Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:39:21 (11114): wrapper (7.7.26015): starting
02:39:21 (11114): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 02:39:21] Arguments: --nthreads 12
[2025-10-12 02:39:21] Threads: 12
[2025-10-12 02:39:21] Checking for CVMFS
[2025-10-12 02:39:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:39:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:39:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:39:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:39:22] 2.11.2.0 2913 222533 101040 151611 1 59 14722907 20275200 1 130560 1 108559076 99.984 13318741 12531 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 02:39:22] CVMFS is ok
[2025-10-12 02:39:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:39:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:39:22] Further information can be found at the LHC@home message board.
[2025-10-12 02:39:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:39:22] Checking for apptainer binary...
[2025-10-12 02:39:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:39:22] Running /usr/bin/apptainer --version
[2025-10-12 02:39:22] apptainer version 1.3.2-1.el7
[2025-10-12 02:39:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:39:23] c-205-6.aglt2.org
[2025-10-12 02:39:23] apptainer works
[2025-10-12 02:39:23] Set ATHENA_PROC_NUMBER=12
[2025-10-12 02:39:23] Set ATHENA_CORE_NUMBER=12
[2025-10-12 02:39:23] Starting ATLAS job with PandaID=6839387127
[2025-10-12 02:39:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:58:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:58:11]  replicas=None
[2025-10-12 03:58:11]  scope=mc23_13p6TeV
[2025-10-12 03:58:11]  status=None
[2025-10-12 03:58:11]  status_code=0
[2025-10-12 03:58:11]  storage_token=
[2025-10-12 03:58:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839387127/log.46676269._071058.job.log.tgz.1
[2025-10-12 03:58:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/89/log.46676269._071058.job.log.tgz.1
[2025-10-12 03:58:11]  workdir=None
[2025-10-12 03:58:11] ]
[2025-10-12 03:58:11] 2025-10-12 07:57:30,764 | INFO     | transferring file log.46676269._071058.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839387127/log.46676269._071058.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 03:58:11] 2025-10-12 07:57:30,765 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839387127/log.46676269._071058.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._071058.job
[2025-10-12 03:58:11] 2025-10-12 07:57:30,788 | INFO     | adding to output.list: log.46676269._071058.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/89/log.46676269._071058.job.log.tg
[2025-10-12 03:58:11] 2025-10-12 07:57:30,789 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 03:58:11] 2025-10-12 07:57:30,789 | INFO     | summary of transferred files:
[2025-10-12 03:58:11] 2025-10-12 07:57:30,789 | INFO     |  -- lfn=log.46676269._071058.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 03:58:11] 2025-10-12 07:57:30,790 | INFO     | stage-out finished correctly
[2025-10-12 03:58:11] 2025-10-12 07:57:31,612 | INFO     | time since job start (4672s) is within the limit (172800.0s)
[2025-10-12 03:58:11] 2025-10-12 07:57:32,749 | INFO     | monitor loop #347: job 0:6839387127 is in state 'finished'
[2025-10-12 03:58:11] 2025-10-12 07:57:32,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:58:11] 2025-10-12 07:57:33,261 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 03:58:11] 2025-10-12 07:57:33,618 | INFO     | time since job start (4674s) is within the limit (172800.0s)
[2025-10-12 03:58:11] 2025-10-12 07:57:34,239 | INFO     | job 6839387127 has state=finished
[2025-10-12 03:58:11] 2025-10-12 07:57:34,239 | INFO     | preparing for final server update for job 6839387127 in state='finished'
[2025-10-12 03:58:11] 2025-10-12 07:57:34,240 | INFO     | this job has now completed (state=finished)
[2025-10-12 03:58:11] 2025-10-12 07:57:34,240 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 03:58:11] 2025-10-12 07:57:34,240 | INFO     | log transfer has been attempted: DONE
[2025-10-12 03:58:11] 2025-10-12 07:57:34,241 | INFO     | job 6839387127 has finished - writing final server update
[2025-10-12 03:58:11] 2025-10-12 07:57:34,241 | INFO     | total number of processed events: 400 (read)
[2025-10-12 03:58:11] 2025-10-12 07:57:34,242 | INFO     | executing command: lscpu
[2025-10-12 03:58:11] 2025-10-12 07:57:34,266 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 03:58:11] 2025-10-12 07:57:35,252 | INFO     | monitor loop #348: job 0:6839387127 is in state 'finished'
[2025-10-12 03:58:11] 2025-10-12 07:57:35,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:58:11] 2025-10-12 07:57:35,623 | INFO     | time since job start (4676s) is within the limit (172800.0s)
[2025-10-12 03:58:11] 2025-10-12 07:57:37,628 | INFO     | time since job start (4678s) is within the limit (172800.0s)
[2025-10-12 03:58:11] 2025-10-12 07:57:37,756 | INFO     | monitor loop #349: job 0:6839387127 is in state 'finished'
[2025-10-12 03:58:11] 2025-10-12 07:57:37,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:58:11] 2025-10-12 07:57:38,955 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 03:58:11] 2025-10-12 07:57:38,959 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 03:58:11] 2025-10-12 07:57:38,961 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839387127/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:58:11] 2025-10-12 07:57:38,961 | INFO     | extracted standard info from prmon json
[2025-10-12 03:58:11] 2025-10-12 07:57:38,961 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:58:11] 2025-10-12 07:57:38,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:58:11] 2025-10-12 07:57:38,962 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:58:11] 2025-10-12 07:57:38,962 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:58:11] 2025-10-12 07:57:38,963 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:58:11] 2025-10-12 07:57:38,964 | INFO     | sum of square deviations: 106336877.5
[2025-10-12 03:58:11] 2025-10-12 07:57:38,964 | INFO     | sum of deviations: -8668689382.000002
[2025-10-12 03:58:11] 2025-10-12 07:57:38,964 | INFO     | mean x: 1760253616.5
[2025-10-12 03:58:11] 2025-10-12 07:57:38,964 | INFO     | mean y: 2794635.4571428574
[2025-10-12 03:58:11] 2025-10-12 07:57:38,964 | INFO     | -- intersect: 143500442805.35617
[2025-10-12 03:58:11] 2025-10-12 07:57:38,964 | INFO     | intersect: 143500442805.35617
[2025-10-12 03:58:11] 2025-10-12 07:57:38,965 | INFO     | chi2: 0.09048197422270707
[2025-10-12 03:58:11] 2025-10-12 07:57:38,965 | INFO     | -- intersect: 143500442805.35617
[2025-10-12 03:58:11] 2025-10-12 07:57:38,965 | INFO     | current memory leak: -81.52 B/s (using 70 data points, chi2=0.09)
[2025-10-12 03:58:11] 2025-10-12 07:57:38,965 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-10-12 03:58:11] 2025-10-12 07:57:38,965 | INFO     | ..............................
[2025-10-12 03:58:11] 2025-10-12 07:57:38,965 | INFO     | . Timing measurements:
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . get job = 0 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . initial setup = 2 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . payload setup = 6 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . stage-in = 0 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . payload execution = 4643 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . stage-out = 1 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | . log creation = 0 s
[2025-10-12 03:58:11] 2025-10-12 07:57:38,966 | INFO     | ..............................
[2025-10-12 03:58:11] 2025-10-12 07:57:39,049 | INFO     | 
[2025-10-12 03:58:11] 2025-10-12 07:57:39,050 | INFO     | job summary report
[2025-10-12 03:58:11] 2025-10-12 07:57:39,050 | INFO     | --------------------------------------------------
[2025-10-12 03:58:11] 2025-10-12 07:57:39,050 | INFO     | PanDA job id: 6839387127
[2025-10-12 03:58:11] 2025-10-12 07:57:39,050 | INFO     | task id: 46676269
[2025-10-12 03:58:11] 2025-10-12 07:57:39,050 | INFO     | errors: (none)
[2025-10-12 03:58:11] 2025-10-12 07:57:39,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:58:11] 2025-10-12 07:57:39,051 | INFO     | pilot state: finished 
[2025-10-12 03:58:11] 2025-10-12 07:57:39,051 | INFO     | transexitcode: 0
[2025-10-12 03:58:11] 2025-10-12 07:57:39,051 | INFO     | exeerrorcode: 0
[2025-10-12 03:58:11] 2025-10-12 07:57:39,051 | INFO     | exeerrordiag: 
[2025-10-12 03:58:11] 2025-10-12 07:57:39,051 | INFO     | exitcode: 0
[2025-10-12 03:58:11] 2025-10-12 07:57:39,051 | INFO     | exitmsg: OK
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | cpuconsumptiontime: 48715 s
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | nevents: 400
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | neventsw: 0
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | pid: 22081
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | pgrp: 22081
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | corecount: 12
[2025-10-12 03:58:11] 2025-10-12 07:57:39,052 | INFO     | event service: False
[2025-10-12 03:58:11] 2025-10-12 07:57:39,053 | INFO     | sizes: {0: 2348030, 1: 2348886, 6: 2349148, 12: 2349176, 4653: 2375341, 4654: 2375340, 4656: 2384550, 4658: 2384606, 4664: 2384800}
[2025-10-12 03:58:11] 2025-10-12 07:57:39,053 | INFO     | --------------------------------------------------
[2025-10-12 03:58:11] 2025-10-12 07:57:39,053 | INFO     | 
[2025-10-12 03:58:11] 2025-10-12 07:57:39,053 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 03:58:11] 2025-10-12 07:57:39,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,079 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:58:11] 2025-10-12 07:57:39,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:58:11] 2025-10-12 07:57:39,082 | INFO     | job 6839387127 has completed (purged errors)
[2025-10-12 03:58:11] 2025-10-12 07:57:39,082 | INFO     | overall cleanup function is called
[2025-10-12 03:58:11] 2025-10-12 07:57:40,090 | INFO     | --- collectZombieJob: --- 10, [22081]
[2025-10-12 03:58:11] 2025-10-12 07:57:40,090 | INFO     | zombie collector waiting for pid 22081
[2025-10-12 03:58:11] 2025-10-12 07:57:40,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:58:11] 2025-10-12 07:57:40,091 | INFO     | collected zombie processes
[2025-10-12 03:58:11] 2025-10-12 07:57:40,091 | INFO     | will attempt to kill all subprocesses of pid=22081
[2025-10-12 03:58:11] 2025-10-12 07:57:40,181 | INFO     | process IDs to be killed: [22081] (in reverse order)
[2025-10-12 03:58:11] 2025-10-12 07:57:40,231 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:58:11] 2025-10-12 07:57:40,231 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:58:11] 2025-10-12 07:57:40,235 | INFO     | did not find any defunct processes belonging to 22081
[2025-10-12 03:58:11] 2025-10-12 07:57:40,238 | INFO     | did not find any defunct processes belonging to 22081
[2025-10-12 03:58:11] 2025-10-12 07:57:40,239 | INFO     | ready for new job
[2025-10-12 03:58:11] 2025-10-12 07:57:40,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:58:11] 2025-10-12 07:57:40,240 | INFO     | ***************************************
[2025-10-12 03:58:11] 2025-10-12 07:57:40,240 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 03:58:11] 2025-10-12 07:57:40,240 | INFO     | ***************************************
[2025-10-12 03:58:11] 2025-10-12 07:57:40,240 | INFO     | 
[2025-10-12 03:58:11] 2025-10-12 07:57:40,241 | INFO     | architecture information:
[2025-10-12 03:58:11] 2025-10-12 07:57:40,241 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:58:11] 2025-10-12 07:57:40,256 | INFO     | cat /etc/os-release:
[2025-10-12 03:58:11] NAME="CentOS Linux"
[2025-10-12 03:58:11] VERSION="7 (Core)"
[2025-10-12 03:58:11] ID="centos"
[2025-10-12 03:58:11] ID_LIKE="rhel fedora"
[2025-10-12 03:58:11] VERSION_ID="7"
[2025-10-12 03:58:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:58:11] ANSI_COLOR="0;31"
[2025-10-12 03:58:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:58:11] HOME_URL="https://www.centos.org/"
[2025-10-12 03:58:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:58:11] 
[2025-10-12 03:58:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:58:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:58:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:58:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:58:11] 
[2025-10-12 03:58:11] 2025-10-12 07:57:40,256 | INFO     | ***************************************
[2025-10-12 03:58:11] 2025-10-12 07:57:40,759 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 03:58:11] 2025-10-12 07:57:40,775 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-10-12 03:58:11] 2025-10-12 07:57:40,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:58:11] 2025-10-12 07:57:40,776 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:58:11] 2025-10-12 07:57:40,776 | INFO     | update_server=False
[2025-10-12 03:58:11] 2025-10-12 07:57:40,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:58:11] 2025-10-12 07:57:40,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:58:11] 2025-10-12 07:57:40,956 | INFO     | all payload control threads have been joined
[2025-10-12 03:58:11] 2025-10-12 07:57:40,981 | INFO     | all data control threads have been joined
[2025-10-12 03:58:11] 2025-10-12 07:57:41,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:58:11] 2025-10-12 07:57:41,264 | INFO     | aborting loop
[2025-10-12 03:58:11] 2025-10-12 07:57:41,389 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:58:11] 2025-10-12 07:57:41,779 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:41,781 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:41,930 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:41,962 | INFO     | [payload] control thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:41,984 | INFO     | [data] control thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:42,223 | INFO     | all job control threads have been joined
[2025-10-12 03:58:11] 2025-10-12 07:57:42,270 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:42,290 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:42,517 | INFO     | [job] validate thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:42,931 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:43,047 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:43,134 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:43,228 | INFO     | [job] control thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:43,248 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:43,394 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:43,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:58:11] 2025-10-12 07:57:46,018 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:58:11] 2025-10-12 07:57:47,857 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:51,141 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:58:11] 2025-10-12 07:57:52,146 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:58:11] 2025-10-12 07:57:52,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323145516864)>', '<ExcThread(monitor, started 140322319349504)>']
[2025-10-12 03:58:11] 2025-10-12 07:57:57,693 | INFO     | all workflow threads have been joined
[2025-10-12 03:58:11] 2025-10-12 07:57:57,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:58:11] 2025-10-12 07:57:57,694 | INFO     | traces error code: 0
[2025-10-12 03:58:11] 2025-10-12 07:57:57,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:58:11] 2025-10-12 07:58:10,835 | INFO     | PID=14790 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 03:58:11] 2025-10-12 07:58:10,836 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:58:11] 2025-10-12 07:58:10,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:58:11] 2025-10-12 07:58:10,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:58:11] 2025-10-12 07:58:10,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:58:11] 2025-10-12 07:58:10,836 | INFO     | [monitor] control thread has ended
[2025-10-12 03:58:11] 2025-10-12 07:58:10,938 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:58:11] 2025-10-12 07:58:10,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:58:11] 2025-10-12 07:58:10,946 [wrapper] pilotpid: 14790
[2025-10-12 03:58:11] 2025-10-12 07:58:10,949 [wrapper] Pilot exit status: 0
[2025-10-12 03:58:11] 2025-10-12 07:58:10,964 [wrapper] pandaids: 6839387127
[2025-10-12 03:58:11] 2025-10-12 07:58:11,004 [wrapper] cleanup supervisor_pilot 20392 14791
[2025-10-12 03:58:11] 2025-10-12 07:58:11,009 [wrapper] Test setup, not cleaning
[2025-10-12 03:58:11] 2025-10-12 07:58:11,013 [wrapper] apfmon messages muted
[2025-10-12 03:58:11] 2025-10-12 07:58:11,017 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:58:11] 2025-10-12 07:58:11,021 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:58:11]  *** Error codes and diagnostics ***
[2025-10-12 03:58:11]     "exeErrorCode": 0,
[2025-10-12 03:58:11]     "exeErrorDiag": "",
[2025-10-12 03:58:11]     "pilotErrorCode": 0,
[2025-10-12 03:58:11]     "pilotErrorDiag": "",
[2025-10-12 03:58:11]  *** Listing of results directory ***
[2025-10-12 03:58:11] total 414920
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas    563267 Oct  7 03:02 pilot3.tar.gz
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:14 queuedata.json
[2025-10-12 03:58:11] -rwx------ 1 boincer umatlas     36292 Oct 12 00:15 runpilot2-wrapper.sh
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas       100 Oct 12 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:58:11] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 02:39 run_atlas
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas       105 Oct 12 02:39 job.xml
[2025-10-12 03:58:11] -rw-r--r-- 2 boincer umatlas 220814932 Oct 12 02:39 EVNT.46676267._003285.pool.root.1
[2025-10-12 03:58:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 02:39 start_atlas.sh
[2025-10-12 03:58:11] drwxrwx--x 2 boincer umatlas      4096 Oct 12 02:39 shared
[2025-10-12 03:58:11] -rw-r--r-- 2 boincer umatlas    576707 Oct 12 02:39 input.tar.gz
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas         0 Oct 12 02:39 boinc_lockfile
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas      2551 Oct 12 02:39 pandaJob.out
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas    975528 Oct 12 02:39 agis_schedconf.cvmfs.json
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas   1560580 Oct 12 02:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:58:11] drwx------ 4 boincer umatlas      4096 Oct 12 02:39 pilot3
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 03:54 init_data.xml
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas 198044484 Oct 12 03:56 HITS.46676269._071058.pool.root.1
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas       529 Oct 12 03:57 boinc_task_state.xml
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas      1050 Oct 12 03:57 memory_monitor_summary.json
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas    379613 Oct 12 03:57 log.46676269._071058.job.log.tgz.1
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas      7869 Oct 12 03:57 heartbeat.json
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas        27 Oct 12 03:57 wrapper_checkpoint.txt
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 03:57 boinc_mmap_file
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas        95 Oct 12 03:58 pilot_heartbeat.json
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas       745 Oct 12 03:58 pilotlog.txt
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas    674238 Oct 12 03:58 log.46676269._071058.job.log.1
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas       357 Oct 12 03:58 output.list
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas       620 Oct 12 03:58 runtime_log
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas   1075200 Oct 12 03:58 result.tar.gz
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 03:58 runtime_log.err
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas       658 Oct 12 03:58 LIHMDmUf2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYbiNDmuP3Xsn.diag
[2025-10-12 03:58:11] -rw-r--r-- 1 boincer umatlas     21839 Oct 12 03:58 stderr.txt
[2025-10-12 03:58:11] HITS file was successfully produced:
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas 198044484 Oct 12 03:56 shared/HITS.pool.root.1
[2025-10-12 03:58:11]  *** Contents of shared directory: ***
[2025-10-12 03:58:11] total 410684
[2025-10-12 03:58:11] -rw-r--r-- 2 boincer umatlas 220814932 Oct 12 02:39 ATLAS.root_0
[2025-10-12 03:58:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 02:39 start_atlas.sh
[2025-10-12 03:58:11] -rw-r--r-- 2 boincer umatlas    576707 Oct 12 02:39 input.tar.gz
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas 198044484 Oct 12 03:56 HITS.pool.root.1
[2025-10-12 03:58:11] -rw------- 1 boincer umatlas   1075200 Oct 12 03:58 result.tar.gz
03:58:12 (11114): run_atlas exited; CPU time 48692.772090
03:58:12 (11114): called boinc_finish(0)

</stderr_txt>
]]>

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