Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:26:32 (732039): wrapper (7.7.26015): starting
16:26:32 (732039): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 16:26:32] Arguments: --nthreads 4
[2025-10-13 16:26:32] Threads: 4
[2025-10-13 16:26:32] Checking for CVMFS
[2025-10-13 16:26:32] No cvmfs_config command found, will try listing directly
[2025-10-13 16:26:32] CVMFS is ok
[2025-10-13 16:26:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:26:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:26:32] Further information can be found at the LHC@home message board.
[2025-10-13 16:26:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:26:32] Checking for apptainer binary...
[2025-10-13 16:26:32] which: no apptainer in ((null))
[2025-10-13 16:26:32] apptainer is not installed, using version from CVMFS
[2025-10-13 16:26:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:26:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-10-13 16:26:32] apptainer works
[2025-10-13 16:26:32] Set ATHENA_PROC_NUMBER=4
[2025-10-13 16:26:32] Set ATHENA_CORE_NUMBER=4
[2025-10-13 16:26:32] Starting ATLAS job with PandaID=6839386597
[2025-10-13 16:26:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:48:57 (1055252): wrapper (7.7.26015): starting
18:48:57 (1055252): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 18:48:57] Arguments: --nthreads 4
[2025-10-13 18:48:57] Threads: 4
[2025-10-13 18:48:57] This job has been restarted, cleaning up previous attempt
[2025-10-13 18:48:57] Checking for CVMFS
[2025-10-13 18:48:57] No cvmfs_config command found, will try listing directly
[2025-10-13 18:48:57] CVMFS is ok
[2025-10-13 18:48:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:48:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:48:57] Further information can be found at the LHC@home message board.
[2025-10-13 18:48:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:48:57] Checking for apptainer binary...
[2025-10-13 18:48:57] which: no apptainer in ((null))
[2025-10-13 18:48:57] apptainer is not installed, using version from CVMFS
[2025-10-13 18:48:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:48:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-10-13 18:48:58] apptainer works
[2025-10-13 18:48:58] Set ATHENA_PROC_NUMBER=4
[2025-10-13 18:48:58] Set ATHENA_CORE_NUMBER=4
[2025-10-13 18:48:58] Starting ATLAS job with PandaID=6839386597
[2025-10-13 18:48:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:27:56]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:27:56] 2025-10-13 19:13:03,907 | INFO     | chi2: 0.03230436934627619
[2025-10-13 21:27:56] 2025-10-13 19:13:03,907 | INFO     | current chi2=0.03230436934627619 (change=97.19843357949121 %)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,907 | INFO     | sum of square deviations: 697054930.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,908 | INFO     | sum of deviations: -2070176520.0000002
[2025-10-13 21:27:56] 2025-10-13 19:13:03,908 | INFO     | mean x: 1760378756.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,908 | INFO     | mean y: 2341792.2213740456
[2025-10-13 21:27:56] 2025-10-13 19:13:03,908 | INFO     | -- intersect: 5230473192.106904
[2025-10-13 21:27:56] 2025-10-13 19:13:03,908 | INFO     | intersect: 5230473192.106904
[2025-10-13 21:27:56] 2025-10-13 19:13:03,908 | INFO     | chi2: 0.009284976227764957
[2025-10-13 21:27:56] 2025-10-13 19:13:03,909 | INFO     | current chi2=0.009284976227764957 (change=71.25783163188338 %)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,909 | INFO     | sum of square deviations: 620244187.5
[2025-10-13 21:27:56] 2025-10-13 19:13:03,909 | INFO     | sum of deviations: -814068850.9999999
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | mean x: 1760378908.5
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | mean y: 2339296.015873016
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | -- intersect: 2312831944.31212
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | intersect: 2312831944.31212
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | chi2: 0.006509592432562136
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | current chi2=0.006509592432562136 (change=29.891124404859138 %)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,910 | INFO     | sum of square deviations: 549294020.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,911 | INFO     | sum of deviations: 383462592.0000006
[2025-10-13 21:27:56] 2025-10-13 19:13:03,911 | INFO     | mean x: 1760379061.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,911 | INFO     | mean y: 2336720.876033058
[2025-10-13 21:27:56] 2025-10-13 19:13:03,911 | INFO     | -- intersect: -1226585300.9467916
[2025-10-13 21:27:56] 2025-10-13 19:13:03,911 | INFO     | intersect: -1226585300.9467916
[2025-10-13 21:27:56] 2025-10-13 19:13:03,912 | INFO     | chi2: 0.0029918593027785483
[2025-10-13 21:27:56] 2025-10-13 19:13:03,912 | INFO     | current chi2=0.0029918593027785483 (change=54.03922236647662 %)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,912 | INFO     | sum of square deviations: 483971865.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | sum of deviations: 1065038985.5
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | mean x: 1760379213.5
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | mean y: 2335159.025862069
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | -- intersect: -3871593528.2157564
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | intersect: -3871593528.2157564
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | chi2: 0.00025530928594129793
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | current chi2=0.00025530928594129793 (change=91.46653434858412 %)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,913 | INFO     | sum of square deviations: 424045160.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,914 | INFO     | sum of deviations: 971203509.0000002
[2025-10-13 21:27:56] 2025-10-13 19:13:03,914 | INFO     | mean x: 1760379366.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,914 | INFO     | mean y: 2335398.4504504506
[2025-10-13 21:27:56] 2025-10-13 19:13:03,914 | INFO     | -- intersect: -4029514929.5438504
[2025-10-13 21:27:56] 2025-10-13 19:13:03,914 | INFO     | intersect: -4029514929.5438504
[2025-10-13 21:27:56] 2025-10-13 19:13:03,915 | INFO     | chi2: 0.0002498167476246131
[2025-10-13 21:27:56] 2025-10-13 19:13:03,915 | INFO     | current chi2=0.0002498167476246131 (change=2.1513272799437972 %)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,915 | INFO     | left removable region: 60
[2025-10-13 21:27:56] 2025-10-13 19:13:03,915 | INFO     | sum of square deviations: 130793150.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,915 | INFO     | sum of deviations: 343116338.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | mean x: 1760380098.0
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | mean y: 2335614.28
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | -- intersect: -4615759237.888032
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | intersect: -4615759237.888032
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | chi2: 8.825794074705413e-05
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | -- intersect: -4615759237.888032
[2025-10-13 21:27:56] 2025-10-13 19:13:03,916 | INFO     | current memory leak: 2.62 B/s (using 75 data points, chi2=0.00)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | could have reported an average CPU frequency of 2731 MHz (8 samples)
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | ..............................
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | . Timing measurements:
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | . get job = 0 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | . initial setup = 1 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | . payload setup = 7 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | . stage-in = 0 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,917 | INFO     | . payload execution = 8596 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,918 | INFO     | . stage-out = 0 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,918 | INFO     | . log creation = 0 s
[2025-10-13 21:27:56] 2025-10-13 19:13:03,918 | INFO     | ..............................
[2025-10-13 21:27:56] 2025-10-13 19:13:04,009 | INFO     | 
[2025-10-13 21:27:56] 2025-10-13 19:13:04,009 | INFO     | job summary report
[2025-10-13 21:27:56] 2025-10-13 19:13:04,009 | INFO     | --------------------------------------------------
[2025-10-13 21:27:56] 2025-10-13 19:13:04,009 | INFO     | PanDA job id: 6839386597
[2025-10-13 21:27:56] 2025-10-13 19:13:04,009 | INFO     | task id: 46676269
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | errors: (none)
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | pilot state: finished 
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | transexitcode: 0
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | exeerrorcode: 0
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | exeerrordiag: 
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | exitcode: 0
[2025-10-13 21:27:56] 2025-10-13 19:13:04,010 | INFO     | exitmsg: OK
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | cpuconsumptiontime: 32898 s
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | nevents: 400
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | neventsw: 0
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | pid: 1078660
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | pgrp: 1078660
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | corecount: 4
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | event service: False
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | sizes: {0: 2348869, 6: 2349131, 11: 2349159, 8608: 2377667, 8609: 2386689, 8610: 2386745, 8617: 2387067}
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | --------------------------------------------------
[2025-10-13 21:27:56] 2025-10-13 19:13:04,011 | INFO     | 
[2025-10-13 21:27:56] 2025-10-13 19:13:04,012 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-10-13 21:27:56] 2025-10-13 19:13:04,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | job 6839386597 has completed (purged errors)
[2025-10-13 21:27:56] 2025-10-13 19:13:04,040 | INFO     | overall cleanup function is called
[2025-10-13 21:27:56] 2025-10-13 19:13:05,050 | INFO     | --- collectZombieJob: --- 10, [1078660]
[2025-10-13 21:27:56] 2025-10-13 19:13:05,050 | INFO     | zombie collector waiting for pid 1078660
[2025-10-13 21:27:56] 2025-10-13 19:13:05,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:27:56] 2025-10-13 19:13:05,050 | INFO     | collected zombie processes
[2025-10-13 21:27:56] 2025-10-13 19:13:05,050 | INFO     | will attempt to kill all subprocesses of pid=1078660
[2025-10-13 21:27:56] 2025-10-13 19:13:05,722 | INFO     | process IDs to be killed: [1078660] (in reverse order)
[2025-10-13 21:27:56] 2025-10-13 19:13:05,981 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:27:56] 2025-10-13 19:13:05,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:27:56] 2025-10-13 19:13:06,012 | INFO     | did not find any defunct processes belonging to 1078660
[2025-10-13 21:27:56] 2025-10-13 19:13:06,037 | INFO     | did not find any defunct processes belonging to 1078660
[2025-10-13 21:27:56] 2025-10-13 19:13:06,037 | INFO     | ready for new job
[2025-10-13 21:27:56] 2025-10-13 19:13:06,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:27:56] 2025-10-13 19:13:06,039 | INFO     | ***************************************
[2025-10-13 21:27:56] 2025-10-13 19:13:06,039 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:27:56] 2025-10-13 19:13:06,039 | INFO     | ***************************************
[2025-10-13 21:27:56] 2025-10-13 19:13:06,039 | INFO     | 
[2025-10-13 21:27:56] 2025-10-13 19:13:06,047 | INFO     | architecture information:
[2025-10-13 21:27:56] 2025-10-13 19:13:06,047 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:27:56] 2025-10-13 19:13:06,066 | INFO     | cat /etc/os-release:
[2025-10-13 21:27:56] NAME="CentOS Linux"
[2025-10-13 21:27:56] VERSION="7 (Core)"
[2025-10-13 21:27:56] ID="centos"
[2025-10-13 21:27:56] ID_LIKE="rhel fedora"
[2025-10-13 21:27:56] VERSION_ID="7"
[2025-10-13 21:27:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:27:56] ANSI_COLOR="0;31"
[2025-10-13 21:27:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:27:56] HOME_URL="https://www.centos.org/"
[2025-10-13 21:27:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:27:56] 
[2025-10-13 21:27:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:27:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:27:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:27:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:27:56] 
[2025-10-13 21:27:56] 2025-10-13 19:13:06,066 | INFO     | ***************************************
[2025-10-13 21:27:56] 2025-10-13 19:13:06,569 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-10-13 21:27:56] 2025-10-13 19:13:06,594 | INFO     | sufficient remaining disk space (3339977752576 B)
[2025-10-13 21:27:56] 2025-10-13 19:13:06,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:27:56] 2025-10-13 19:13:06,595 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:27:56] 2025-10-13 19:13:06,595 | INFO     | update_server=False
[2025-10-13 21:27:56] 2025-10-13 19:13:06,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:27:56] 2025-10-13 19:13:06,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:27:56] 2025-10-13 19:13:06,748 | INFO     | all data control threads have been joined
[2025-10-13 21:27:56] 2025-10-13 19:13:06,971 | INFO     | all payload control threads have been joined
[2025-10-13 21:27:56] 2025-10-13 19:13:07,028 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 21:27:56] 2025-10-13 19:13:07,028 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 21:27:56] 2025-10-13 19:13:07,028 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:27:56] 2025-10-13 19:13:07,028 | INFO     | will abort loop
[2025-10-13 21:27:56] 2025-10-13 19:13:07,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:27:56] 2025-10-13 19:13:07,358 | INFO     | all job control threads have been joined
[2025-10-13 21:27:56] 2025-10-13 19:13:07,601 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:07,612 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:07,753 | INFO     | [data] control thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:07,800 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:07,972 | INFO     | [payload] control thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,010 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,034 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,270 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,364 | INFO     | [job] control thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,434 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,442 | INFO     | [job] validate thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,601 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:08,867 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:09,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:27:56] 2025-10-13 19:13:10,029 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:11,072 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:27:56] 2025-10-13 19:13:22,500 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:27:56] 2025-10-13 19:13:23,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22652144424768)>', '<ExcThread(monitor, started 22651909142272)>']
[2025-10-13 21:27:56] 2025-10-13 19:13:28,524 | INFO     | all workflow threads have been joined
[2025-10-13 21:27:56] 2025-10-13 19:13:28,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:27:56] 2025-10-13 19:13:28,525 | INFO     | traces error code: 0
[2025-10-13 21:27:56] 2025-10-13 19:13:28,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:27:56] 2025-10-13 19:13:37,601 | INFO     | PID=1062008 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:27:56] 2025-10-13 19:13:37,601 | INFO     | .. there are 8 such processes running
[2025-10-13 21:27:56] 2025-10-13 19:13:37,602 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:27:56] 2025-10-13 19:13:37,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:27:56] 2025-10-13 19:13:37,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:27:56] 2025-10-13 19:13:37,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:27:56] 2025-10-13 19:13:37,602 | INFO     | [monitor] control thread has ended
[2025-10-13 21:27:56] 2025-10-13 19:13:37,735 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:27:56] 2025-10-13 19:13:37,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:27:56] 2025-10-13 19:13:37,743 [wrapper] pilotpid: 1062008
[2025-10-13 21:27:56] 2025-10-13 19:13:37,746 [wrapper] Pilot exit status: 0
[2025-10-13 21:27:56] 2025-10-13 19:13:37,760 [wrapper] pandaids: 6839386597 6839386597
[2025-10-13 21:27:56] 2025-10-13 19:13:37,936 [wrapper] cleanup supervisor_pilot 1507220 1062009
[2025-10-13 21:27:56] 2025-10-13 19:13:37,940 [wrapper] Test setup, not cleaning
[2025-10-13 21:27:56] 2025-10-13 19:13:37,944 [wrapper] apfmon messages muted
[2025-10-13 21:27:56] 2025-10-13 19:13:37,948 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:27:56] 2025-10-13 19:13:37,952 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:27:56]  *** Error codes and diagnostics ***
[2025-10-13 21:27:56]     "exeErrorCode": 0,
[2025-10-13 21:27:56]     "exeErrorDiag": "",
[2025-10-13 21:27:56]     "pilotErrorCode": 0,
[2025-10-13 21:27:56]     "pilotErrorDiag": "",
[2025-10-13 21:27:56]  *** Listing of results directory ***
[2025-10-13 21:27:56] total 627836
[2025-10-13 21:27:56] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:11 pilot3.tar.gz
[2025-10-13 21:27:56] -rwx------ 1 boinc boinc     36292 Oct 12 06:14 runpilot2-wrapper.sh
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:14 queuedata.json
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc       100 Oct 13 16:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:27:56] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 16:26 run_atlas
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc       105 Oct 13 16:26 job.xml
[2025-10-13 21:27:56] -rw-r--r-- 3 boinc boinc 222477559 Oct 13 16:26 EVNT.46676267._003262.pool.root.1
[2025-10-13 21:27:56] -rw-r--r-- 3 boinc boinc 222477559 Oct 13 16:26 ATLAS.root_0
[2025-10-13 21:27:56] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:26 start_atlas.sh
[2025-10-13 21:27:56] drwxrwx--x 2 boinc boinc      4096 Oct 13 16:26 shared
[2025-10-13 21:27:56] -rw-r--r-- 2 boinc boinc    569674 Oct 13 16:26 input.tar.gz
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:26 boinc_lockfile
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc      6695 Oct 13 18:48 init_data.xml
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc      2550 Oct 13 18:48 pandaJob.out
[2025-10-13 21:27:56] -rw------- 1 boinc boinc    972783 Oct 13 18:49 agis_schedconf.cvmfs.json
[2025-10-13 21:27:56] -rw------- 1 boinc boinc 190968677 Oct 13 21:12 HITS.46676269._070893.pool.root.1
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:12 boinc_task_state.xml
[2025-10-13 21:27:56] -rw------- 1 boinc boinc      1026 Oct 13 21:12 memory_monitor_summary.json
[2025-10-13 21:27:56] -rw------- 1 boinc boinc   1560580 Oct 13 21:12 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:27:56] -rw------- 1 boinc boinc    327442 Oct 13 21:12 log.46676269._070893.job.log.tgz.1
[2025-10-13 21:27:56] -rw------- 1 boinc boinc      7778 Oct 13 21:13 heartbeat.json
[2025-10-13 21:27:56] -rw------- 1 boinc boinc       822 Oct 13 21:13 pilotlog.txt
[2025-10-13 21:27:56] -rw------- 1 boinc boinc        97 Oct 13 21:13 pilot_heartbeat.json
[2025-10-13 21:27:56] -rw------- 1 boinc boinc   1213179 Oct 13 21:13 log.46676269._070893.job.log.1
[2025-10-13 21:27:56] -rw------- 1 boinc boinc       357 Oct 13 21:13 output.list
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:13 runtime_log
[2025-10-13 21:27:56] -rw------- 1 boinc boinc   1556480 Oct 13 21:13 result.tar.gz
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc      9161 Oct 13 21:13 runtime_log.err
[2025-10-13 21:27:56] -rw------- 1 boinc boinc       788 Oct 13 21:13 Yp0KDmKe2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmsBTMDmSYZ6nn.diag
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc        27 Oct 13 21:27 wrapper_checkpoint.txt
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc      8192 Oct 13 21:27 boinc_mmap_file
[2025-10-13 21:27:56] -rw-r--r-- 1 boinc boinc     22679 Oct 13 21:27 stderr.txt
[2025-10-13 21:27:56] HITS file was successfully produced:
[2025-10-13 21:27:56] -rw------- 1 boinc boinc 190968677 Oct 13 21:12 shared/HITS.pool.root.1
[2025-10-13 21:27:56]  *** Contents of shared directory: ***
[2025-10-13 21:27:56] total 405864
[2025-10-13 21:27:56] -rw-r--r-- 3 boinc boinc 222477559 Oct 13 16:26 ATLAS.root_0
[2025-10-13 21:27:56] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:26 start_atlas.sh
[2025-10-13 21:27:56] -rw-r--r-- 2 boinc boinc    569674 Oct 13 16:26 input.tar.gz
[2025-10-13 21:27:56] -rw------- 1 boinc boinc 190968677 Oct 13 21:12 HITS.pool.root.1
[2025-10-13 21:27:56] -rw------- 1 boinc boinc   1556480 Oct 13 21:13 result.tar.gz
21:27:57 (1055252): run_atlas exited; CPU time 33429.096684
21:27:57 (1055252): called boinc_finish(0)

</stderr_txt>
]]>

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