Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:26:55 (295977): wrapper (7.7.26015): starting
16:26:55 (295977): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 16:26:55] Arguments: --nthreads 4
[2025-10-13 16:26:55] Threads: 4
[2025-10-13 16:26:55] Checking for CVMFS
[2025-10-13 16:26:55] No cvmfs_config command found, will try listing directly
[2025-10-13 16:26:55] CVMFS is ok
[2025-10-13 16:26:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:26:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:26:55] Further information can be found at the LHC@home message board.
[2025-10-13 16:26:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:26:55] Checking for apptainer binary...
[2025-10-13 16:26:55] which: no apptainer in ((null))
[2025-10-13 16:26:55] apptainer is not installed, using version from CVMFS
[2025-10-13 16:26:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:26:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-13 16:26:55] apptainer works
[2025-10-13 16:26:55] Set ATHENA_PROC_NUMBER=4
[2025-10-13 16:26:55] Set ATHENA_CORE_NUMBER=4
[2025-10-13 16:26:55] Starting ATLAS job with PandaID=6839221437
[2025-10-13 16:26:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:08:54 (591438): wrapper (7.7.26015): starting
19:08:54 (591438): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 19:08:54] Arguments: --nthreads 4
[2025-10-13 19:08:54] Threads: 4
[2025-10-13 19:08:54] This job has been restarted, cleaning up previous attempt
[2025-10-13 19:08:54] Checking for CVMFS
[2025-10-13 19:08:54] No cvmfs_config command found, will try listing directly
[2025-10-13 19:08:54] CVMFS is ok
[2025-10-13 19:08:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:08:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:08:54] Further information can be found at the LHC@home message board.
[2025-10-13 19:08:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:08:54] Checking for apptainer binary...
[2025-10-13 19:08:54] which: no apptainer in ((null))
[2025-10-13 19:08:54] apptainer is not installed, using version from CVMFS
[2025-10-13 19:08:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:08:54] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-13 19:08:54] apptainer works
[2025-10-13 19:08:54] Set ATHENA_PROC_NUMBER=4
[2025-10-13 19:08:54] Set ATHENA_CORE_NUMBER=4
[2025-10-13 19:08:54] Starting ATLAS job with PandaID=6839221437
[2025-10-13 19:08:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:52:46]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:52:46] 2025-10-13 19:50:53,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 21:52:46] 2025-10-13 19:50:53,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 21:52:46] 2025-10-13 19:50:53,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 21:52:46] 2025-10-13 19:50:53,911 | INFO     | fitting pss+swap vs Time
[2025-10-13 21:52:46] 2025-10-13 19:50:53,912 | INFO     | sum of square deviations: 1246385306.9937139
[2025-10-13 21:52:46] 2025-10-13 19:50:53,913 | INFO     | sum of deviations: 12225445830.477983
[2025-10-13 21:52:46] 2025-10-13 19:50:53,913 | INFO     | mean x: 1760380199.0062892
[2025-10-13 21:52:46] 2025-10-13 19:50:53,913 | INFO     | mean y: 2295297.522012579
[2025-10-13 21:52:46] 2025-10-13 19:50:53,913 | INFO     | -- intersect: -17264783063.588665
[2025-10-13 21:52:46] 2025-10-13 19:50:53,913 | INFO     | intersect: -17264783063.588665
[2025-10-13 21:52:46] 2025-10-13 19:50:53,913 | INFO     | chi2: 2.021525373009354
[2025-10-13 21:52:46] 2025-10-13 19:50:53,914 | INFO     | sum of square deviations: 1132457894.493509
[2025-10-13 21:52:46] 2025-10-13 19:50:53,914 | INFO     | sum of deviations: 21619618063.246742
[2025-10-13 21:52:46] 2025-10-13 19:50:53,915 | INFO     | mean x: 1760380046.5064936
[2025-10-13 21:52:46] 2025-10-13 19:50:53,915 | INFO     | mean y: 2307528.7532467535
[2025-10-13 21:52:46] 2025-10-13 19:50:53,915 | INFO     | -- intersect: -33604897151.163506
[2025-10-13 21:52:46] 2025-10-13 19:50:53,915 | INFO     | intersect: -33604897151.163506
[2025-10-13 21:52:46] 2025-10-13 19:50:53,915 | INFO     | chi2: 1.2026847567274697
[2025-10-13 21:52:46] 2025-10-13 19:50:53,915 | INFO     | current chi2=1.2026847567274697 (change=40.50607661000629 %)
[2025-10-13 21:52:46] 2025-10-13 19:50:53,916 | INFO     | sum of square deviations: 1025693406.9932907
[2025-10-13 21:52:46] 2025-10-13 19:50:53,916 | INFO     | sum of deviations: 20757820688.57048
[2025-10-13 21:52:46] 2025-10-13 19:50:53,916 | INFO     | mean x: 1760379894.0067115
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | mean y: 2306297.4295302015
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | -- intersect: -35623983132.151505
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | intersect: -35623983132.151505
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | chi2: 1.203371803675637
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | current chi2=1.203371803675637 (change=-0.05712610426997553 %)
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | right removable region: 148
[2025-10-13 21:52:46] 2025-10-13 19:50:53,917 | INFO     | sum of square deviations: 1132457284.493509
[2025-10-13 21:52:46] 2025-10-13 19:50:53,918 | INFO     | sum of deviations: -6349528107.48052
[2025-10-13 21:52:46] 2025-10-13 19:50:53,918 | INFO     | mean x: 1760380351.5064936
[2025-10-13 21:52:46] 2025-10-13 19:50:53,919 | INFO     | mean y: 2319756.9805194805
[2025-10-13 21:52:46] 2025-10-13 19:50:53,919 | INFO     | -- intersect: 9872523847.500444
[2025-10-13 21:52:46] 2025-10-13 19:50:53,919 | INFO     | intersect: 9872523847.500444
[2025-10-13 21:52:46] 2025-10-13 19:50:53,919 | INFO     | chi2: 0.8418163743945902
[2025-10-13 21:52:46] 2025-10-13 19:50:53,919 | INFO     | current chi2=0.8418163743945902 (change=58.3573678750608 %)
[2025-10-13 21:52:46] 2025-10-13 19:50:53,919 | INFO     | sum of square deviations: 1025692186.9932907
[2025-10-13 21:52:46] 2025-10-13 19:50:53,920 | INFO     | sum of deviations: -6758556414.724833
[2025-10-13 21:52:46] 2025-10-13 19:50:53,920 | INFO     | mean x: 1760380504.0067115
[2025-10-13 21:52:46] 2025-10-13 19:50:53,920 | INFO     | mean y: 2320341.724832215
[2025-10-13 21:52:46] 2025-10-13 19:50:53,921 | INFO     | -- intersect: 11601931900.225393
[2025-10-13 21:52:46] 2025-10-13 19:50:53,921 | INFO     | intersect: 11601931900.225393
[2025-10-13 21:52:46] 2025-10-13 19:50:53,921 | INFO     | chi2: 0.8419859114572128
[2025-10-13 21:52:46] 2025-10-13 19:50:53,921 | INFO     | current chi2=0.8419859114572128 (change=-0.020139435128533497 %)
[2025-10-13 21:52:46] 2025-10-13 19:50:53,921 | INFO     | left removable region: 20
[2025-10-13 21:52:46] 2025-10-13 19:50:53,921 | INFO     | sum of square deviations: 650250789.9921875
[2025-10-13 21:52:46] 2025-10-13 19:50:53,922 | INFO     | sum of deviations: 1612472405.203125
[2025-10-13 21:52:46] 2025-10-13 19:50:53,922 | INFO     | mean x: 1760380473.5078125
[2025-10-13 21:52:46] 2025-10-13 19:50:53,922 | INFO     | mean y: 2335246.796875
[2025-10-13 21:52:46] 2025-10-13 19:50:53,922 | INFO     | -- intersect: -4363003450.021721
[2025-10-13 21:52:46] 2025-10-13 19:50:53,922 | INFO     | intersect: -4363003450.021721
[2025-10-13 21:52:46] 2025-10-13 19:50:53,923 | INFO     | chi2: 0.00027213779855189544
[2025-10-13 21:52:46] 2025-10-13 19:50:53,923 | INFO     | -- intersect: -4363003450.021721
[2025-10-13 21:52:46] 2025-10-13 19:50:53,923 | INFO     | current memory leak: 2.48 B/s (using 128 data points, chi2=0.00)
[2025-10-13 21:52:46] 2025-10-13 19:50:53,923 | INFO     | could have reported an average CPU frequency of 2748 MHz (9 samples)
[2025-10-13 21:52:46] 2025-10-13 19:50:53,923 | INFO     | ..............................
[2025-10-13 21:52:46] 2025-10-13 19:50:53,923 | INFO     | . Timing measurements:
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . get job = 0 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . initial setup = 1 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . payload setup = 8 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . stage-in = 0 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . payload execution = 9664 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . stage-out = 1 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | . log creation = 0 s
[2025-10-13 21:52:46] 2025-10-13 19:50:53,924 | INFO     | ..............................
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | 
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | job summary report
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | --------------------------------------------------
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | PanDA job id: 6839221437
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | task id: 46676269
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | errors: (none)
[2025-10-13 21:52:46] 2025-10-13 19:50:54,398 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | pilot state: finished 
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | transexitcode: 0
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | exeerrorcode: 0
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | exeerrordiag: 
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | exitcode: 0
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | exitmsg: OK
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | cpuconsumptiontime: 36746 s
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | nevents: 400
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | neventsw: 0
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | pid: 701714
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | pgrp: 701714
[2025-10-13 21:52:46] 2025-10-13 19:50:54,399 | INFO     | corecount: 4
[2025-10-13 21:52:46] 2025-10-13 19:50:54,400 | INFO     | event service: False
[2025-10-13 21:52:46] 2025-10-13 19:50:54,400 | INFO     | sizes: {0: 2348869, 6: 2349131, 11: 2349159, 9677: 2377910, 9679: 2386932, 9681: 2387176, 9689: 2387562}
[2025-10-13 21:52:46] 2025-10-13 19:50:54,400 | INFO     | --------------------------------------------------
[2025-10-13 21:52:46] 2025-10-13 19:50:54,400 | INFO     | 
[2025-10-13 21:52:46] 2025-10-13 19:50:54,400 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:52:46] 2025-10-13 19:50:54,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,431 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:52:46] 2025-10-13 19:50:54,431 | INFO     | job 6839221437 has completed (purged errors)
[2025-10-13 21:52:46] 2025-10-13 19:50:54,431 | INFO     | overall cleanup function is called
[2025-10-13 21:52:46] 2025-10-13 19:50:55,440 | INFO     | --- collectZombieJob: --- 10, [701714]
[2025-10-13 21:52:46] 2025-10-13 19:50:55,440 | INFO     | zombie collector waiting for pid 701714
[2025-10-13 21:52:46] 2025-10-13 19:50:55,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:52:46] 2025-10-13 19:50:55,440 | INFO     | collected zombie processes
[2025-10-13 21:52:46] 2025-10-13 19:50:55,440 | INFO     | will attempt to kill all subprocesses of pid=701714
[2025-10-13 21:52:46] 2025-10-13 19:50:56,225 | INFO     | process IDs to be killed: [701714] (in reverse order)
[2025-10-13 21:52:46] 2025-10-13 19:50:56,479 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:52:46] 2025-10-13 19:50:56,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:52:46] 2025-10-13 19:50:56,510 | INFO     | did not find any defunct processes belonging to 701714
[2025-10-13 21:52:46] 2025-10-13 19:50:56,539 | INFO     | did not find any defunct processes belonging to 701714
[2025-10-13 21:52:46] 2025-10-13 19:50:56,539 | INFO     | ready for new job
[2025-10-13 21:52:46] 2025-10-13 19:50:56,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:52:46] 2025-10-13 19:50:56,542 | INFO     | ***************************************
[2025-10-13 21:52:46] 2025-10-13 19:50:56,542 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:52:46] 2025-10-13 19:50:56,542 | INFO     | ***************************************
[2025-10-13 21:52:46] 2025-10-13 19:50:56,542 | INFO     | 
[2025-10-13 21:52:46] 2025-10-13 19:50:56,550 | INFO     | architecture information:
[2025-10-13 21:52:46] 2025-10-13 19:50:56,550 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:52:46] 2025-10-13 19:50:56,570 | INFO     | cat /etc/os-release:
[2025-10-13 21:52:46] NAME="CentOS Linux"
[2025-10-13 21:52:46] VERSION="7 (Core)"
[2025-10-13 21:52:46] ID="centos"
[2025-10-13 21:52:46] ID_LIKE="rhel fedora"
[2025-10-13 21:52:46] VERSION_ID="7"
[2025-10-13 21:52:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:52:46] ANSI_COLOR="0;31"
[2025-10-13 21:52:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:52:46] HOME_URL="https://www.centos.org/"
[2025-10-13 21:52:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:52:46] 
[2025-10-13 21:52:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:52:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:52:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:52:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:52:46] 
[2025-10-13 21:52:46] 2025-10-13 19:50:56,570 | INFO     | ***************************************
[2025-10-13 21:52:46] 2025-10-13 19:50:57,073 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-10-13 21:52:46] 2025-10-13 19:50:57,097 | INFO     | sufficient remaining disk space (3340279742464 B)
[2025-10-13 21:52:46] 2025-10-13 19:50:57,097 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:52:46] 2025-10-13 19:50:57,097 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:52:46] 2025-10-13 19:50:57,097 | INFO     | update_server=False
[2025-10-13 21:52:46] 2025-10-13 19:50:57,097 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:52:46] 2025-10-13 19:50:57,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:52:46] 2025-10-13 19:50:57,202 | INFO     | all payload control threads have been joined
[2025-10-13 21:52:46] 2025-10-13 19:50:57,584 | INFO     | all data control threads have been joined
[2025-10-13 21:52:46] 2025-10-13 19:50:57,708 | INFO     | all job control threads have been joined
[2025-10-13 21:52:46] 2025-10-13 19:50:57,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:52:46] 2025-10-13 19:50:57,825 | INFO     | aborting loop
[2025-10-13 21:52:46] 2025-10-13 19:50:58,102 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,207 | INFO     | [payload] control thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,306 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,311 | INFO     | [job] validate thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,387 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,590 | INFO     | [data] control thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,714 | INFO     | [job] control thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,815 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,830 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:58,932 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:59,012 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:59,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:52:46] 2025-10-13 19:50:59,103 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:50:59,342 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:51:00,044 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:51:00,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:52:46] 2025-10-13 19:51:04,361 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:52:46] 2025-10-13 19:51:22,590 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:52:46] 2025-10-13 19:51:24,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23208074262336)>', '<ExcThread(monitor, started 23207836870400)>']
[2025-10-13 21:52:46] 2025-10-13 19:51:26,932 | INFO     | PID=622585 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 21:52:46] 2025-10-13 19:51:26,932 | INFO     | .. there are 9 such processes running
[2025-10-13 21:52:46] 2025-10-13 19:51:26,933 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:52:46] 2025-10-13 19:51:26,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:52:46] 2025-10-13 19:51:26,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:52:46] 2025-10-13 19:51:26,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:52:46] 2025-10-13 19:51:26,933 | INFO     | [monitor] control thread has ended
[2025-10-13 21:52:46] 2025-10-13 19:51:29,120 | INFO     | all workflow threads have been joined
[2025-10-13 21:52:46] 2025-10-13 19:51:29,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:52:46] 2025-10-13 19:51:29,120 | INFO     | traces error code: 0
[2025-10-13 21:52:46] 2025-10-13 19:51:29,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:52:46] 2025-10-13 19:51:29,255 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:52:46] 2025-10-13 19:51:29,258 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:52:46] 2025-10-13 19:51:29,262 [wrapper] pilotpid: 622585
[2025-10-13 21:52:46] 2025-10-13 19:51:29,268 [wrapper] Pilot exit status: 0
[2025-10-13 21:52:46] 2025-10-13 19:51:29,281 [wrapper] pandaids: 6839221437 6839221437
[2025-10-13 21:52:46] 2025-10-13 19:51:29,453 [wrapper] cleanup supervisor_pilot 1180187 622586
[2025-10-13 21:52:46] 2025-10-13 19:51:29,457 [wrapper] Test setup, not cleaning
[2025-10-13 21:52:46] 2025-10-13 19:51:29,461 [wrapper] apfmon messages muted
[2025-10-13 21:52:46] 2025-10-13 19:51:29,464 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:52:46] 2025-10-13 19:51:29,468 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:52:46]  *** Error codes and diagnostics ***
[2025-10-13 21:52:46]     "exeErrorCode": 0,
[2025-10-13 21:52:46]     "exeErrorDiag": "",
[2025-10-13 21:52:46]     "pilotErrorCode": 0,
[2025-10-13 21:52:46]     "pilotErrorDiag": "",
[2025-10-13 21:52:46]  *** Listing of results directory ***
[2025-10-13 21:52:46] total 627692
[2025-10-13 21:52:46] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:26 pilot3.tar.gz
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:28 queuedata.json
[2025-10-13 21:52:46] -rwx------ 1 boinc boinc     36292 Oct 12 03:29 runpilot2-wrapper.sh
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc       100 Oct 13 16:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:52:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 16:26 run_atlas
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc       105 Oct 13 16:26 job.xml
[2025-10-13 21:52:46] -rw-r--r-- 3 boinc boinc 218589336 Oct 13 16:26 EVNT.46676267._003149.pool.root.1
[2025-10-13 21:52:46] -rw-r--r-- 3 boinc boinc 218589336 Oct 13 16:26 ATLAS.root_0
[2025-10-13 21:52:46] drwxrwx--x 2 boinc boinc      4096 Oct 13 16:26 shared
[2025-10-13 21:52:46] -rw-r--r-- 2 boinc boinc    569678 Oct 13 16:26 input.tar.gz
[2025-10-13 21:52:46] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:26 start_atlas.sh
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:26 boinc_lockfile
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc      6693 Oct 13 19:08 init_data.xml
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:08 pandaJob.out
[2025-10-13 21:52:46] -rw------- 1 boinc boinc    972783 Oct 13 19:09 agis_schedconf.cvmfs.json
[2025-10-13 21:52:46] -rw------- 1 boinc boinc 198272230 Oct 13 21:50 HITS.46676269._068522.pool.root.1
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc       530 Oct 13 21:50 boinc_task_state.xml
[2025-10-13 21:52:46] -rw------- 1 boinc boinc      1026 Oct 13 21:50 memory_monitor_summary.json
[2025-10-13 21:52:46] -rw------- 1 boinc boinc   1560580 Oct 13 21:50 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:52:46] -rw------- 1 boinc boinc        97 Oct 13 21:50 pilot_heartbeat.json
[2025-10-13 21:52:46] -rw------- 1 boinc boinc    347259 Oct 13 21:50 log.46676269._068522.job.log.tgz.1
[2025-10-13 21:52:46] -rw------- 1 boinc boinc      7794 Oct 13 21:50 heartbeat.json
[2025-10-13 21:52:46] -rw------- 1 boinc boinc      4834 Oct 13 21:51 pilotlog.txt
[2025-10-13 21:52:46] -rw------- 1 boinc boinc   1350372 Oct 13 21:51 log.46676269._068522.job.log.1
[2025-10-13 21:52:46] -rw------- 1 boinc boinc       357 Oct 13 21:51 output.list
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:51 runtime_log
[2025-10-13 21:52:46] -rw------- 1 boinc boinc   1720320 Oct 13 21:51 result.tar.gz
[2025-10-13 21:52:46] -rw------- 1 boinc boinc       788 Oct 13 21:51 wh6NDmG5zR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkvSMDmPbcfUo.diag
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc      9161 Oct 13 21:51 runtime_log.err
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc        27 Oct 13 21:52 wrapper_checkpoint.txt
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:52 boinc_mmap_file
[2025-10-13 21:52:46] -rw-r--r-- 1 boinc boinc     22653 Oct 13 21:52 stderr.txt
[2025-10-13 21:52:46] HITS file was successfully produced:
[2025-10-13 21:52:46] -rw------- 1 boinc boinc 198272230 Oct 13 21:50 shared/HITS.pool.root.1
[2025-10-13 21:52:46]  *** Contents of shared directory: ***
[2025-10-13 21:52:46] total 409360
[2025-10-13 21:52:46] -rw-r--r-- 3 boinc boinc 218589336 Oct 13 16:26 ATLAS.root_0
[2025-10-13 21:52:46] -rw-r--r-- 2 boinc boinc    569678 Oct 13 16:26 input.tar.gz
[2025-10-13 21:52:46] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:26 start_atlas.sh
[2025-10-13 21:52:46] -rw------- 1 boinc boinc 198272230 Oct 13 21:50 HITS.pool.root.1
[2025-10-13 21:52:46] -rw------- 1 boinc boinc   1720320 Oct 13 21:51 result.tar.gz
21:52:47 (591438): run_atlas exited; CPU time 37374.662193
21:52:47 (591438): called boinc_finish(0)

</stderr_txt>
]]>

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