Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:56:21 (3913725): wrapper (7.7.26015): starting
12:56:21 (3913725): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:56:21] Arguments: --nthreads 12
[2025-10-12 12:56:21] Threads: 12
[2025-10-12 12:56:21] Checking for CVMFS
[2025-10-12 12:56:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:56:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:56:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:56:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:56:21] 2.13.2.0 8715 28956 234004 151617 1 188 40249644 46080001 5617 130560 0 194772099 99.887 56029965 21596 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-12 12:56:21] CVMFS is ok
[2025-10-12 12:56:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:56:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:56:21] Further information can be found at the LHC@home message board.
[2025-10-12 12:56:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:56:21] Checking for apptainer binary...
[2025-10-12 12:56:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:56:21] Running /usr/bin/apptainer --version
[2025-10-12 12:56:21] apptainer version 1.4.2-1.el9
[2025-10-12 12:56:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:56:21] mff2104.farm.particle.cz
[2025-10-12 12:56:21] apptainer works
[2025-10-12 12:56:21] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:56:21] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:56:21] Starting ATLAS job with PandaID=6838772117
[2025-10-12 12:56:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:52:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:52:42]  surl=/scratch/.boinc/slots/4/PanDA_Pilot-6838772117/log.46676269._062178.job.log.tgz.1
[2025-10-12 13:52:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/7a/log.46676269._062178.job.log.tgz.1
[2025-10-12 13:52:42]  workdir=None
[2025-10-12 13:52:42] ]
[2025-10-12 13:52:42] 2025-10-12 11:51:51,997 | INFO     | transferring file log.46676269._062178.job.log.tgz.1 from /scratch/.boinc/slots/4/PanDA_Pilot-6838772117/log.46676269._062178.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-12 13:52:42] 2025-10-12 11:51:51,997 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/4/PanDA_Pilot-6838772117/log.46676269._062178.job.log.tgz.1 /scratch/.boinc/slots/4/log.46676269._062178.j
[2025-10-12 13:52:42] 2025-10-12 11:51:52,021 | INFO     | adding to output.list: log.46676269._062178.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/7a/log.46676269._062178.job.log.tg
[2025-10-12 13:52:42] 2025-10-12 11:51:52,022 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:52:42] 2025-10-12 11:51:52,022 | INFO     | summary of transferred files:
[2025-10-12 13:52:42] 2025-10-12 11:51:52,022 | INFO     |  -- lfn=log.46676269._062178.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:52:42] 2025-10-12 11:51:52,022 | INFO     | stage-out finished correctly
[2025-10-12 13:52:42] 2025-10-12 11:51:52,503 | INFO     | PID=3917835 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 13:52:42] 2025-10-12 11:51:52,503 | INFO     | .. there are 8 such processes running
[2025-10-12 13:52:42] 2025-10-12 11:51:52,815 | INFO     | monitor loop #243: job 0:6838772117 is in state 'finished'
[2025-10-12 13:52:42] 2025-10-12 11:51:52,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:52:42] 2025-10-12 11:51:53,503 | INFO     | time since job start (3322s) is within the limit (172800.0s)
[2025-10-12 13:52:42] 2025-10-12 11:51:54,121 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:52:42] 2025-10-12 11:51:55,317 | INFO     | monitor loop #244: job 0:6838772117 is in state 'finished'
[2025-10-12 13:52:42] 2025-10-12 11:51:55,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:52:42] 2025-10-12 11:51:55,509 | INFO     | time since job start (3324s) is within the limit (172800.0s)
[2025-10-12 13:52:42] 2025-10-12 11:51:55,803 | INFO     | job 6838772117 has state=finished
[2025-10-12 13:52:42] 2025-10-12 11:51:55,803 | INFO     | preparing for final server update for job 6838772117 in state='finished'
[2025-10-12 13:52:42] 2025-10-12 11:51:55,804 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:52:42] 2025-10-12 11:51:55,804 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:52:42] 2025-10-12 11:51:55,804 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:52:42] 2025-10-12 11:51:55,804 | INFO     | job 6838772117 has finished - writing final server update
[2025-10-12 13:52:42] 2025-10-12 11:51:55,804 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:52:42] 2025-10-12 11:51:55,805 | INFO     | executing command: lscpu
[2025-10-12 13:52:42] 2025-10-12 11:51:55,882 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:52:42] 2025-10-12 11:51:57,515 | INFO     | time since job start (3326s) is within the limit (172800.0s)
[2025-10-12 13:52:42] 2025-10-12 11:51:57,821 | INFO     | monitor loop #245: job 0:6838772117 is in state 'finished'
[2025-10-12 13:52:42] 2025-10-12 11:51:57,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:52:42] 2025-10-12 11:51:59,521 | INFO     | time since job start (3328s) is within the limit (172800.0s)
[2025-10-12 13:52:42] 2025-10-12 11:51:59,561 | INFO     | 3329s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 13:52:42] 2025-10-12 11:52:00,324 | INFO     | monitor loop #246: job 0:6838772117 is in state 'finished'
[2025-10-12 13:52:42] 2025-10-12 11:52:00,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,769 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 13:52:42] 2025-10-12 11:52:00,783 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2717.280625
[2025-10-12 13:52:42] 2025-10-12 11:52:00,800 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6838772117/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,800 | INFO     | extracted standard info from prmon json
[2025-10-12 13:52:42] 2025-10-12 11:52:00,800 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:52:42] 2025-10-12 11:52:00,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:52:42] 2025-10-12 11:52:00,801 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:52:42] 2025-10-12 11:52:00,801 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:52:42] 2025-10-12 11:52:00,802 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:52:42] 2025-10-12 11:52:00,802 | INFO     | sum of square deviations: 32179208.0
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | sum of deviations: 336355525.00000006
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | mean x: 1760268328.0
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | mean y: 2683001.5319148935
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | -- intersect: -18396650431.575336
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | intersect: -18396650431.575336
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | chi2: 0.000422337444799011
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | -- intersect: -18396650431.575336
[2025-10-12 13:52:42] 2025-10-12 11:52:00,803 | INFO     | current memory leak: 10.45 B/s (using 47 data points, chi2=0.00)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | could have reported an average CPU frequency of 2746 MHz (5 samples)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | ..............................
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . Timing measurements:
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . get job = 0 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . initial setup = 1 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . payload setup = 6 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . stage-in = 0 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . payload execution = 3293 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . stage-out = 0 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | . log creation = 0 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,804 | INFO     | ..............................
[2025-10-12 13:52:42] 2025-10-12 11:52:00,895 | INFO     | 
[2025-10-12 13:52:42] 2025-10-12 11:52:00,895 | INFO     | job summary report
[2025-10-12 13:52:42] 2025-10-12 11:52:00,895 | INFO     | --------------------------------------------------
[2025-10-12 13:52:42] 2025-10-12 11:52:00,895 | INFO     | PanDA job id: 6838772117
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | task id: 46676269
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | errors: (none)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | pilot state: finished 
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | transexitcode: 0
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | exeerrorcode: 0
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | exeerrordiag: 
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | exitcode: 0
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | exitmsg: OK
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | cpuconsumptiontime: 34885 s
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | nevents: 400
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | neventsw: 0
[2025-10-12 13:52:42] 2025-10-12 11:52:00,896 | INFO     | pid: 3929931
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | pgrp: 3929931
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | corecount: 12
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | event service: False
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | sizes: {0: 2347976, 1: 2348833, 6: 2349095, 12: 2349123, 3303: 2374543, 3304: 2383543, 3306: 2383727, 3313: 2383953}
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | --------------------------------------------------
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | 
[2025-10-12 13:52:42] 2025-10-12 11:52:00,897 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,921 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,922 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:52:42] 2025-10-12 11:52:00,923 | INFO     | job 6838772117 has completed (purged errors)
[2025-10-12 13:52:42] 2025-10-12 11:52:00,923 | INFO     | overall cleanup function is called
[2025-10-12 13:52:42] 2025-10-12 11:52:01,932 | INFO     | --- collectZombieJob: --- 10, [3929931]
[2025-10-12 13:52:42] 2025-10-12 11:52:01,932 | INFO     | zombie collector waiting for pid 3929931
[2025-10-12 13:52:42] 2025-10-12 11:52:01,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:52:42] 2025-10-12 11:52:01,932 | INFO     | collected zombie processes
[2025-10-12 13:52:42] 2025-10-12 11:52:01,933 | INFO     | will attempt to kill all subprocesses of pid=3929931
[2025-10-12 13:52:42] 2025-10-12 11:52:02,281 | INFO     | process IDs to be killed: [3929931] (in reverse order)
[2025-10-12 13:52:42] 2025-10-12 11:52:02,362 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:52:42] 2025-10-12 11:52:02,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:52:42] 2025-10-12 11:52:02,373 | INFO     | did not find any defunct processes belonging to 3929931
[2025-10-12 13:52:42] 2025-10-12 11:52:02,384 | INFO     | did not find any defunct processes belonging to 3929931
[2025-10-12 13:52:42] 2025-10-12 11:52:02,384 | INFO     | ready for new job
[2025-10-12 13:52:42] 2025-10-12 11:52:02,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:52:42] 2025-10-12 11:52:02,386 | INFO     | ***************************************
[2025-10-12 13:52:42] 2025-10-12 11:52:02,386 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:52:42] 2025-10-12 11:52:02,386 | INFO     | ***************************************
[2025-10-12 13:52:42] 2025-10-12 11:52:02,386 | INFO     | 
[2025-10-12 13:52:42] 2025-10-12 11:52:02,392 | INFO     | architecture information:
[2025-10-12 13:52:42] 2025-10-12 11:52:02,392 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:52:42] 2025-10-12 11:52:02,411 | INFO     | cat /etc/os-release:
[2025-10-12 13:52:42] NAME="CentOS Linux"
[2025-10-12 13:52:42] VERSION="7 (Core)"
[2025-10-12 13:52:42] ID="centos"
[2025-10-12 13:52:42] ID_LIKE="rhel fedora"
[2025-10-12 13:52:42] VERSION_ID="7"
[2025-10-12 13:52:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:52:42] ANSI_COLOR="0;31"
[2025-10-12 13:52:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:52:42] HOME_URL="https://www.centos.org/"
[2025-10-12 13:52:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:52:42] 
[2025-10-12 13:52:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:52:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:52:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:52:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:52:42] 
[2025-10-12 13:52:42] 2025-10-12 11:52:02,412 | INFO     | ***************************************
[2025-10-12 13:52:42] 2025-10-12 11:52:02,915 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-10-12 13:52:42] 2025-10-12 11:52:02,935 | INFO     | sufficient remaining disk space (1681212309504 B)
[2025-10-12 13:52:42] 2025-10-12 11:52:02,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:52:42] 2025-10-12 11:52:02,935 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:52:42] 2025-10-12 11:52:02,936 | INFO     | update_server=False
[2025-10-12 13:52:42] 2025-10-12 11:52:02,936 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:52:42] 2025-10-12 11:52:02,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:52:42] 2025-10-12 11:52:03,047 | INFO     | all payload control threads have been joined
[2025-10-12 13:52:42] 2025-10-12 11:52:03,058 | INFO     | all data control threads have been joined
[2025-10-12 13:52:42] 2025-10-12 11:52:03,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:52:42] 2025-10-12 11:52:03,832 | INFO     | aborting loop
[2025-10-12 13:52:42] 2025-10-12 11:52:03,937 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,025 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,053 | INFO     | [payload] control thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,063 | INFO     | [data] control thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,217 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,440 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,496 | INFO     | [job] validate thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,537 | INFO     | all job control threads have been joined
[2025-10-12 13:52:42] 2025-10-12 11:52:04,660 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:52:42] 2025-10-12 11:52:04,752 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,785 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,838 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:04,942 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:05,107 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:05,542 | INFO     | [job] control thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:05,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:52:42] 2025-10-12 11:52:06,911 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:08,718 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:52:42] 2025-10-12 11:52:33,042 | INFO     | PID=3917835 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:52:42] 2025-10-12 11:52:33,042 | INFO     | .. there are 8 such processes running
[2025-10-12 13:52:42] 2025-10-12 11:52:33,042 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:52:42] 2025-10-12 11:52:33,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:52:42] 2025-10-12 11:52:33,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:52:42] 2025-10-12 11:52:36,368 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:52:42] 2025-10-12 11:52:36,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763516266304)>', '<ExcThread(monitor, started 139762790819584)>']
[2025-10-12 13:52:42] 2025-10-12 11:52:37,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:52:42] 2025-10-12 11:52:37,063 | INFO     | [monitor] control thread has ended
[2025-10-12 13:52:42] 2025-10-12 11:52:41,621 | INFO     | all workflow threads have been joined
[2025-10-12 13:52:42] 2025-10-12 11:52:41,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:52:42] 2025-10-12 11:52:41,687 | INFO     | traces error code: 0
[2025-10-12 13:52:42] 2025-10-12 11:52:41,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:52:42] 2025-10-12 11:52:41,801 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:52:42] 2025-10-12 11:52:41,806 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:52:42] 2025-10-12 11:52:41,809 [wrapper] pilotpid: 3917835
[2025-10-12 13:52:42] 2025-10-12 11:52:41,812 [wrapper] Pilot exit status: 0
[2025-10-12 13:52:42] 2025-10-12 11:52:41,827 [wrapper] pandaids: 6838772117
[2025-10-12 13:52:42] 2025-10-12 11:52:41,900 [wrapper] cleanup supervisor_pilot 4088255 3917836
[2025-10-12 13:52:42] 2025-10-12 11:52:41,905 [wrapper] Test setup, not cleaning
[2025-10-12 13:52:42] 2025-10-12 11:52:41,908 [wrapper] apfmon messages muted
[2025-10-12 13:52:42] 2025-10-12 11:52:41,912 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:52:42] 2025-10-12 11:52:41,915 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:52:42]  *** Error codes and diagnostics ***
[2025-10-12 13:52:42]     "exeErrorCode": 0,
[2025-10-12 13:52:42]     "exeErrorDiag": "",
[2025-10-12 13:52:42]     "pilotErrorCode": 0,
[2025-10-12 13:52:42]     "pilotErrorDiag": "",
[2025-10-12 13:52:42]  *** Listing of results directory ***
[2025-10-12 13:52:42] total 410644
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc    557409 Oct 11 19:33 pilot3.tar.gz
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc      5112 Oct 11 19:43 queuedata.json
[2025-10-12 13:52:42] -rwx------ 1 boinc boinc     36292 Oct 11 19:44 runpilot2-wrapper.sh
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc       100 Oct 12 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:52:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 12:56 run_atlas
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc       105 Oct 12 12:56 job.xml
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc      6665 Oct 12 12:56 init_data.xml
[2025-10-12 13:52:42] -rw-r--r-- 2 boinc boinc 220522554 Oct 12 12:56 EVNT.46676267._000832.pool.root.1
[2025-10-12 13:52:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 12:56 start_atlas.sh
[2025-10-12 13:52:42] drwxrwx--x 2 boinc boinc      4096 Oct 12 12:56 shared
[2025-10-12 13:52:42] -rw-r--r-- 2 boinc boinc    569681 Oct 12 12:56 input.tar.gz
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 12:56 boinc_lockfile
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc      2548 Oct 12 12:56 pandaJob.out
[2025-10-12 13:52:42] -rw------- 1 boinc boinc    975520 Oct 12 12:56 agis_schedconf.cvmfs.json
[2025-10-12 13:52:42] -rw------- 1 boinc boinc   1560580 Oct 12 12:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:52:42] drwx------ 5 boinc boinc      4096 Oct 12 12:56 pilot3
[2025-10-12 13:52:42] -rw------- 1 boinc boinc 194309421 Oct 12 13:51 HITS.46676269._062178.pool.root.1
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc       530 Oct 12 13:51 boinc_task_state.xml
[2025-10-12 13:52:42] -rw------- 1 boinc boinc        95 Oct 12 13:51 pilot_heartbeat.json
[2025-10-12 13:52:42] -rw------- 1 boinc boinc      1022 Oct 12 13:51 memory_monitor_summary.json
[2025-10-12 13:52:42] -rw------- 1 boinc boinc    380323 Oct 12 13:51 log.46676269._062178.job.log.tgz.1
[2025-10-12 13:52:42] -rw------- 1 boinc boinc      7777 Oct 12 13:52 heartbeat.json
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:52 boinc_mmap_file
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:52 wrapper_checkpoint.txt
[2025-10-12 13:52:42] -rw------- 1 boinc boinc      4826 Oct 12 13:52 pilotlog.txt
[2025-10-12 13:52:42] -rw------- 1 boinc boinc    502034 Oct 12 13:52 log.46676269._062178.job.log.1
[2025-10-12 13:52:42] -rw------- 1 boinc boinc       357 Oct 12 13:52 output.list
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:52 runtime_log
[2025-10-12 13:52:42] -rw------- 1 boinc boinc    901120 Oct 12 13:52 result.tar.gz
[2025-10-12 13:52:42] -rw------- 1 boinc boinc       663 Oct 12 13:52 tMYMDmxosR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQ9gNDmW5nNNn.diag
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc      8764 Oct 12 13:52 runtime_log.err
[2025-10-12 13:52:42] -rw-r--r-- 1 boinc boinc     22410 Oct 12 13:52 stderr.txt
[2025-10-12 13:52:42] HITS file was successfully produced:
[2025-10-12 13:52:42] -rw------- 1 boinc boinc 194309421 Oct 12 13:51 shared/HITS.pool.root.1
[2025-10-12 13:52:42]  *** Contents of shared directory: ***
[2025-10-12 13:52:42] total 406576
[2025-10-12 13:52:42] -rw-r--r-- 2 boinc boinc 220522554 Oct 12 12:56 ATLAS.root_0
[2025-10-12 13:52:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 12:56 start_atlas.sh
[2025-10-12 13:52:42] -rw-r--r-- 2 boinc boinc    569681 Oct 12 12:56 input.tar.gz
[2025-10-12 13:52:42] -rw------- 1 boinc boinc 194309421 Oct 12 13:51 HITS.pool.root.1
[2025-10-12 13:52:42] -rw------- 1 boinc boinc    901120 Oct 12 13:52 result.tar.gz
13:52:43 (3913725): run_atlas exited; CPU time 34937.733806
13:52:43 (3913725): called boinc_finish(0)

</stderr_txt>
]]>

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