Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:05 (3389868): wrapper (7.7.26015): starting
16:32:05 (3389868): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 16:32:05] Arguments: --nthreads 6
[2025-10-12 16:32:05] Threads: 6
[2025-10-12 16:32:05] Checking for CVMFS
[2025-10-12 16:32:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:32:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:32:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:32:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:32:06] 2.11.5.0 3651556 4003 72356 151612 2 188 38656551 52428800 1858 130560 0 12421071 99.998 135292 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 16:32:06] CVMFS is ok
[2025-10-12 16:32:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:32:06] Checking for apptainer binary...
[2025-10-12 16:32:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:32:06] Running /usr/bin/apptainer --version
[2025-10-12 16:32:06] apptainer version 1.3.5-1.el9
[2025-10-12 16:32:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:32:06] testio008
[2025-10-12 16:32:06] apptainer works
[2025-10-12 16:32:06] Set ATHENA_PROC_NUMBER=6
[2025-10-12 16:32:06] Set ATHENA_CORE_NUMBER=6
[2025-10-12 16:32:06] Starting ATLAS job with PandaID=6839387091
[2025-10-12 16:32:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:41:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:41:31] 2025-10-12 08:40:34,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:35,156 | INFO     | PID=3393649 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:41:31] 2025-10-12 08:40:35,156 | INFO     | .. there are 3 such processes running
[2025-10-12 17:41:31] 2025-10-12 08:40:36,156 | INFO     | time since job start (4102s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:37,025 | INFO     | monitor loop #324: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:37,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:38,161 | INFO     | time since job start (4104s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:39,528 | INFO     | monitor loop #325: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:39,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:40,166 | INFO     | time since job start (4106s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:42,032 | INFO     | monitor loop #326: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:42,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:42,172 | INFO     | time since job start (4108s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:44,177 | INFO     | time since job start (4110s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:44,538 | INFO     | monitor loop #327: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:44,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:46,182 | INFO     | time since job start (4112s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:46,182 | INFO     | 4116s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 17:41:31] 2025-10-12 08:40:47,040 | INFO     | monitor loop #328: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:47,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:48,187 | INFO     | time since job start (4114s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:49,542 | INFO     | monitor loop #329: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:49,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:50,192 | INFO     | time since job start (4116s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:52,045 | INFO     | monitor loop #330: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:52,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:52,197 | INFO     | time since job start (4118s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:54,202 | INFO     | time since job start (4120s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:54,548 | INFO     | monitor loop #331: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:54,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:56,207 | INFO     | time since job start (4122s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:57,050 | INFO     | monitor loop #332: job 0:6839387091 is in state 'finished'
[2025-10-12 17:41:31] 2025-10-12 08:40:57,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:41:31] 2025-10-12 08:40:57,257 | INFO     | PID=3393649 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:41:31] 2025-10-12 08:40:57,257 | INFO     | .. there are 3 such processes running
[2025-10-12 17:41:31] 2025-10-12 08:40:58,258 | INFO     | time since job start (4124s) is within the limit (172800.0s)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,468 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:41:31] 2025-10-12 08:40:58,470 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4155.07215
[2025-10-12 17:41:31] 2025-10-12 08:40:58,471 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6839387091/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,472 | INFO     | extracted standard info from prmon json
[2025-10-12 17:41:31] 2025-10-12 08:40:58,472 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:41:31] 2025-10-12 08:40:58,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:41:31] 2025-10-12 08:40:58,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:41:31] 2025-10-12 08:40:58,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | sum of deviations: -3032151644.0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | mean x: 1760256426.0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | mean y: 2548394.2881355933
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | -- intersect: 83835966978.73985
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | intersect: 83835966978.73985
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | chi2: 0.07255994473577364
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | -- intersect: 83835966978.73985
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | current memory leak: -47.63 B/s (using 59 data points, chi2=0.07)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | could have reported an average CPU frequency of 3712 MHz (6 samples)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,473 | INFO     | ..............................
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . Timing measurements:
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . get job = 0 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . initial setup = 4 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . payload setup = 2 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . stage-in = 0 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . payload execution = 4026 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . stage-out = 0 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | . log creation = 0 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,474 | INFO     | ..............................
[2025-10-12 17:41:31] 2025-10-12 08:40:58,781 | INFO     | 
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | job summary report
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | --------------------------------------------------
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | PanDA job id: 6839387091
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | task id: 46676269
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | errors: (none)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | pilot state: finished 
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | transexitcode: 0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | exeerrorcode: 0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | exeerrordiag: 
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | exitcode: 0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | exitmsg: OK
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | cpuconsumptiontime: 21246 s
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | nevents: 400
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | neventsw: 0
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | pid: 3400353
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | pgrp: 3400353
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | corecount: 6
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | event service: False
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | sizes: {0: 2348858, 2: 2349120, 11: 2349148, 4032: 2375048, 4033: 2384046, 4036: 2384102, 4111: 2384424}
[2025-10-12 17:41:31] 2025-10-12 08:40:58,782 | INFO     | --------------------------------------------------
[2025-10-12 17:41:31] 2025-10-12 08:40:58,783 | INFO     | 
[2025-10-12 17:41:31] 2025-10-12 08:40:58,783 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | job 6839387091 has completed (purged errors)
[2025-10-12 17:41:31] 2025-10-12 08:40:58,791 | INFO     | overall cleanup function is called
[2025-10-12 17:41:31] 2025-10-12 08:40:59,796 | INFO     | --- collectZombieJob: --- 10, [3400353]
[2025-10-12 17:41:31] 2025-10-12 08:40:59,796 | INFO     | zombie collector waiting for pid 3400353
[2025-10-12 17:41:31] 2025-10-12 08:40:59,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:41:31] 2025-10-12 08:40:59,797 | INFO     | collected zombie processes
[2025-10-12 17:41:31] 2025-10-12 08:40:59,797 | INFO     | will attempt to kill all subprocesses of pid=3400353
[2025-10-12 17:41:31] 2025-10-12 08:40:59,833 | INFO     | process IDs to be killed: [3400353] (in reverse order)
[2025-10-12 17:41:31] 2025-10-12 08:40:59,852 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:41:31] 2025-10-12 08:40:59,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:41:31] 2025-10-12 08:40:59,855 | INFO     | did not find any defunct processes belonging to 3400353
[2025-10-12 17:41:31] 2025-10-12 08:40:59,862 | INFO     | did not find any defunct processes belonging to 3400353
[2025-10-12 17:41:31] 2025-10-12 08:40:59,862 | INFO     | ready for new job
[2025-10-12 17:41:31] 2025-10-12 08:40:59,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:41:31] 2025-10-12 08:40:59,863 | INFO     | ***************************************
[2025-10-12 17:41:31] 2025-10-12 08:40:59,863 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:41:31] 2025-10-12 08:40:59,863 | INFO     | ***************************************
[2025-10-12 17:41:31] 2025-10-12 08:40:59,863 | INFO     | 
[2025-10-12 17:41:31] 2025-10-12 08:40:59,863 | INFO     | architecture information:
[2025-10-12 17:41:31] 2025-10-12 08:40:59,864 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:41:31] 2025-10-12 08:40:59,870 | INFO     | cat /etc/os-release:
[2025-10-12 17:41:31] NAME="CentOS Linux"
[2025-10-12 17:41:31] VERSION="7 (Core)"
[2025-10-12 17:41:31] ID="centos"
[2025-10-12 17:41:31] ID_LIKE="rhel fedora"
[2025-10-12 17:41:31] VERSION_ID="7"
[2025-10-12 17:41:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:41:31] ANSI_COLOR="0;31"
[2025-10-12 17:41:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:41:31] HOME_URL="https://www.centos.org/"
[2025-10-12 17:41:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:41:31] 
[2025-10-12 17:41:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:41:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:41:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:41:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:41:31] 
[2025-10-12 17:41:31] 2025-10-12 08:40:59,870 | INFO     | ***************************************
[2025-10-12 17:41:31] 2025-10-12 08:41:00,372 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-12 17:41:31] 2025-10-12 08:41:00,379 | INFO     | sufficient remaining disk space (281318260736 B)
[2025-10-12 17:41:31] 2025-10-12 08:41:00,379 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:41:31] 2025-10-12 08:41:00,379 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:41:31] 2025-10-12 08:41:00,379 | INFO     | update_server=False
[2025-10-12 17:41:31] 2025-10-12 08:41:00,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:41:31] 2025-10-12 08:41:00,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:41:31] 2025-10-12 08:41:00,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:41:31] 2025-10-12 08:41:00,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:41:31] 2025-10-12 08:41:00,558 | INFO     | aborting loop
[2025-10-12 17:41:31] 2025-10-12 08:41:00,679 | INFO     | all data control threads have been joined
[2025-10-12 17:41:31] 2025-10-12 08:41:00,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:41:31] 2025-10-12 08:41:00,754 | INFO     | all payload control threads have been joined
[2025-10-12 17:41:31] 2025-10-12 08:41:00,978 | INFO     | all job control threads have been joined
[2025-10-12 17:41:31] 2025-10-12 08:41:01,381 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,384 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,533 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,554 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,562 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,681 | INFO     | [data] control thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,759 | INFO     | [payload] control thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,859 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:01,983 | INFO     | [job] control thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:02,351 | INFO     | [job] validate thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:02,353 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:02,471 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:02,475 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:02,515 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:04,754 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:41:31] 2025-10-12 08:41:20,587 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:41:31] 2025-10-12 08:41:22,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519106279232)>', '<ExcThread(monitor, started 140518612776704)>']
[2025-10-12 17:41:31] 2025-10-12 08:41:27,043 | INFO     | all workflow threads have been joined
[2025-10-12 17:41:31] 2025-10-12 08:41:27,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:41:31] 2025-10-12 08:41:27,044 | INFO     | traces error code: 0
[2025-10-12 17:41:31] 2025-10-12 08:41:27,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:41:31] 2025-10-12 08:41:31,355 | INFO     | PID=3393649 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:41:31] 2025-10-12 08:41:31,359 | INFO     | .. there are 3 such processes running
[2025-10-12 17:41:31] 2025-10-12 08:41:31,359 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:41:31] 2025-10-12 08:41:31,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:41:31] 2025-10-12 08:41:31,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:41:31] 2025-10-12 08:41:31,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:41:31] 2025-10-12 08:41:31,359 | INFO     | [monitor] control thread has ended
[2025-10-12 17:41:31] 2025-10-12 08:41:31,414 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:41:31] 2025-10-12 08:41:31,415 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:41:31] 2025-10-12 08:41:31,416 [wrapper] pilotpid: 3393649
[2025-10-12 17:41:31] 2025-10-12 08:41:31,417 [wrapper] Pilot exit status: 0
[2025-10-12 17:41:31] 2025-10-12 08:41:31,420 [wrapper] pandaids: 6839387091
[2025-10-12 17:41:31] 2025-10-12 08:41:31,432 [wrapper] cleanup supervisor_pilot 3458256 3393650
[2025-10-12 17:41:31] 2025-10-12 08:41:31,433 [wrapper] Test setup, not cleaning
[2025-10-12 17:41:31] 2025-10-12 08:41:31,434 [wrapper] apfmon messages muted
[2025-10-12 17:41:31] 2025-10-12 08:41:31,435 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:41:31] 2025-10-12 08:41:31,436 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:41:31]  *** Error codes and diagnostics ***
[2025-10-12 17:41:31]     "exeErrorCode": 0,
[2025-10-12 17:41:31]     "exeErrorDiag": "",
[2025-10-12 17:41:31]     "pilotErrorCode": 0,
[2025-10-12 17:41:31]     "pilotErrorDiag": "",
[2025-10-12 17:41:31]  *** Listing of results directory ***
[2025-10-12 17:41:31] total 414940
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc    557409 Oct 12 13:11 pilot3.tar.gz
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:14 queuedata.json
[2025-10-12 17:41:31] -rwx------. 1 boinc boinc     36292 Oct 12 13:15 runpilot2-wrapper.sh
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc       100 Oct 12 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:41:31] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 16:32 run_atlas
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc       105 Oct 12 16:32 job.xml
[2025-10-12 17:41:31] -rw-r--r--. 2 boinc boinc 222705972 Oct 12 16:32 EVNT.46676267._003283.pool.root.1
[2025-10-12 17:41:31] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:32 start_atlas.sh
[2025-10-12 17:41:31] drwxrwx--x. 2 boinc boinc        68 Oct 12 16:32 shared
[2025-10-12 17:41:31] -rw-r--r--. 2 boinc boinc    569683 Oct 12 16:32 input.tar.gz
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc      9509 Oct 12 16:32 init_data.xml
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc         0 Oct 12 16:32 boinc_lockfile
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc      2551 Oct 12 16:32 pandaJob.out
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc    975520 Oct 12 16:32 agis_schedconf.cvmfs.json
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc   1560580 Oct 12 16:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:41:31] drwx------. 5 boinc boinc      4096 Oct 12 16:32 pilot3
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc 196464220 Oct 12 17:39 HITS.46676269._071022.pool.root.1
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc       529 Oct 12 17:39 boinc_task_state.xml
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc      1021 Oct 12 17:39 memory_monitor_summary.json
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc    297163 Oct 12 17:39 log.46676269._071022.job.log.tgz.1
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc        95 Oct 12 17:40 pilot_heartbeat.json
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc      7769 Oct 12 17:40 heartbeat.json
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc        27 Oct 12 17:41 wrapper_checkpoint.txt
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc      8192 Oct 12 17:41 boinc_mmap_file
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc       822 Oct 12 17:41 pilotlog.txt
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc    620759 Oct 12 17:41 log.46676269._071022.job.log.1
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc       357 Oct 12 17:41 output.list
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc       620 Oct 12 17:41 runtime_log
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc    942080 Oct 12 17:41 result.tar.gz
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc       641 Oct 12 17:41 SW2KDmJf2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmODTMDmRKLSum.diag
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc      8661 Oct 12 17:41 runtime_log.err
[2025-10-12 17:41:31] -rw-r--r--. 1 boinc boinc     22055 Oct 12 17:41 stderr.txt
[2025-10-12 17:41:31] HITS file was successfully produced:
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc 196464220 Oct 12 17:39 shared/HITS.pool.root.1
[2025-10-12 17:41:31]  *** Contents of shared directory: ***
[2025-10-12 17:41:31] total 410844
[2025-10-12 17:41:31] -rw-r--r--. 2 boinc boinc 222705972 Oct 12 16:32 ATLAS.root_0
[2025-10-12 17:41:31] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:32 start_atlas.sh
[2025-10-12 17:41:31] -rw-r--r--. 2 boinc boinc    569683 Oct 12 16:32 input.tar.gz
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc 196464220 Oct 12 17:39 HITS.pool.root.1
[2025-10-12 17:41:31] -rw-------. 1 boinc boinc    942080 Oct 12 17:41 result.tar.gz
17:41:32 (3389868): run_atlas exited; CPU time 21267.109592
17:41:32 (3389868): called boinc_finish(0)

</stderr_txt>
]]>

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