Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:28:43 (3441035): wrapper (7.7.26015): starting
17:28:43 (3441035): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 17:28:43] Arguments: --nthreads 6
[2025-10-12 17:28:43] Threads: 6
[2025-10-12 17:28:43] Checking for CVMFS
[2025-10-12 17:28:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:28:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:28:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:28:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:28:44] 2.11.5.0 3651556 4059 73676 151613 0 188 38663236 52428801 1858 130560 0 12581484 99.998 136659 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 17:28:44] CVMFS is ok
[2025-10-12 17:28:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:28:44] Checking for apptainer binary...
[2025-10-12 17:28:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:28:44] Running /usr/bin/apptainer --version
[2025-10-12 17:28:44] apptainer version 1.3.5-1.el9
[2025-10-12 17:28:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:28:44] testio008
[2025-10-12 17:28:44] apptainer works
[2025-10-12 17:28:44] Set ATHENA_PROC_NUMBER=6
[2025-10-12 17:28:44] Set ATHENA_CORE_NUMBER=6
[2025-10-12 17:28:44] Starting ATLAS job with PandaID=6839221063
[2025-10-12 17:28:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:36:10]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:36:10] 2025-10-12 09:35:12,189 | INFO     | transferring file log.46676269._068387.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6839221063/log.46676269._068387.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 18:36:10] 2025-10-12 09:35:12,189 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6839221063/log.46676269._068387.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._068387.job
[2025-10-12 18:36:10] 2025-10-12 09:35:12,197 | INFO     | adding to output.list: log.46676269._068387.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/cb/log.46676269._068387.job.log.tg
[2025-10-12 18:36:10] 2025-10-12 09:35:12,197 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 18:36:10] 2025-10-12 09:35:12,197 | INFO     | summary of transferred files:
[2025-10-12 18:36:10] 2025-10-12 09:35:12,197 | INFO     |  -- lfn=log.46676269._068387.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 18:36:10] 2025-10-12 09:35:12,197 | INFO     | stage-out finished correctly
[2025-10-12 18:36:10] 2025-10-12 09:35:12,779 | INFO     | time since job start (3976s) is within the limit (172800.0s)
[2025-10-12 18:36:10] 2025-10-12 09:35:13,019 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:36:10] 2025-10-12 09:35:14,782 | INFO     | time since job start (3978s) is within the limit (172800.0s)
[2025-10-12 18:36:10] 2025-10-12 09:35:14,786 | INFO     | job 6839221063 has state=finished
[2025-10-12 18:36:10] 2025-10-12 09:35:14,787 | INFO     | preparing for final server update for job 6839221063 in state='finished'
[2025-10-12 18:36:10] 2025-10-12 09:35:15,882 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 18:36:10] 2025-10-12 09:35:15,882 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:36:10] 2025-10-12 09:35:15,882 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:36:10] 2025-10-12 09:35:15,882 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:36:10] 2025-10-12 09:35:15,882 | INFO     | job 6839221063 has finished - writing final server update
[2025-10-12 18:36:10] 2025-10-12 09:35:15,883 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:36:10] 2025-10-12 09:35:15,883 | INFO     | executing command: lscpu
[2025-10-12 18:36:10] 2025-10-12 09:35:15,893 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:36:10] 2025-10-12 09:35:15,923 | WARNING  | process 3451542 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 18:36:10] 2025-10-12 09:35:15,924 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6839221063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:36:10] 2025-10-12 09:35:15,924 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2727678 B
[2025-10-12 18:36:10] 2025-10-12 09:35:15,924 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-10-12 18:36:10] 2025-10-12 09:35:15,924 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 18:36:10] 2025-10-12 09:35:16,788 | INFO     | time since job start (3980s) is within the limit (172800.0s)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,648 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 18:36:10] 2025-10-12 09:35:17,652 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4092.4823999999994
[2025-10-12 18:36:10] 2025-10-12 09:35:17,654 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6839221063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,654 | INFO     | extracted standard info from prmon json
[2025-10-12 18:36:10] 2025-10-12 09:35:17,654 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:36:10] 2025-10-12 09:35:17,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:36:10] 2025-10-12 09:35:17,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:36:10] 2025-10-12 09:35:17,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:36:10] 2025-10-12 09:35:17,655 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:36:10] 2025-10-12 09:35:17,655 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 18:36:10] 2025-10-12 09:35:17,655 | INFO     | sum of deviations: -2793606935.0
[2025-10-12 18:36:10] 2025-10-12 09:35:17,655 | INFO     | mean x: 1760259798.5
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | mean y: 2539599.3448275863
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | -- intersect: 81305954239.16235
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | intersect: 81305954239.16235
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | chi2: 0.022572154644236914
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | -- intersect: 81305954239.16235
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | current memory leak: -46.19 B/s (using 58 data points, chi2=0.02)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | could have reported an average CPU frequency of 3395 MHz (6 samples)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | ..............................
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . Timing measurements:
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . get job = 0 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . initial setup = 8 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . payload setup = 2 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . stage-in = 0 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . payload execution = 3955 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . stage-out = 0 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | . log creation = 0 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,656 | INFO     | ..............................
[2025-10-12 18:36:10] 2025-10-12 09:35:17,657 | INFO     | sufficient remaining disk space (280527634432 B)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,672 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | 
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | job summary report
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | --------------------------------------------------
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | PanDA job id: 6839221063
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | task id: 46676269
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | errors: (none)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:36:10] 2025-10-12 09:35:17,703 | INFO     | pilot state: finished 
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | transexitcode: 0
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | exeerrorcode: 0
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | exeerrordiag: 
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | exitcode: 0
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | exitmsg: OK
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | cpuconsumptiontime: 21205 s
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | nevents: 400
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | neventsw: 0
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | pid: 3451542
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | pgrp: 3451542
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | corecount: 6
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | event service: False
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 3961: 2375023, 3962: 2384021, 3963: 2384077, 3968: 2384399}
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | --------------------------------------------------
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | 
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6839221063: 3038477 B (within 2537553920 B limit)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6839221063/HITS.46676269._068387.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,704 | INFO     | total size of present files: 0 B (workdir size: 3038477 B)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,705 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6839221063/HITS.46676269._068387.pool.root.1 since it does not exist
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | job 6839221063 has completed (purged errors)
[2025-10-12 18:36:10] 2025-10-12 09:35:17,715 | INFO     | overall cleanup function is called
[2025-10-12 18:36:10] 2025-10-12 09:35:17,744 | INFO     | number of running child processes to parent process 3451542: 1
[2025-10-12 18:36:10] 2025-10-12 09:35:17,744 | INFO     | maximum number of monitored processes: 6
[2025-10-12 18:36:10] 2025-10-12 09:35:17,745 | INFO     | aborting job monitoring since job object (job id=6839221063) has expired
[2025-10-12 18:36:10] 2025-10-12 09:35:18,722 | INFO     | --- collectZombieJob: --- 10, [3451542]
[2025-10-12 18:36:10] 2025-10-12 09:35:18,722 | INFO     | zombie collector waiting for pid 3451542
[2025-10-12 18:36:10] 2025-10-12 09:35:18,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:36:10] 2025-10-12 09:35:18,722 | INFO     | collected zombie processes
[2025-10-12 18:36:10] 2025-10-12 09:35:18,722 | INFO     | will attempt to kill all subprocesses of pid=3451542
[2025-10-12 18:36:10] 2025-10-12 09:35:18,758 | INFO     | process IDs to be killed: [3451542] (in reverse order)
[2025-10-12 18:36:10] 2025-10-12 09:35:18,777 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:36:10] 2025-10-12 09:35:18,777 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:36:10] 2025-10-12 09:35:18,779 | INFO     | did not find any defunct processes belonging to 3451542
[2025-10-12 18:36:10] 2025-10-12 09:35:18,781 | INFO     | did not find any defunct processes belonging to 3451542
[2025-10-12 18:36:10] 2025-10-12 09:35:18,781 | INFO     | ready for new job
[2025-10-12 18:36:10] 2025-10-12 09:35:18,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:36:10] 2025-10-12 09:35:18,781 | INFO     | ***************************************
[2025-10-12 18:36:10] 2025-10-12 09:35:18,782 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:36:10] 2025-10-12 09:35:18,782 | INFO     | ***************************************
[2025-10-12 18:36:10] 2025-10-12 09:35:18,782 | INFO     | 
[2025-10-12 18:36:10] 2025-10-12 09:35:18,782 | INFO     | architecture information:
[2025-10-12 18:36:10] 2025-10-12 09:35:18,782 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:36:10] 2025-10-12 09:35:18,789 | INFO     | cat /etc/os-release:
[2025-10-12 18:36:10] NAME="CentOS Linux"
[2025-10-12 18:36:10] VERSION="7 (Core)"
[2025-10-12 18:36:10] ID="centos"
[2025-10-12 18:36:10] ID_LIKE="rhel fedora"
[2025-10-12 18:36:10] VERSION_ID="7"
[2025-10-12 18:36:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:36:10] ANSI_COLOR="0;31"
[2025-10-12 18:36:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:36:10] HOME_URL="https://www.centos.org/"
[2025-10-12 18:36:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:36:10] 
[2025-10-12 18:36:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:36:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:36:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:36:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:36:10] 
[2025-10-12 18:36:10] 2025-10-12 09:35:18,789 | INFO     | ***************************************
[2025-10-12 18:36:10] 2025-10-12 09:35:19,292 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 18:36:10] 2025-10-12 09:35:19,303 | INFO     | sufficient remaining disk space (280530780160 B)
[2025-10-12 18:36:10] 2025-10-12 09:35:19,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:36:10] 2025-10-12 09:35:19,303 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:36:10] 2025-10-12 09:35:19,304 | INFO     | update_server=False
[2025-10-12 18:36:10] 2025-10-12 09:35:19,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:36:10] 2025-10-12 09:35:19,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:36:10] 2025-10-12 09:35:19,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:36:10] 2025-10-12 09:35:19,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:36:10] 2025-10-12 09:35:19,304 | INFO     | aborting loop
[2025-10-12 18:36:10] 2025-10-12 09:35:19,509 | INFO     | all payload control threads have been joined
[2025-10-12 18:36:10] 2025-10-12 09:35:20,019 | INFO     | all data control threads have been joined
[2025-10-12 18:36:10] 2025-10-12 09:35:20,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:36:10] 2025-10-12 09:35:20,309 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,309 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,309 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,510 | INFO     | [payload] control thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,514 | INFO     | all job control threads have been joined
[2025-10-12 18:36:10] 2025-10-12 09:35:20,615 | INFO     | [job] validate thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,739 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,740 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:20,974 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:21,024 | INFO     | [data] control thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:21,238 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:21,415 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:21,520 | INFO     | [job] control thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:21,903 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:22,259 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:23,309 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:30,074 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:36:10] 2025-10-12 09:35:31,079 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:36:10] 2025-10-12 09:35:49,923 | INFO     | PID=3444811 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:36:10] 2025-10-12 09:35:49,924 | INFO     | .. there are 3 such processes running
[2025-10-12 18:36:10] 2025-10-12 09:35:49,924 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:36:10] 2025-10-12 09:35:49,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:36:10] 2025-10-12 09:35:49,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:36:10] 2025-10-12 09:36:02,903 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:36:10] 2025-10-12 09:36:05,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809804314432)>', '<ExcThread(monitor, started 139809163044608)>']
[2025-10-12 18:36:10] 2025-10-12 09:36:06,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:36:10] 2025-10-12 09:36:06,004 | INFO     | [monitor] control thread has ended
[2025-10-12 18:36:10] 2025-10-12 09:36:10,037 | INFO     | all workflow threads have been joined
[2025-10-12 18:36:10] 2025-10-12 09:36:10,037 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:36:10] 2025-10-12 09:36:10,038 | INFO     | traces error code: 0
[2025-10-12 18:36:10] 2025-10-12 09:36:10,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:36:10] 2025-10-12 09:36:10,085 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:36:10] 2025-10-12 09:36:10,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:36:10] 2025-10-12 09:36:10,087 [wrapper] pilotpid: 3444811
[2025-10-12 18:36:10] 2025-10-12 09:36:10,088 [wrapper] Pilot exit status: 0
[2025-10-12 18:36:10] 2025-10-12 09:36:10,096 [wrapper] pandaids: 6839221063
[2025-10-12 18:36:10] 2025-10-12 09:36:10,107 [wrapper] cleanup supervisor_pilot 3509353 3444812
[2025-10-12 18:36:10] 2025-10-12 09:36:10,108 [wrapper] Test setup, not cleaning
[2025-10-12 18:36:10] 2025-10-12 09:36:10,109 [wrapper] apfmon messages muted
[2025-10-12 18:36:10] 2025-10-12 09:36:10,110 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:36:10] 2025-10-12 09:36:10,111 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:36:10]  *** Error codes and diagnostics ***
[2025-10-12 18:36:10]     "exeErrorCode": 0,
[2025-10-12 18:36:10]     "exeErrorDiag": "",
[2025-10-12 18:36:10]     "pilotErrorCode": 0,
[2025-10-12 18:36:10]     "pilotErrorDiag": "",
[2025-10-12 18:36:10]  *** Listing of results directory ***
[2025-10-12 18:36:10] total 407268
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc    557409 Oct 12 10:26 pilot3.tar.gz
[2025-10-12 18:36:10] -rwx------. 1 boinc boinc     36292 Oct 12 10:28 runpilot2-wrapper.sh
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc      5112 Oct 12 10:28 queuedata.json
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc       100 Oct 12 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:36:10] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 17:28 run_atlas
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc       105 Oct 12 17:28 job.xml
[2025-10-12 18:36:10] -rw-r--r--. 2 boinc boinc    569677 Oct 12 17:28 input.tar.gz
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc      9509 Oct 12 17:28 init_data.xml
[2025-10-12 18:36:10] -rw-r--r--. 2 boinc boinc 222658367 Oct 12 17:28 EVNT.46676267._003142.pool.root.1
[2025-10-12 18:36:10] -rw-r--r--. 2 boinc boinc     15120 Oct 12 17:28 start_atlas.sh
[2025-10-12 18:36:10] drwxrwx--x. 2 boinc boinc        68 Oct 12 17:28 shared
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc         0 Oct 12 17:28 boinc_lockfile
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc      2550 Oct 12 17:28 pandaJob.out
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc    975520 Oct 12 17:28 agis_schedconf.cvmfs.json
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc   1560580 Oct 12 17:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:36:10] drwx------. 5 boinc boinc      4096 Oct 12 17:28 pilot3
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc 188729864 Oct 12 18:34 HITS.46676269._068387.pool.root.1
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc      1021 Oct 12 18:35 memory_monitor_summary.json
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc    281282 Oct 12 18:35 log.46676269._068387.job.log.tgz.1
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc       529 Oct 12 18:35 boinc_task_state.xml
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc      7769 Oct 12 18:35 heartbeat.json
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc      8192 Oct 12 18:35 boinc_mmap_file
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc        27 Oct 12 18:35 wrapper_checkpoint.txt
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc        95 Oct 12 18:35 pilot_heartbeat.json
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc      4896 Oct 12 18:36 pilotlog.txt
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc    598956 Oct 12 18:36 log.46676269._068387.job.log.1
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc       357 Oct 12 18:36 output.list
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc       620 Oct 12 18:36 runtime_log
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc    901120 Oct 12 18:36 result.tar.gz
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc      8661 Oct 12 18:36 runtime_log.err
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc       641 Oct 12 18:36 LvFLDm23zR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKvSMDm9Usebn.diag
[2025-10-12 18:36:10] -rw-r--r--. 1 boinc boinc     22342 Oct 12 18:36 stderr.txt
[2025-10-12 18:36:10] HITS file was successfully produced:
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc 188729864 Oct 12 18:34 shared/HITS.pool.root.1
[2025-10-12 18:36:10]  *** Contents of shared directory: ***
[2025-10-12 18:36:10] total 403204
[2025-10-12 18:36:10] -rw-r--r--. 2 boinc boinc    569677 Oct 12 17:28 input.tar.gz
[2025-10-12 18:36:10] -rw-r--r--. 2 boinc boinc 222658367 Oct 12 17:28 ATLAS.root_0
[2025-10-12 18:36:10] -rw-r--r--. 2 boinc boinc     15120 Oct 12 17:28 start_atlas.sh
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc 188729864 Oct 12 18:34 HITS.pool.root.1
[2025-10-12 18:36:10] -rw-------. 1 boinc boinc    901120 Oct 12 18:36 result.tar.gz
18:36:11 (3441035): run_atlas exited; CPU time 21227.497591
18:36:11 (3441035): called boinc_finish(0)

</stderr_txt>
]]>

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