Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:37:08 (23367): wrapper (7.7.26015): starting
02:37:08 (23367): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 02:37:08] Arguments: --nthreads 8
[2025-10-12 02:37:08] Threads: 8
[2025-10-12 02:37:08] Checking for CVMFS
[2025-10-12 02:37:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:37:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:37:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:37:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:37:09] 2.11.2.0 1598 215852 128052 151611 1 64 20180573 20275201 917 130560 1 220674480 99.992 11692329 11167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 02:37:09] CVMFS is ok
[2025-10-12 02:37:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:37:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:37:09] Further information can be found at the LHC@home message board.
[2025-10-12 02:37:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:37:09] Checking for apptainer binary...
[2025-10-12 02:37:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:37:09] Running /usr/bin/apptainer --version
[2025-10-12 02:37:09] apptainer version 1.3.2-1.el7
[2025-10-12 02:37:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:37:10] c-205-36.aglt2.org
[2025-10-12 02:37:10] apptainer works
[2025-10-12 02:37:10] Set ATHENA_PROC_NUMBER=8
[2025-10-12 02:37:10] Set ATHENA_CORE_NUMBER=8
[2025-10-12 02:37:10] Starting ATLAS job with PandaID=6839386682
[2025-10-12 02:37:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:45:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:45:53]  status_code=0
[2025-10-12 03:45:53]  storage_token=
[2025-10-12 03:45:53]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839386682/log.46676269._070978.job.log.tgz.1
[2025-10-12 03:45:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/75/log.46676269._070978.job.log.tgz.1
[2025-10-12 03:45:53]  workdir=None
[2025-10-12 03:45:53] ]
[2025-10-12 03:45:53] 2025-10-12 07:45:12,516 | INFO     | transferring file log.46676269._070978.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839386682/log.46676269._070978.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 03:45:53] 2025-10-12 07:45:12,517 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839386682/log.46676269._070978.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._070978.job
[2025-10-12 03:45:53] 2025-10-12 07:45:12,538 | INFO     | adding to output.list: log.46676269._070978.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/75/log.46676269._070978.job.log.tg
[2025-10-12 03:45:53] 2025-10-12 07:45:12,539 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 03:45:53] 2025-10-12 07:45:12,539 | INFO     | summary of transferred files:
[2025-10-12 03:45:53] 2025-10-12 07:45:12,539 | INFO     |  -- lfn=log.46676269._070978.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 03:45:53] 2025-10-12 07:45:12,539 | INFO     | stage-out finished correctly
[2025-10-12 03:45:53] 2025-10-12 07:45:14,249 | INFO     | time since job start (4072s) is within the limit (172800.0s)
[2025-10-12 03:45:53] 2025-10-12 07:45:14,761 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 03:45:53] 2025-10-12 07:45:14,848 | INFO     | job 6839386682 has state=finished
[2025-10-12 03:45:53] 2025-10-12 07:45:14,848 | INFO     | preparing for final server update for job 6839386682 in state='finished'
[2025-10-12 03:45:53] 2025-10-12 07:45:14,849 | INFO     | this job has now completed (state=finished)
[2025-10-12 03:45:53] 2025-10-12 07:45:14,849 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 03:45:53] 2025-10-12 07:45:14,849 | INFO     | log transfer has been attempted: DONE
[2025-10-12 03:45:53] 2025-10-12 07:45:14,849 | INFO     | job 6839386682 has finished - writing final server update
[2025-10-12 03:45:53] 2025-10-12 07:45:14,850 | INFO     | total number of processed events: 400 (read)
[2025-10-12 03:45:53] 2025-10-12 07:45:14,850 | INFO     | monitor loop #304: job 0:6839386682 is in state 'finished'
[2025-10-12 03:45:53] 2025-10-12 07:45:14,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:45:53] 2025-10-12 07:45:14,851 | INFO     | executing command: lscpu
[2025-10-12 03:45:53] 2025-10-12 07:45:14,882 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 03:45:53] 2025-10-12 07:45:16,255 | INFO     | time since job start (4074s) is within the limit (172800.0s)
[2025-10-12 03:45:53] 2025-10-12 07:45:17,353 | INFO     | monitor loop #305: job 0:6839386682 is in state 'finished'
[2025-10-12 03:45:53] 2025-10-12 07:45:17,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:45:53] 2025-10-12 07:45:18,260 | INFO     | time since job start (4076s) is within the limit (172800.0s)
[2025-10-12 03:45:53] 2025-10-12 07:45:19,410 | INFO     | PID=27059 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 03:45:53] 2025-10-12 07:45:19,411 | INFO     | .. there are 2 such processes running
[2025-10-12 03:45:53] 2025-10-12 07:45:19,856 | INFO     | monitor loop #306: job 0:6839386682 is in state 'finished'
[2025-10-12 03:45:53] 2025-10-12 07:45:19,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,411 | INFO     | time since job start (4078s) is within the limit (172800.0s)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,718 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 03:45:53] 2025-10-12 07:45:20,722 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2021.18175
[2025-10-12 03:45:53] 2025-10-12 07:45:20,725 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839386682/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,726 | INFO     | extracted standard info from prmon json
[2025-10-12 03:45:53] 2025-10-12 07:45:20,727 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:45:53] 2025-10-12 07:45:20,727 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:45:53] 2025-10-12 07:45:20,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:45:53] 2025-10-12 07:45:20,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:45:53] 2025-10-12 07:45:20,729 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:45:53] 2025-10-12 07:45:20,729 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 03:45:53] 2025-10-12 07:45:20,730 | INFO     | sum of deviations: -6451644107.5
[2025-10-12 03:45:53] 2025-10-12 07:45:20,730 | INFO     | mean x: 1760253171.5
[2025-10-12 03:45:53] 2025-10-12 07:45:20,730 | INFO     | mean y: 2651919.35
[2025-10-12 03:45:53] 2025-10-12 07:45:20,730 | INFO     | -- intersect: 169605842055.94193
[2025-10-12 03:45:53] 2025-10-12 07:45:20,730 | INFO     | intersect: 169605842055.94193
[2025-10-12 03:45:53] 2025-10-12 07:45:20,730 | INFO     | chi2: 0.04271709184312064
[2025-10-12 03:45:53] 2025-10-12 07:45:20,731 | INFO     | -- intersect: 169605842055.94193
[2025-10-12 03:45:53] 2025-10-12 07:45:20,731 | INFO     | current memory leak: -96.35 B/s (using 60 data points, chi2=0.04)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,731 | INFO     | could have reported an average CPU frequency of 2228 MHz (6 samples)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,731 | INFO     | ..............................
[2025-10-12 03:45:53] 2025-10-12 07:45:20,731 | INFO     | . Timing measurements:
[2025-10-12 03:45:53] 2025-10-12 07:45:20,731 | INFO     | . get job = 0 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | . initial setup = 2 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | . payload setup = 5 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | . stage-in = 0 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | . payload execution = 4043 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | . stage-out = 0 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | . log creation = 0 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,732 | INFO     | ..............................
[2025-10-12 03:45:53] 2025-10-12 07:45:20,811 | INFO     | 
[2025-10-12 03:45:53] 2025-10-12 07:45:20,811 | INFO     | job summary report
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | --------------------------------------------------
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | PanDA job id: 6839386682
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | task id: 46676269
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | errors: (none)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | pilot state: finished 
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | transexitcode: 0
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | exeerrorcode: 0
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | exeerrordiag: 
[2025-10-12 03:45:53] 2025-10-12 07:45:20,812 | INFO     | exitcode: 0
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | exitmsg: OK
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | cpuconsumptiontime: 29275 s
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | nevents: 400
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | neventsw: 0
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | pid: 1054
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | pgrp: 1054
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | corecount: 8
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | event service: False
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | sizes: {0: 2348628, 1: 2348883, 5: 2349145, 12: 2349201, 4052: 2375178, 4053: 2375177, 4054: 2384359, 4057: 2384415, 4063: 2384609}
[2025-10-12 03:45:53] 2025-10-12 07:45:20,813 | INFO     | --------------------------------------------------
[2025-10-12 03:45:53] 2025-10-12 07:45:20,814 | INFO     | 
[2025-10-12 03:45:53] 2025-10-12 07:45:20,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 03:45:53] 2025-10-12 07:45:20,835 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:45:53] 2025-10-12 07:45:20,838 | INFO     | job 6839386682 has completed (purged errors)
[2025-10-12 03:45:53] 2025-10-12 07:45:20,838 | INFO     | overall cleanup function is called
[2025-10-12 03:45:53] 2025-10-12 07:45:21,846 | INFO     | --- collectZombieJob: --- 10, [1054]
[2025-10-12 03:45:53] 2025-10-12 07:45:21,846 | INFO     | zombie collector waiting for pid 1054
[2025-10-12 03:45:53] 2025-10-12 07:45:21,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:45:53] 2025-10-12 07:45:21,847 | INFO     | collected zombie processes
[2025-10-12 03:45:53] 2025-10-12 07:45:21,847 | INFO     | will attempt to kill all subprocesses of pid=1054
[2025-10-12 03:45:53] 2025-10-12 07:45:21,966 | INFO     | process IDs to be killed: [1054] (in reverse order)
[2025-10-12 03:45:53] 2025-10-12 07:45:22,028 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:45:53] 2025-10-12 07:45:22,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:45:53] 2025-10-12 07:45:22,031 | INFO     | did not find any defunct processes belonging to 1054
[2025-10-12 03:45:53] 2025-10-12 07:45:22,034 | INFO     | did not find any defunct processes belonging to 1054
[2025-10-12 03:45:53] 2025-10-12 07:45:22,034 | INFO     | ready for new job
[2025-10-12 03:45:53] 2025-10-12 07:45:22,034 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:45:53] 2025-10-12 07:45:22,035 | INFO     | ***************************************
[2025-10-12 03:45:53] 2025-10-12 07:45:22,035 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:45:53] 2025-10-12 07:45:22,036 | INFO     | ***************************************
[2025-10-12 03:45:53] 2025-10-12 07:45:22,036 | INFO     | 
[2025-10-12 03:45:53] 2025-10-12 07:45:22,037 | INFO     | architecture information:
[2025-10-12 03:45:53] 2025-10-12 07:45:22,037 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:45:53] 2025-10-12 07:45:22,051 | INFO     | cat /etc/os-release:
[2025-10-12 03:45:53] NAME="CentOS Linux"
[2025-10-12 03:45:53] VERSION="7 (Core)"
[2025-10-12 03:45:53] ID="centos"
[2025-10-12 03:45:53] ID_LIKE="rhel fedora"
[2025-10-12 03:45:53] VERSION_ID="7"
[2025-10-12 03:45:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:45:53] ANSI_COLOR="0;31"
[2025-10-12 03:45:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:45:53] HOME_URL="https://www.centos.org/"
[2025-10-12 03:45:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:45:53] 
[2025-10-12 03:45:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:45:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:45:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:45:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:45:53] 
[2025-10-12 03:45:53] 2025-10-12 07:45:22,052 | INFO     | ***************************************
[2025-10-12 03:45:53] 2025-10-12 07:45:22,554 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 03:45:53] 2025-10-12 07:45:22,573 | INFO     | sufficient remaining disk space (32764854272 B)
[2025-10-12 03:45:53] 2025-10-12 07:45:22,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:45:53] 2025-10-12 07:45:22,573 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:45:53] 2025-10-12 07:45:22,574 | INFO     | update_server=False
[2025-10-12 03:45:53] 2025-10-12 07:45:22,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:45:53] 2025-10-12 07:45:22,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:45:53] 2025-10-12 07:45:22,606 | INFO     | all job control threads have been joined
[2025-10-12 03:45:53] 2025-10-12 07:45:22,867 | INFO     | all payload control threads have been joined
[2025-10-12 03:45:53] 2025-10-12 07:45:23,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:45:53] 2025-10-12 07:45:23,293 | INFO     | all data control threads have been joined
[2025-10-12 03:45:53] 2025-10-12 07:45:23,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:45:53] 2025-10-12 07:45:23,365 | INFO     | aborting loop
[2025-10-12 03:45:53] 2025-10-12 07:45:23,579 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:23,580 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:23,612 | INFO     | [job] control thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:23,873 | INFO     | [payload] control thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:23,956 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:24,299 | INFO     | [data] control thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:24,371 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:24,472 | INFO     | [job] validate thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:24,553 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:24,897 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:24,968 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:25,003 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:25,010 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:25,109 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:25,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:45:53] 2025-10-12 07:45:28,491 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:45:53] 2025-10-12 07:45:29,362 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:33,600 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:45:53] 2025-10-12 07:45:34,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:45:53] 2025-10-12 07:45:36,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432630556480)>', '<ExcThread(monitor, started 140432075912960)>']
[2025-10-12 03:45:53] 2025-10-12 07:45:41,129 | INFO     | all workflow threads have been joined
[2025-10-12 03:45:53] 2025-10-12 07:45:41,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:45:53] 2025-10-12 07:45:41,130 | INFO     | traces error code: 0
[2025-10-12 03:45:53] 2025-10-12 07:45:41,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:45:53] 2025-10-12 07:45:53,643 | INFO     | PID=27059 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 03:45:53] 2025-10-12 07:45:53,644 | INFO     | .. there are 2 such processes running
[2025-10-12 03:45:53] 2025-10-12 07:45:53,644 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:45:53] 2025-10-12 07:45:53,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:45:53] 2025-10-12 07:45:53,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:45:53] 2025-10-12 07:45:53,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:45:53] 2025-10-12 07:45:53,644 | INFO     | [monitor] control thread has ended
[2025-10-12 03:45:53] 2025-10-12 07:45:53,745 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:45:53] 2025-10-12 07:45:53,748 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:45:53] 2025-10-12 07:45:53,751 [wrapper] pilotpid: 27059
[2025-10-12 03:45:53] 2025-10-12 07:45:53,755 [wrapper] Pilot exit status: 0
[2025-10-12 03:45:53] 2025-10-12 07:45:53,767 [wrapper] pandaids: 6839386682
[2025-10-12 03:45:53] 2025-10-12 07:45:53,809 [wrapper] cleanup supervisor_pilot 13733 27060
[2025-10-12 03:45:53] 2025-10-12 07:45:53,812 [wrapper] Test setup, not cleaning
[2025-10-12 03:45:53] 2025-10-12 07:45:53,816 [wrapper] apfmon messages muted
[2025-10-12 03:45:53] 2025-10-12 07:45:53,819 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:45:53] 2025-10-12 07:45:53,823 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:45:53]  *** Error codes and diagnostics ***
[2025-10-12 03:45:53]     "exeErrorCode": 0,
[2025-10-12 03:45:53]     "exeErrorDiag": "",
[2025-10-12 03:45:53]     "pilotErrorCode": 0,
[2025-10-12 03:45:53]     "pilotErrorDiag": "",
[2025-10-12 03:45:53]  *** Listing of results directory ***
[2025-10-12 03:45:53] total 406060
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:11 pilot3.tar.gz
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:14 queuedata.json
[2025-10-12 03:45:53] -rwx------ 1 boincer umatlas     36292 Oct 12 00:15 runpilot2-wrapper.sh
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas       100 Oct 12 02:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:45:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 02:37 run_atlas
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas       105 Oct 12 02:37 job.xml
[2025-10-12 03:45:53] -rw-r--r-- 2 boincer umatlas 221371633 Oct 12 02:37 EVNT.46676267._003282.pool.root.1
[2025-10-12 03:45:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 02:37 start_atlas.sh
[2025-10-12 03:45:53] drwxrwx--x 2 boincer umatlas      4096 Oct 12 02:37 shared
[2025-10-12 03:45:53] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 02:37 input.tar.gz
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas         0 Oct 12 02:37 boinc_lockfile
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 02:37 pandaJob.out
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas    975528 Oct 12 02:37 agis_schedconf.cvmfs.json
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas   1560580 Oct 12 02:37 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:45:53] drwx------ 5 boincer umatlas      4096 Oct 12 02:37 pilot3
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 03:38 init_data.xml
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas 188709285 Oct 12 03:44 HITS.46676269._070978.pool.root.1
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas       529 Oct 12 03:44 boinc_task_state.xml
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas      1046 Oct 12 03:45 memory_monitor_summary.json
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas        95 Oct 12 03:45 pilot_heartbeat.json
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas    305989 Oct 12 03:45 log.46676269._070978.job.log.tgz.1
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas      7839 Oct 12 03:45 heartbeat.json
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 03:45 boinc_mmap_file
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas        27 Oct 12 03:45 wrapper_checkpoint.txt
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas       820 Oct 12 03:45 pilotlog.txt
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas    610163 Oct 12 03:45 log.46676269._070978.job.log.1
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas       357 Oct 12 03:45 output.list
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas       620 Oct 12 03:45 runtime_log
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas    931840 Oct 12 03:45 result.tar.gz
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 03:45 runtime_log.err
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas       657 Oct 12 03:45 I4MKDmJf2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmyCTMDmLR9bRo.diag
[2025-10-12 03:45:53] -rw-r--r-- 1 boincer umatlas     22120 Oct 12 03:45 stderr.txt
[2025-10-12 03:45:53] HITS file was successfully produced:
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas 188709285 Oct 12 03:44 shared/HITS.pool.root.1
[2025-10-12 03:45:53]  *** Contents of shared directory: ***
[2025-10-12 03:45:53] total 401964
[2025-10-12 03:45:53] -rw-r--r-- 2 boincer umatlas 221371633 Oct 12 02:37 ATLAS.root_0
[2025-10-12 03:45:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 02:37 start_atlas.sh
[2025-10-12 03:45:53] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 02:37 input.tar.gz
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas 188709285 Oct 12 03:44 HITS.pool.root.1
[2025-10-12 03:45:53] -rw------- 1 boincer umatlas    931840 Oct 12 03:45 result.tar.gz
03:45:55 (23367): run_atlas exited; CPU time 29276.368593
03:45:55 (23367): called boinc_finish(0)

</stderr_txt>
]]>

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