Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:34:18 (1123700): wrapper (7.7.26015): starting
02:34:18 (1123700): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 02:34:18] Arguments: --nthreads 12
[2025-10-12 02:34:18] Threads: 12
[2025-10-12 02:34:18] Checking for CVMFS
[2025-10-12 02:34:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:34:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:34:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:34:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:34:18] 2.13.2.0 3683012 12433 151584 151611 2 196 36927335 40960001 8220 16776704 0 139056404 99.854 55059000 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 02:34:18] CVMFS is ok
[2025-10-12 02:34:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:34:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:34:18] Further information can be found at the LHC@home message board.
[2025-10-12 02:34:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:34:18] Checking for apptainer binary...
[2025-10-12 02:34:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:34:18] Running /usr/bin/apptainer --version
[2025-10-12 02:34:18] apptainer version 1.4.3-1.el9
[2025-10-12 02:34:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:34:18] c8-7-4.aglt2.org
[2025-10-12 02:34:18] apptainer works
[2025-10-12 02:34:18] Set ATHENA_PROC_NUMBER=12
[2025-10-12 02:34:18] Set ATHENA_CORE_NUMBER=12
[2025-10-12 02:34:18] Starting ATLAS job with PandaID=6838990074
[2025-10-12 02:34:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:06:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:06:37]  workdir=None
[2025-10-12 03:06:37] ]
[2025-10-12 03:06:37] 2025-10-12 07:05:59,489 | INFO     | transferring file log.46676269._065795.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6838990074/log.46676269._065795.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 03:06:37] 2025-10-12 07:05:59,489 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6838990074/log.46676269._065795.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._065795.job
[2025-10-12 03:06:37] 2025-10-12 07:05:59,503 | INFO     | adding to output.list: log.46676269._065795.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/8e/log.46676269._065795.job.log.tg
[2025-10-12 03:06:37] 2025-10-12 07:05:59,504 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 03:06:37] 2025-10-12 07:05:59,504 | INFO     | summary of transferred files:
[2025-10-12 03:06:37] 2025-10-12 07:05:59,504 | INFO     |  -- lfn=log.46676269._065795.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 03:06:37] 2025-10-12 07:05:59,504 | INFO     | stage-out finished correctly
[2025-10-12 03:06:37] 2025-10-12 07:05:59,547 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 03:06:37] 2025-10-12 07:05:59,676 | INFO     | time since job start (1894s) is within the limit (172800.0s)
[2025-10-12 03:06:37] 2025-10-12 07:06:01,682 | INFO     | time since job start (1896s) is within the limit (172800.0s)
[2025-10-12 03:06:37] 2025-10-12 07:06:02,190 | INFO     | job 6838990074 has state=finished
[2025-10-12 03:06:37] 2025-10-12 07:06:02,190 | INFO     | preparing for final server update for job 6838990074 in state='finished'
[2025-10-12 03:06:37] 2025-10-12 07:06:02,191 | INFO     | this job has now completed (state=finished)
[2025-10-12 03:06:37] 2025-10-12 07:06:02,191 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 03:06:37] 2025-10-12 07:06:02,191 | INFO     | log transfer has been attempted: DONE
[2025-10-12 03:06:37] 2025-10-12 07:06:02,191 | INFO     | job 6838990074 has finished - writing final server update
[2025-10-12 03:06:37] 2025-10-12 07:06:02,191 | INFO     | total number of processed events: 400 (read)
[2025-10-12 03:06:37] 2025-10-12 07:06:02,191 | INFO     | executing command: lscpu
[2025-10-12 03:06:37] 2025-10-12 07:06:02,255 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 03:06:37] 2025-10-12 07:06:03,687 | INFO     | time since job start (1898s) is within the limit (172800.0s)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,300 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 03:06:37] 2025-10-12 07:06:05,307 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3585.328499999994
[2025-10-12 03:06:37] 2025-10-12 07:06:05,335 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6838990074/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,336 | INFO     | extracted standard info from prmon json
[2025-10-12 03:06:37] 2025-10-12 07:06:05,337 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:06:37] 2025-10-12 07:06:05,337 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:06:37] 2025-10-12 07:06:05,337 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:06:37] 2025-10-12 07:06:05,337 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | sum of square deviations: 4279150.0
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | sum of deviations: 47665461.0
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | mean x: 1760251891.5
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | mean y: 2381137.5833333335
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | -- intersect: -19605068445.738
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | intersect: -19605068445.738
[2025-10-12 03:06:37] 2025-10-12 07:06:05,338 | INFO     | chi2: 0.0012867745427343812
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | -- intersect: -19605068445.738
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | current memory leak: 11.14 B/s (using 24 data points, chi2=0.00)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | could have reported an average CPU frequency of 3547 MHz (5 samples)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | ..............................
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . Timing measurements:
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . get job = 0 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . initial setup = 1 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . payload setup = 3 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . stage-in = 0 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . payload execution = 1873 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . stage-out = 0 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,339 | INFO     | . log creation = 0 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,340 | INFO     | ..............................
[2025-10-12 03:06:37] 2025-10-12 07:06:05,394 | INFO     | 
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | job summary report
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | --------------------------------------------------
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | PanDA job id: 6838990074
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | task id: 46676269
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | errors: (none)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | pilot state: finished 
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | transexitcode: 0
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | exeerrorcode: 0
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | exeerrordiag: 
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | exitcode: 0
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | exitmsg: OK
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | cpuconsumptiontime: 19713 s
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | nevents: 400
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | neventsw: 0
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | pid: 1136496
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | pgrp: 1136496
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | corecount: 12
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | event service: False
[2025-10-12 03:06:37] 2025-10-12 07:06:05,395 | INFO     | sizes: {0: 2348857, 2: 2349119, 10: 2349147, 1880: 2374095, 1881: 2383149, 1886: 2383319}
[2025-10-12 03:06:37] 2025-10-12 07:06:05,396 | INFO     | --------------------------------------------------
[2025-10-12 03:06:37] 2025-10-12 07:06:05,396 | INFO     | 
[2025-10-12 03:06:37] 2025-10-12 07:06:05,396 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 03:06:37] 2025-10-12 07:06:05,414 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:06:37] 2025-10-12 07:06:05,416 | INFO     | job 6838990074 has completed (purged errors)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,416 | INFO     | overall cleanup function is called
[2025-10-12 03:06:37] 2025-10-12 07:06:05,630 | WARNING  | process 1136496 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 03:06:37] 2025-10-12 07:06:05,913 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,913 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,913 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 03:06:37] 2025-10-12 07:06:05,913 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 03:06:37] 2025-10-12 07:06:05,914 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/5/PanDA_Pilot-6838990074/payload.stdout) since it has not been created yet
[2025-10-12 03:06:37] 2025-10-12 07:06:05,914 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 03:06:37] 2025-10-12 07:06:05,928 | INFO     | sufficient remaining disk space (167618019328 B)
[2025-10-12 03:06:37] 2025-10-12 07:06:05,928 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-12 03:06:37] 2025-10-12 07:06:05,928 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/5/PanDA_Pilot-6838990074/HITS.46676269._065795.pool.root.1 since it does not exist
[2025-10-12 03:06:37] 2025-10-12 07:06:06,268 | INFO     | number of running child processes to parent process 1136496: 1
[2025-10-12 03:06:37] 2025-10-12 07:06:06,269 | INFO     | maximum number of monitored processes: 6
[2025-10-12 03:06:37] 2025-10-12 07:06:06,269 | INFO     | aborting job monitoring since job object (job id=6838990074) has expired
[2025-10-12 03:06:37] 2025-10-12 07:06:06,424 | INFO     | --- collectZombieJob: --- 10, [1136496]
[2025-10-12 03:06:37] 2025-10-12 07:06:06,424 | INFO     | zombie collector waiting for pid 1136496
[2025-10-12 03:06:37] 2025-10-12 07:06:06,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:06:37] 2025-10-12 07:06:06,424 | INFO     | collected zombie processes
[2025-10-12 03:06:37] 2025-10-12 07:06:06,424 | INFO     | will attempt to kill all subprocesses of pid=1136496
[2025-10-12 03:06:37] 2025-10-12 07:06:06,761 | INFO     | process IDs to be killed: [1136496] (in reverse order)
[2025-10-12 03:06:37] 2025-10-12 07:06:06,881 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:06:37] 2025-10-12 07:06:06,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:06:37] 2025-10-12 07:06:06,896 | INFO     | did not find any defunct processes belonging to 1136496
[2025-10-12 03:06:37] 2025-10-12 07:06:06,910 | INFO     | did not find any defunct processes belonging to 1136496
[2025-10-12 03:06:37] 2025-10-12 07:06:06,910 | INFO     | ready for new job
[2025-10-12 03:06:37] 2025-10-12 07:06:06,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:06:37] 2025-10-12 07:06:06,912 | INFO     | ***************************************
[2025-10-12 03:06:37] 2025-10-12 07:06:06,912 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:06:37] 2025-10-12 07:06:06,912 | INFO     | ***************************************
[2025-10-12 03:06:37] 2025-10-12 07:06:06,912 | INFO     | 
[2025-10-12 03:06:37] 2025-10-12 07:06:06,929 | INFO     | architecture information:
[2025-10-12 03:06:37] 2025-10-12 07:06:06,929 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:06:37] 2025-10-12 07:06:06,943 | INFO     | cat /etc/os-release:
[2025-10-12 03:06:37] NAME="CentOS Linux"
[2025-10-12 03:06:37] VERSION="7 (Core)"
[2025-10-12 03:06:37] ID="centos"
[2025-10-12 03:06:37] ID_LIKE="rhel fedora"
[2025-10-12 03:06:37] VERSION_ID="7"
[2025-10-12 03:06:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:06:37] ANSI_COLOR="0;31"
[2025-10-12 03:06:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:06:37] HOME_URL="https://www.centos.org/"
[2025-10-12 03:06:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:06:37] 
[2025-10-12 03:06:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:06:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:06:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:06:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:06:37] 
[2025-10-12 03:06:37] 2025-10-12 07:06:06,943 | INFO     | ***************************************
[2025-10-12 03:06:37] 2025-10-12 07:06:07,446 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 03:06:37] 2025-10-12 07:06:07,463 | INFO     | sufficient remaining disk space (167615922176 B)
[2025-10-12 03:06:37] 2025-10-12 07:06:07,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:06:37] 2025-10-12 07:06:07,463 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:06:37] 2025-10-12 07:06:07,463 | INFO     | update_server=False
[2025-10-12 03:06:37] 2025-10-12 07:06:07,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:06:37] 2025-10-12 07:06:07,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:06:37] 2025-10-12 07:06:07,464 | INFO     | aborting loop
[2025-10-12 03:06:37] 2025-10-12 07:06:07,558 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:06:37] 2025-10-12 07:06:07,604 | INFO     | all payload control threads have been joined
[2025-10-12 03:06:37] 2025-10-12 07:06:08,354 | INFO     | all data control threads have been joined
[2025-10-12 03:06:37] 2025-10-12 07:06:08,469 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:08,469 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:08,610 | INFO     | [payload] control thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:08,807 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:08,949 | INFO     | [job] validate thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,004 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,030 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,049 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,134 | INFO     | all job control threads have been joined
[2025-10-12 03:06:37] 2025-10-12 07:06:09,206 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,359 | INFO     | [data] control thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,563 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:09,688 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:10,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:06:37] 2025-10-12 07:06:10,140 | INFO     | [job] control thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:10,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:06:37] 2025-10-12 07:06:11,410 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:14,116 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:17,948 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:06:37] 2025-10-12 07:06:18,951 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:06:37] 2025-10-12 07:06:27,887 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:06:37] 2025-10-12 07:06:29,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665884309312)>', '<ExcThread(monitor, started 140665254037248)>']
[2025-10-12 03:06:37] 2025-10-12 07:06:34,118 | INFO     | all workflow threads have been joined
[2025-10-12 03:06:37] 2025-10-12 07:06:34,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:06:37] 2025-10-12 07:06:34,118 | INFO     | traces error code: 0
[2025-10-12 03:06:37] 2025-10-12 07:06:34,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | INFO     | PID=1129861 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | INFO     | .. there are 12 such processes running
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:06:37] 2025-10-12 07:06:37,212 | INFO     | [monitor] control thread has ended
[2025-10-12 03:06:37] 2025-10-12 07:06:37,297 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:06:37] 2025-10-12 07:06:37,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:06:37] 2025-10-12 07:06:37,302 [wrapper] pilotpid: 1129861
[2025-10-12 03:06:37] 2025-10-12 07:06:37,305 [wrapper] Pilot exit status: 0
[2025-10-12 03:06:37] 2025-10-12 07:06:37,314 [wrapper] pandaids: 6838990074
[2025-10-12 03:06:37] 2025-10-12 07:06:37,401 [wrapper] cleanup supervisor_pilot 1311578 1129862
[2025-10-12 03:06:37] 2025-10-12 07:06:37,404 [wrapper] Test setup, not cleaning
[2025-10-12 03:06:37] 2025-10-12 07:06:37,406 [wrapper] apfmon messages muted
[2025-10-12 03:06:37] 2025-10-12 07:06:37,408 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:06:37] 2025-10-12 07:06:37,410 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:06:37]  *** Error codes and diagnostics ***
[2025-10-12 03:06:37]     "exeErrorCode": 0,
[2025-10-12 03:06:37]     "exeErrorDiag": "",
[2025-10-12 03:06:37]     "pilotErrorCode": 0,
[2025-10-12 03:06:37]     "pilotErrorDiag": "",
[2025-10-12 03:06:37]  *** Listing of results directory ***
[2025-10-12 03:06:37] total 406352
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 18:04 pilot3.tar.gz
[2025-10-12 03:06:37] -rwx------. 1 boincer umatlas     36292 Oct 11 18:06 runpilot2-wrapper.sh
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 18:06 queuedata.json
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas       100 Oct 12 02:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:06:37] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 02:34 run_atlas
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas       105 Oct 12 02:34 job.xml
[2025-10-12 03:06:37] -rw-r--r--. 2 boincer umatlas 221537943 Oct 12 02:34 EVNT.46676267._002643.pool.root.1
[2025-10-12 03:06:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 02:34 start_atlas.sh
[2025-10-12 03:06:37] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 02:34 shared
[2025-10-12 03:06:37] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 02:34 input.tar.gz
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas         0 Oct 12 02:34 boinc_lockfile
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 02:34 pandaJob.out
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas    975528 Oct 12 02:34 agis_schedconf.cvmfs.json
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas   1560580 Oct 12 02:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:06:37] drwx------. 5 boincer umatlas      4096 Oct 12 02:34 pilot3
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 03:00 init_data.xml
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas 189352938 Oct 12 03:05 HITS.46676269._065795.pool.root.1
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas       529 Oct 12 03:05 boinc_task_state.xml
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas      1028 Oct 12 03:05 memory_monitor_summary.json
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas    343301 Oct 12 03:05 log.46676269._065795.job.log.tgz.1
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas        95 Oct 12 03:06 pilot_heartbeat.json
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas      7769 Oct 12 03:06 heartbeat.json
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas       823 Oct 12 03:06 pilotlog.txt
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas        27 Oct 12 03:06 wrapper_checkpoint.txt
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 03:06 boinc_mmap_file
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas    312713 Oct 12 03:06 log.46676269._065795.job.log.1
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas       357 Oct 12 03:06 output.list
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas       620 Oct 12 03:06 runtime_log
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas    675840 Oct 12 03:06 result.tar.gz
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas       648 Oct 12 03:06 tP7LDm0uwR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtgSMDmQkUr7n.diag
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 03:06 runtime_log.err
[2025-10-12 03:06:37] -rw-r--r--. 1 boincer umatlas     22371 Oct 12 03:06 stderr.txt
[2025-10-12 03:06:37] HITS file was successfully produced:
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas 189352938 Oct 12 03:05 shared/HITS.pool.root.1
[2025-10-12 03:06:37]  *** Contents of shared directory: ***
[2025-10-12 03:06:37] total 402508
[2025-10-12 03:06:37] -rw-r--r--. 2 boincer umatlas 221537943 Oct 12 02:34 ATLAS.root_0
[2025-10-12 03:06:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 02:34 start_atlas.sh
[2025-10-12 03:06:37] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 02:34 input.tar.gz
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas 189352938 Oct 12 03:05 HITS.pool.root.1
[2025-10-12 03:06:37] -rw-------. 1 boincer umatlas    675840 Oct 12 03:06 result.tar.gz
03:06:39 (1123700): run_atlas exited; CPU time 19736.386299
03:06:39 (1123700): called boinc_finish(0)

</stderr_txt>
]]>

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