Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:58:02 (3713929): wrapper (7.7.26015): starting
07:58:02 (3713929): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 07:58:02] Arguments: --nthreads 4
[2025-10-13 07:58:02] Threads: 4
[2025-10-13 07:58:02] Checking for CVMFS
[2025-10-13 07:58:02] No cvmfs_config command found, will try listing directly
[2025-10-13 07:58:02] CVMFS is ok
[2025-10-13 07:58:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:58:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:58:02] Further information can be found at the LHC@home message board.
[2025-10-13 07:58:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:58:02] Checking for apptainer binary...
[2025-10-13 07:58:02] which: no apptainer in ((null))
[2025-10-13 07:58:02] apptainer is not installed, using version from CVMFS
[2025-10-13 07:58:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:58:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-10-13 07:58:02] apptainer works
[2025-10-13 07:58:02] Set ATHENA_PROC_NUMBER=4
[2025-10-13 07:58:02] Set ATHENA_CORE_NUMBER=4
[2025-10-13 07:58:02] Starting ATLAS job with PandaID=6839220956
[2025-10-13 07:58:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:52:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:52:15] 2025-10-13 08:31:32,188 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6839220956/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,189 | INFO     | extracted standard info from prmon json
[2025-10-13 10:52:15] 2025-10-13 08:31:32,189 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 10:52:15] 2025-10-13 08:31:32,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 10:52:15] 2025-10-13 08:31:32,190 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 10:52:15] 2025-10-13 08:31:32,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 10:52:15] 2025-10-13 08:31:32,193 | INFO     | fitting pss+swap vs Time
[2025-10-13 10:52:15] 2025-10-13 08:31:32,193 | INFO     | sum of square deviations: 1046484737.5
[2025-10-13 10:52:15] 2025-10-13 08:31:32,194 | INFO     | sum of deviations: 11677380944.499998
[2025-10-13 10:52:15] 2025-10-13 08:31:32,194 | INFO     | mean x: 1760339675.5
[2025-10-13 10:52:15] 2025-10-13 08:31:32,194 | INFO     | mean y: 2312439.1
[2025-10-13 10:52:15] 2025-10-13 08:31:32,194 | INFO     | -- intersect: -19640742300.177563
[2025-10-13 10:52:15] 2025-10-13 08:31:32,194 | INFO     | intersect: -19640742300.177563
[2025-10-13 10:52:15] 2025-10-13 08:31:32,195 | INFO     | chi2: 1.304928498952579
[2025-10-13 10:52:15] 2025-10-13 08:31:32,195 | INFO     | sum of square deviations: 945282840.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | sum of deviations: 11372490957.999998
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | mean x: 1760339523.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | mean y: 2311979.5862068967
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | -- intersect: -21175947543.59262
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | intersect: -21175947543.59262
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | chi2: 1.3063136175065087
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | current chi2=1.3063136175065087 (change=-0.10614516849325774 %)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,196 | INFO     | right removable region: 144
[2025-10-13 10:52:15] 2025-10-13 08:31:32,197 | INFO     | sum of square deviations: 945282840.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,197 | INFO     | sum of deviations: -6481871224.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,197 | INFO     | mean x: 1760339828.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,197 | INFO     | mean y: 2339312.2620689655
[2025-10-13 10:52:15] 2025-10-13 08:31:32,197 | INFO     | -- intersect: 12073113891.830563
[2025-10-13 10:52:15] 2025-10-13 08:31:32,198 | INFO     | intersect: 12073113891.830563
[2025-10-13 10:52:15] 2025-10-13 08:31:32,198 | INFO     | chi2: 0.00902876170354045
[2025-10-13 10:52:15] 2025-10-13 08:31:32,198 | INFO     | current chi2=0.00902876170354045 (change=99.30810295653842 %)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,198 | INFO     | sum of square deviations: 850825255.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,199 | INFO     | sum of deviations: -5667292779.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,199 | INFO     | mean x: 1760339980.5
[2025-10-13 10:52:15] 2025-10-13 08:31:32,199 | INFO     | mean y: 2337989.8
[2025-10-13 10:52:15] 2025-10-13 08:31:32,199 | INFO     | -- intersect: 11727850369.040142
[2025-10-13 10:52:15] 2025-10-13 08:31:32,199 | INFO     | intersect: 11727850369.040142
[2025-10-13 10:52:15] 2025-10-13 08:31:32,199 | INFO     | chi2: 0.00886381086711263
[2025-10-13 10:52:15] 2025-10-13 08:31:32,200 | INFO     | current chi2=0.00886381086711263 (change=1.8269486098313759 %)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,200 | INFO     | left removable region: 20
[2025-10-13 10:52:15] 2025-10-13 08:31:32,200 | INFO     | sum of square deviations: 591173875.0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,200 | INFO     | sum of deviations: -3547138196.4999995
[2025-10-13 10:52:15] 2025-10-13 08:31:32,200 | INFO     | mean x: 1760340102.5
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | mean y: 2334962.040322581
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | -- intersect: 10564658299.49916
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | intersect: 10564658299.49916
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | chi2: 0.007798356311343333
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | -- intersect: 10564658299.49916
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | current memory leak: -6.00 B/s (using 124 data points, chi2=0.01)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | could have reported an average CPU frequency of 2701 MHz (9 samples)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,201 | INFO     | ..............................
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . Timing measurements:
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . get job = 0 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . initial setup = 1 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . payload setup = 8 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . stage-in = 0 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . payload execution = 9155 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . stage-out = 0 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | . log creation = 0 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,202 | INFO     | ..............................
[2025-10-13 10:52:15] 2025-10-13 08:31:32,294 | INFO     | 
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | job summary report
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | --------------------------------------------------
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | PanDA job id: 6839220956
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | task id: 46676269
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | errors: (none)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | pilot state: finished 
[2025-10-13 10:52:15] 2025-10-13 08:31:32,295 | INFO     | transexitcode: 0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | exeerrorcode: 0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | exeerrordiag: 
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | exitcode: 0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | exitmsg: OK
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | cpuconsumptiontime: 35110 s
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | nevents: 400
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | neventsw: 0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | pid: 3725906
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | pgrp: 3725906
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | corecount: 4
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | event service: False
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | sizes: {0: 2347979, 1: 2348847, 8: 2349109, 12: 2349137, 9168: 2377777, 9169: 2386799, 9170: 2386983, 9178: 2387241}
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | --------------------------------------------------
[2025-10-13 10:52:15] 2025-10-13 08:31:32,296 | INFO     | 
[2025-10-13 10:52:15] 2025-10-13 08:31:32,297 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2025-10-13 10:52:15] 2025-10-13 08:31:32,324 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,324 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | job 6839220956 has completed (purged errors)
[2025-10-13 10:52:15] 2025-10-13 08:31:32,326 | INFO     | overall cleanup function is called
[2025-10-13 10:52:15] 2025-10-13 08:31:33,335 | INFO     | --- collectZombieJob: --- 10, [3725906]
[2025-10-13 10:52:15] 2025-10-13 08:31:33,339 | INFO     | zombie collector waiting for pid 3725906
[2025-10-13 10:52:15] 2025-10-13 08:31:33,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:52:15] 2025-10-13 08:31:33,339 | INFO     | collected zombie processes
[2025-10-13 10:52:15] 2025-10-13 08:31:33,339 | INFO     | will attempt to kill all subprocesses of pid=3725906
[2025-10-13 10:52:15] 2025-10-13 08:31:33,415 | INFO     | PID=3718182 has CPU usage=16.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 10:52:15] 2025-10-13 08:31:33,416 | INFO     | .. there are 9 such processes running
[2025-10-13 10:52:15] 2025-10-13 08:31:34,126 | INFO     | process IDs to be killed: [3725906] (in reverse order)
[2025-10-13 10:52:15] 2025-10-13 08:31:34,361 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:52:15] 2025-10-13 08:31:34,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:52:15] 2025-10-13 08:31:34,391 | INFO     | did not find any defunct processes belonging to 3725906
[2025-10-13 10:52:15] 2025-10-13 08:31:34,420 | INFO     | did not find any defunct processes belonging to 3725906
[2025-10-13 10:52:15] 2025-10-13 08:31:34,421 | INFO     | ready for new job
[2025-10-13 10:52:15] 2025-10-13 08:31:34,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:52:15] 2025-10-13 08:31:34,423 | INFO     | ***************************************
[2025-10-13 10:52:15] 2025-10-13 08:31:34,423 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:52:15] 2025-10-13 08:31:34,423 | INFO     | ***************************************
[2025-10-13 10:52:15] 2025-10-13 08:31:34,423 | INFO     | 
[2025-10-13 10:52:15] 2025-10-13 08:31:34,431 | INFO     | architecture information:
[2025-10-13 10:52:15] 2025-10-13 08:31:34,432 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:52:15] 2025-10-13 08:31:34,457 | INFO     | cat /etc/os-release:
[2025-10-13 10:52:15] NAME="CentOS Linux"
[2025-10-13 10:52:15] VERSION="7 (Core)"
[2025-10-13 10:52:15] ID="centos"
[2025-10-13 10:52:15] ID_LIKE="rhel fedora"
[2025-10-13 10:52:15] VERSION_ID="7"
[2025-10-13 10:52:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:52:15] ANSI_COLOR="0;31"
[2025-10-13 10:52:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:52:15] HOME_URL="https://www.centos.org/"
[2025-10-13 10:52:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:52:15] 
[2025-10-13 10:52:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:52:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:52:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:52:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:52:15] 
[2025-10-13 10:52:15] 2025-10-13 08:31:34,457 | INFO     | ***************************************
[2025-10-13 10:52:15] 2025-10-13 08:31:34,958 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2025-10-13 10:52:15] 2025-10-13 08:31:34,987 | INFO     | sufficient remaining disk space (3339145183232 B)
[2025-10-13 10:52:15] 2025-10-13 08:31:34,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:52:15] 2025-10-13 08:31:34,987 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:52:15] 2025-10-13 08:31:34,988 | INFO     | update_server=False
[2025-10-13 10:52:15] 2025-10-13 08:31:34,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:52:15] 2025-10-13 08:31:34,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:52:15] 2025-10-13 08:31:34,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:52:15] 2025-10-13 08:31:35,042 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 10:52:15] 2025-10-13 08:31:35,042 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 10:52:15] 2025-10-13 08:31:35,042 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:52:15] 2025-10-13 08:31:35,043 | INFO     | will abort loop
[2025-10-13 10:52:15] 2025-10-13 08:31:35,142 | INFO     | all data control threads have been joined
[2025-10-13 10:52:15] 2025-10-13 08:31:35,646 | INFO     | all payload control threads have been joined
[2025-10-13 10:52:15] 2025-10-13 08:31:35,993 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,048 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,081 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,144 | INFO     | [data] control thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,224 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,251 | INFO     | [job] validate thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,503 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,548 | INFO     | all job control threads have been joined
[2025-10-13 10:52:15] 2025-10-13 08:31:36,655 | INFO     | [payload] control thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,893 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:36,994 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:37,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:52:15] 2025-10-13 08:31:37,354 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:37,488 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:37,553 | INFO     | [job] control thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:38,311 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:38,991 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:31:46,036 | INFO     | job.realtimelogging is not enabled
[2025-10-13 10:52:15] 2025-10-13 08:31:47,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:52:15] 2025-10-13 08:32:06,454 | INFO     | PID=3718182 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:52:15] 2025-10-13 08:32:06,454 | INFO     | .. there are 9 such processes running
[2025-10-13 10:52:15] 2025-10-13 08:32:06,454 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:52:15] 2025-10-13 08:32:06,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:52:15] 2025-10-13 08:32:06,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:52:15] 2025-10-13 08:32:31,458 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:52:15] 2025-10-13 08:32:31,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23417255483200)>', '<ExcThread(monitor, started 23417015203584)>']
[2025-10-13 10:52:15] 2025-10-13 08:32:32,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:52:15] 2025-10-13 08:32:32,581 | INFO     | [monitor] control thread has ended
[2025-10-13 10:52:15] 2025-10-13 08:32:36,681 | INFO     | all workflow threads have been joined
[2025-10-13 10:52:15] 2025-10-13 08:32:36,682 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:52:15] 2025-10-13 08:32:36,682 | INFO     | traces error code: 0
[2025-10-13 10:52:15] 2025-10-13 08:32:36,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:52:15] 2025-10-13 08:32:36,882 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:52:15] 2025-10-13 08:32:36,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:52:15] 2025-10-13 08:32:36,890 [wrapper] pilotpid: 3718182
[2025-10-13 10:52:15] 2025-10-13 08:32:36,894 [wrapper] Pilot exit status: 0
[2025-10-13 10:52:15] 2025-10-13 08:32:36,913 [wrapper] pandaids: 6839220956
[2025-10-13 10:52:15] 2025-10-13 08:32:37,078 [wrapper] cleanup supervisor_pilot 4085278 3718183
[2025-10-13 10:52:15] 2025-10-13 08:32:37,082 [wrapper] Test setup, not cleaning
[2025-10-13 10:52:15] 2025-10-13 08:32:37,086 [wrapper] apfmon messages muted
[2025-10-13 10:52:15] 2025-10-13 08:32:37,090 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:52:15] 2025-10-13 08:32:37,094 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:52:15]  *** Error codes and diagnostics ***
[2025-10-13 10:52:15]     "exeErrorCode": 0,
[2025-10-13 10:52:15]     "exeErrorDiag": "",
[2025-10-13 10:52:15]     "pilotErrorCode": 0,
[2025-10-13 10:52:15]     "pilotErrorDiag": "",
[2025-10-13 10:52:15]  *** Listing of results directory ***
[2025-10-13 10:52:15] total 411276
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:02 pilot3.tar.gz
[2025-10-13 10:52:15] -rwx------ 1 boinc boinc     36292 Oct 12 03:22 runpilot2-wrapper.sh
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:22 queuedata.json
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:52:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:57 run_atlas
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:57 job.xml
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc      6688 Oct 13 07:58 init_data.xml
[2025-10-13 10:52:15] -rw-r--r-- 2 boinc boinc 222834975 Oct 13 07:58 EVNT.46676267._001171.pool.root.1
[2025-10-13 10:52:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:58 start_atlas.sh
[2025-10-13 10:52:15] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:58 shared
[2025-10-13 10:52:15] -rw-r--r-- 2 boinc boinc    569687 Oct 13 07:58 input.tar.gz
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:58 boinc_lockfile
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc      2550 Oct 13 07:58 pandaJob.out
[2025-10-13 10:52:15] -rw------- 1 boinc boinc    973230 Oct 13 07:58 agis_schedconf.cvmfs.json
[2025-10-13 10:52:15] -rw------- 1 boinc boinc   1560580 Oct 13 07:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:52:15] drwx------ 5 boinc boinc      4096 Oct 13 07:58 pilot3
[2025-10-13 10:52:15] -rw------- 1 boinc boinc 191130689 Oct 13 10:30 HITS.46676269._068282.pool.root.1
[2025-10-13 10:52:15] -rw------- 1 boinc boinc      1026 Oct 13 10:31 memory_monitor_summary.json
[2025-10-13 10:52:15] -rw------- 1 boinc boinc    340376 Oct 13 10:31 log.46676269._068282.job.log.tgz.1
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc       528 Oct 13 10:31 boinc_task_state.xml
[2025-10-13 10:52:15] -rw------- 1 boinc boinc      7784 Oct 13 10:31 heartbeat.json
[2025-10-13 10:52:15] -rw------- 1 boinc boinc        95 Oct 13 10:31 pilot_heartbeat.json
[2025-10-13 10:52:15] -rw------- 1 boinc boinc      5093 Oct 13 10:32 pilotlog.txt
[2025-10-13 10:52:15] -rw------- 1 boinc boinc   1296525 Oct 13 10:32 log.46676269._068282.job.log.1
[2025-10-13 10:52:15] -rw------- 1 boinc boinc       357 Oct 13 10:32 output.list
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:32 runtime_log
[2025-10-13 10:52:15] -rw------- 1 boinc boinc   1658880 Oct 13 10:32 result.tar.gz
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc      9084 Oct 13 10:32 runtime_log.err
[2025-10-13 10:52:15] -rw------- 1 boinc boinc       662 Oct 13 10:32 2UWLDm1xzR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm9uSMDm4rstOo.diag
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc        26 Oct 13 10:52 wrapper_checkpoint.txt
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:52 boinc_mmap_file
[2025-10-13 10:52:15] -rw-r--r-- 1 boinc boinc     20946 Oct 13 10:52 stderr.txt
[2025-10-13 10:52:15] HITS file was successfully produced:
[2025-10-13 10:52:15] -rw------- 1 boinc boinc 191130689 Oct 13 10:30 shared/HITS.pool.root.1
[2025-10-13 10:52:15]  *** Contents of shared directory: ***
[2025-10-13 10:52:15] total 406472
[2025-10-13 10:52:15] -rw-r--r-- 2 boinc boinc 222834975 Oct 13 07:58 ATLAS.root_0
[2025-10-13 10:52:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:58 start_atlas.sh
[2025-10-13 10:52:15] -rw-r--r-- 2 boinc boinc    569687 Oct 13 07:58 input.tar.gz
[2025-10-13 10:52:15] -rw------- 1 boinc boinc 191130689 Oct 13 10:30 HITS.pool.root.1
[2025-10-13 10:52:15] -rw------- 1 boinc boinc   1658880 Oct 13 10:32 result.tar.gz
10:52:16 (3713929): run_atlas exited; CPU time 35696.295167
10:52:16 (3713929): called boinc_finish(0)

</stderr_txt>
]]>

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