Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:46:01 (2299284): wrapper (7.7.26015): starting
17:46:01 (2299284): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 17:46:01] Arguments: --nthreads 2
[2025-10-12 17:46:01] Threads: 2
[2025-10-12 17:46:01] Checking for CVMFS
[2025-10-12 17:46:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:46:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:46:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:46:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:46:01] 2.9.2.0 1266339 4512 59992 151625 0 57 27501770 36864001 0 130560 0 2724589 99.988 154344 735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 17:46:01] CVMFS is ok
[2025-10-12 17:46:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:46:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:46:01] Further information can be found at the LHC@home message board.
[2025-10-12 17:46:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:46:01] Checking for apptainer binary...
[2025-10-12 17:46:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:46:01] Running /usr/bin/apptainer --version
[2025-10-12 17:46:01] apptainer version 1.4.1-1.1
[2025-10-12 17:46:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:46:01] atlasA219
[2025-10-12 17:46:01] apptainer works
[2025-10-12 17:46:01] Set ATHENA_PROC_NUMBER=2
[2025-10-12 17:46:01] Set ATHENA_CORE_NUMBER=2
[2025-10-12 17:46:01] Starting ATLAS job with PandaID=6839387119
[2025-10-12 17:46:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:45:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | job 6839387119 has completed (purged errors)
[2025-10-12 19:45:37] 2025-10-12 17:45:04,352 | INFO     | overall cleanup function is called
[2025-10-12 19:45:37] 2025-10-12 17:45:05,358 | INFO     | --- collectZombieJob: --- 10, [2309402]
[2025-10-12 19:45:37] 2025-10-12 17:45:05,359 | INFO     | zombie collector waiting for pid 2309402
[2025-10-12 19:45:37] 2025-10-12 17:45:05,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:45:37] 2025-10-12 17:45:05,359 | INFO     | collected zombie processes
[2025-10-12 19:45:37] 2025-10-12 17:45:05,359 | INFO     | will attempt to kill all subprocesses of pid=2309402
[2025-10-12 19:45:37] 2025-10-12 17:45:05,393 | INFO     | process IDs to be killed: [2309402] (in reverse order)
[2025-10-12 19:45:37] 2025-10-12 17:45:05,415 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:45:37] 2025-10-12 17:45:05,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:45:37] 2025-10-12 17:45:05,416 | INFO     | did not find any defunct processes belonging to 2309402
[2025-10-12 19:45:37] 2025-10-12 17:45:05,416 | INFO     | did not find any defunct processes belonging to 2309402
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | ready for new job
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | ***************************************
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | ***************************************
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | 
[2025-10-12 19:45:37] 2025-10-12 17:45:05,417 | INFO     | architecture information:
[2025-10-12 19:45:37] 2025-10-12 17:45:05,418 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:45:37] 2025-10-12 17:45:05,426 | INFO     | cat /etc/os-release:
[2025-10-12 19:45:37] NAME="CentOS Linux"
[2025-10-12 19:45:37] VERSION="7 (Core)"
[2025-10-12 19:45:37] ID="centos"
[2025-10-12 19:45:37] ID_LIKE="rhel fedora"
[2025-10-12 19:45:37] VERSION_ID="7"
[2025-10-12 19:45:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:45:37] ANSI_COLOR="0;31"
[2025-10-12 19:45:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:45:37] HOME_URL="https://www.centos.org/"
[2025-10-12 19:45:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:45:37] 
[2025-10-12 19:45:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:45:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:45:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:45:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:45:37] 
[2025-10-12 19:45:37] 2025-10-12 17:45:05,426 | INFO     | ***************************************
[2025-10-12 19:45:37] 2025-10-12 17:45:05,929 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | INFO     | sufficient remaining disk space (182562324480 B)
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | INFO     | update_server=False
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | INFO     | aborting loop
[2025-10-12 19:45:37] 2025-10-12 17:45:05,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:45:37] 2025-10-12 17:45:05,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:45:37] 2025-10-12 17:45:06,128 | INFO     | all job control threads have been joined
[2025-10-12 19:45:37] 2025-10-12 17:45:06,151 | INFO     | all payload control threads have been joined
[2025-10-12 19:45:37] 2025-10-12 17:45:06,494 | INFO     | all data control threads have been joined
[2025-10-12 19:45:37] 2025-10-12 17:45:06,948 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:06,949 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:06,950 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:06,950 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:06,981 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,134 | INFO     | [job] control thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,157 | INFO     | [payload] control thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,298 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,497 | INFO     | [data] control thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:45:37] 2025-10-12 17:45:07,841 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,904 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:07,949 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:08,076 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:08,085 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:08,264 | INFO     | [job] validate thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:11,833 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:45:37] 2025-10-12 17:45:24,917 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:45:37] 2025-10-12 17:45:26,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140545993332544)>', '<ExcThread(monitor, started 140545422784256)>']
[2025-10-12 19:45:37] 2025-10-12 17:45:31,238 | INFO     | all workflow threads have been joined
[2025-10-12 19:45:37] 2025-10-12 17:45:31,239 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:45:37] 2025-10-12 17:45:31,239 | INFO     | traces error code: 0
[2025-10-12 19:45:37] 2025-10-12 17:45:31,240 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:45:37] 2025-10-12 17:45:36,427 | INFO     | PID=2302990 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:45:37] 2025-10-12 17:45:36,440 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:45:37] 2025-10-12 17:45:36,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:45:37] 2025-10-12 17:45:36,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:45:37] 2025-10-12 17:45:36,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:45:37] 2025-10-12 17:45:36,440 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 19:45:37] 2025-10-12 17:45:36,440 | INFO     | [monitor] control thread has ended
[2025-10-12 19:45:37] 2025-10-12 17:45:36,481 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:45:37] 2025-10-12 17:45:36,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:45:37] 2025-10-12 17:45:36,486 [wrapper] pilotpid: 2302990
[2025-10-12 19:45:37] 2025-10-12 17:45:36,488 [wrapper] Pilot exit status: 0
[2025-10-12 19:45:37] 2025-10-12 17:45:36,495 [wrapper] pandaids: 6839387119
[2025-10-12 19:45:37] 2025-10-12 17:45:36,508 [wrapper] cleanup supervisor_pilot 2324184 2302991
[2025-10-12 19:45:37] 2025-10-12 17:45:36,510 [wrapper] Test setup, not cleaning
[2025-10-12 19:45:37] 2025-10-12 17:45:36,512 [wrapper] apfmon messages muted
[2025-10-12 19:45:37] 2025-10-12 17:45:36,514 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:45:37] 2025-10-12 17:45:36,516 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:45:37]  *** Error codes and diagnostics ***
[2025-10-12 19:45:37]     "exeErrorCode": 0,
[2025-10-12 19:45:37]     "exeErrorDiag": "",
[2025-10-12 19:45:37]     "pilotErrorCode": 0,
[2025-10-12 19:45:37]     "pilotErrorDiag": "",
[2025-10-12 19:45:37]  *** Listing of results directory ***
[2025-10-12 19:45:37] total 405456
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:11 pilot3.tar.gz
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:14 queuedata.json
[2025-10-12 19:45:37] -rwx------ 1 boinc boinc     36292 Oct 12 06:15 runpilot2-wrapper.sh
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:45:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:46 run_atlas
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:46 job.xml
[2025-10-12 19:45:37] -rw-r--r-- 2 boinc boinc 220959647 Oct 12 17:46 EVNT.46676267._003284.pool.root.1
[2025-10-12 19:45:37] -rw-r--r-- 2 boinc boinc    569679 Oct 12 17:46 input.tar.gz
[2025-10-12 19:45:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:46 start_atlas.sh
[2025-10-12 19:45:37] drwxrwx--x 2 boinc boinc      4096 Oct 12 17:46 shared
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:46 boinc_setup_complete
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc      6208 Oct 12 17:46 init_data.xml
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:46 boinc_lockfile
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc      2551 Oct 12 17:46 pandaJob.out
[2025-10-12 19:45:37] -rw------- 1 boinc boinc    975528 Oct 12 17:46 agis_schedconf.cvmfs.json
[2025-10-12 19:45:37] -rw------- 1 boinc boinc   1560580 Oct 12 17:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:45:37] drwx------ 5 boinc boinc      4096 Oct 12 17:46 pilot3
[2025-10-12 19:45:37] -rw------- 1 boinc boinc 187729801 Oct 12 19:44 HITS.46676269._071050.pool.root.1
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:44 boinc_task_state.xml
[2025-10-12 19:45:37] -rw------- 1 boinc boinc      1029 Oct 12 19:44 memory_monitor_summary.json
[2025-10-12 19:45:37] -rw------- 1 boinc boinc    280392 Oct 12 19:44 log.46676269._071050.job.log.tgz.1
[2025-10-12 19:45:37] -rw------- 1 boinc boinc      7761 Oct 12 19:45 heartbeat.json
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:45 boinc_mmap_file
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:45 wrapper_checkpoint.txt
[2025-10-12 19:45:37] -rw------- 1 boinc boinc       817 Oct 12 19:45 pilotlog.txt
[2025-10-12 19:45:37] -rw------- 1 boinc boinc        95 Oct 12 19:45 pilot_heartbeat.json
[2025-10-12 19:45:37] -rw------- 1 boinc boinc   1023432 Oct 12 19:45 log.46676269._071050.job.log.1
[2025-10-12 19:45:37] -rw------- 1 boinc boinc       357 Oct 12 19:45 output.list
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:45 runtime_log
[2025-10-12 19:45:37] -rw------- 1 boinc boinc   1320960 Oct 12 19:45 result.tar.gz
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc      8792 Oct 12 19:45 runtime_log.err
[2025-10-12 19:45:37] -rw------- 1 boinc boinc       663 Oct 12 19:45 e47LDmUf2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRbiNDmLQHOBo.diag
[2025-10-12 19:45:37] -rw-r--r-- 1 boinc boinc     11410 Oct 12 19:45 stderr.txt
[2025-10-12 19:45:37] HITS file was successfully produced:
[2025-10-12 19:45:37] -rw------- 1 boinc boinc 187729801 Oct 12 19:44 shared/HITS.pool.root.1
[2025-10-12 19:45:37]  *** Contents of shared directory: ***
[2025-10-12 19:45:37] total 400992
[2025-10-12 19:45:37] -rw-r--r-- 2 boinc boinc 220959647 Oct 12 17:46 ATLAS.root_0
[2025-10-12 19:45:37] -rw-r--r-- 2 boinc boinc    569679 Oct 12 17:46 input.tar.gz
[2025-10-12 19:45:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:46 start_atlas.sh
[2025-10-12 19:45:37] -rw------- 1 boinc boinc 187729801 Oct 12 19:44 HITS.pool.root.1
[2025-10-12 19:45:37] -rw------- 1 boinc boinc   1320960 Oct 12 19:45 result.tar.gz
19:45:39 (2299284): run_atlas exited; CPU time 13832.812909
19:45:39 (2299284): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN