
[2025-10-12 11:23:00] 2025-10-12 13:59:28,901 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:23:00] 2025-10-12 13:59:28,902 | INFO     | traces error code: 0
[2025-10-12 11:23:00] 2025-10-12 13:59:28,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:23:00] 2025-10-12 13:59:29,412 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:23:00] 2025-10-12 13:59:29,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:23:00] 2025-10-12 13:59:29,468 [wrapper] pilotpid: 2474335
[2025-10-12 11:23:00] 2025-10-12 13:59:29,494 [wrapper] Pilot exit status: 0
[2025-10-12 11:23:00] 2025-10-12 13:59:29,574 [wrapper] pandaids: 6839221463 6839221463
[2025-10-12 11:23:00] 2025-10-12 13:59:29,680 [wrapper] cleanup supervisor_pilot 2791986 2474336
[2025-10-12 11:23:00] 2025-10-12 13:59:29,684 [wrapper] Test setup, not cleaning
[2025-10-12 11:23:00] 2025-10-12 13:59:29,687 [wrapper] apfmon messages muted
[2025-10-12 11:23:00] 2025-10-12 13:59:29,689 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:23:00] 2025-10-12 13:59:29,693 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:23:00]  *** Error codes and diagnostics ***
[2025-10-12 11:23:00]     "exeErrorCode": 0,
[2025-10-12 11:23:00]     "exeErrorDiag": "",
[2025-10-12 11:23:00]     "pilotErrorCode": 0,
[2025-10-12 11:23:00]     "pilotErrorDiag": "",
[2025-10-12 11:23:00]  *** Listing of results directory ***
[2025-10-12 11:23:00] total 628020
[2025-10-12 11:23:00] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 21:26 pilot3.tar.gz
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 21:30 queuedata.json
[2025-10-12 11:23:00] -rwx------. 1 boincer umatlas     36292 Oct 11 21:30 runpilot2-wrapper.sh
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas       100 Oct 12 05:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:23:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 05:11 run_atlas
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas       105 Oct 12 05:11 job.xml
[2025-10-12 11:23:00] -rw-r--r--. 3 boincer umatlas 218651933 Oct 12 05:11 EVNT.46676267._003150.pool.root.1
[2025-10-12 11:23:00] -rw-r--r--. 3 boincer umatlas 218651933 Oct 12 05:11 ATLAS.root_0
[2025-10-12 11:23:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:11 start_atlas.sh
[2025-10-12 11:23:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 05:11 shared
[2025-10-12 11:23:00] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 05:11 input.tar.gz
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas         0 Oct 12 05:11 boinc_lockfile
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 06:36 pandaJob.out
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas    975520 Oct 12 06:37 agis_schedconf.cvmfs.json
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas 197681929 Oct 12 09:56 HITS.46676269._068548.pool.root.1
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas       530 Oct 12 09:56 boinc_task_state.xml
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas      1040 Oct 12 09:57 memory_monitor_summary.json
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas   1560580 Oct 12 09:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas    442716 Oct 12 09:57 log.46676269._068548.job.log.tgz.1
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas      7825 Oct 12 09:58 heartbeat.json
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas        97 Oct 12 09:58 pilot_heartbeat.json
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas      5009 Oct 12 09:59 pilotlog.txt
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas   1658005 Oct 12 09:59 log.46676269._068548.job.log.1
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas       357 Oct 12 09:59 output.list
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:59 runtime_log
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas   2119680 Oct 12 09:59 result.tar.gz
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas       779 Oct 12 09:59 XU5NDmF6zR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqCiNDmi8HOim.diag
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas      8784 Oct 12 09:59 runtime_log.err
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas      6658 Oct 12 11:19 init_data.xml
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 11:23 boinc_mmap_file
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas        27 Oct 12 11:23 wrapper_checkpoint.txt
[2025-10-12 11:23:00] -rw-r--r--. 1 boincer umatlas     23480 Oct 12 11:23 stderr.txt
[2025-10-12 11:23:00] HITS file was successfully produced:
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas 197681929 Oct 12 09:56 shared/HITS.pool.root.1
[2025-10-12 11:23:00]  *** Contents of shared directory: ***
[2025-10-12 11:23:00] total 409232
[2025-10-12 11:23:00] -rw-r--r--. 3 boincer umatlas 218651933 Oct 12 05:11 ATLAS.root_0
[2025-10-12 11:23:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:11 start_atlas.sh
[2025-10-12 11:23:00] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 05:11 input.tar.gz
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas 197681929 Oct 12 09:56 HITS.pool.root.1
[2025-10-12 11:23:00] -rw-------. 1 boincer umatlas   2119680 Oct 12 09:59 result.tar.gz
11:23:02 (2470492): run_atlas exited; CPU time 50622.999879
11:23:02 (2470492): called boinc_finish(0)

</stderr_txt>
]]>

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