Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:42:41 (3682145): wrapper (7.7.26015): starting
17:42:41 (3682145): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 17:42:41] Arguments: --nthreads 4
[2025-10-12 17:42:41] Threads: 4
[2025-10-12 17:42:41] Checking for CVMFS
[2025-10-12 17:42:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:42:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:42:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:42:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:42:41] 2.9.2.0 2039669 4514 98520 151625 1 56 26672327 36864001 0 130560 0 4245821 99.989 278011 1256 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 17:42:41] CVMFS is ok
[2025-10-12 17:42:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:42:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:42:41] Further information can be found at the LHC@home message board.
[2025-10-12 17:42:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:42:41] Checking for apptainer binary...
[2025-10-12 17:42:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:42:41] Running /usr/bin/apptainer --version
[2025-10-12 17:42:41] apptainer version 1.4.1-1.1
[2025-10-12 17:42:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:42:41] thA315a
[2025-10-12 17:42:41] apptainer works
[2025-10-12 17:42:41] Set ATHENA_PROC_NUMBER=4
[2025-10-12 17:42:41] Set ATHENA_CORE_NUMBER=4
[2025-10-12 17:42:41] Starting ATLAS job with PandaID=6839164657
[2025-10-12 17:42:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:54:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:54:59] 2025-10-12 16:53:57,026 | INFO     | all job control threads have been joined
[2025-10-12 18:54:59] 2025-10-12 16:53:57,044 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:57,044 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:57,230 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:57,245 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:57,273 | INFO     | [data] control thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:57,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:54:59] 2025-10-12 16:53:57,398 | INFO     | all payload control threads have been joined
[2025-10-12 18:54:59] 2025-10-12 16:53:57,635 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:57,788 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,016 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,028 | INFO     | [job] control thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,031 | INFO     | [job] validate thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,141 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,308 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,398 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:53:58,404 | INFO     | [payload] control thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:54:01,374 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:54:06,447 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:54:59] 2025-10-12 16:54:07,453 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:54:59] 2025-10-12 16:54:25,806 | INFO     | PID=3685931 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:54:59] 2025-10-12 16:54:25,807 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:54:59] 2025-10-12 16:54:25,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:54:59] 2025-10-12 16:54:25,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:54:59] 2025-10-12 16:54:54,204 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:54:59] 2025-10-12 16:54:54,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512863459136)>', '<ExcThread(monitor, started 140511893497600)>']
[2025-10-12 18:54:59] 2025-10-12 16:54:54,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:54:59] 2025-10-12 16:54:54,957 | INFO     | [monitor] control thread has ended
[2025-10-12 18:54:59] 2025-10-12 16:54:59,379 | INFO     | all workflow threads have been joined
[2025-10-12 18:54:59] 2025-10-12 16:54:59,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:54:59] 2025-10-12 16:54:59,379 | INFO     | traces error code: 0
[2025-10-12 18:54:59] 2025-10-12 16:54:59,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:54:59] 2025-10-12 16:54:59,449 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:54:59] 2025-10-12 16:54:59,452 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:54:59] 2025-10-12 16:54:59,456 [wrapper] pilotpid: 3685931
[2025-10-12 18:54:59] 2025-10-12 16:54:59,459 [wrapper] Pilot exit status: 0
[2025-10-12 18:54:59] 2025-10-12 16:54:59,470 [wrapper] pandaids: 6839164657
[2025-10-12 18:54:59] 2025-10-12 16:54:59,492 [wrapper] cleanup supervisor_pilot 3702247 3685932
[2025-10-12 18:54:59] 2025-10-12 16:54:59,495 [wrapper] Test setup, not cleaning
[2025-10-12 18:54:59] 2025-10-12 16:54:59,499 [wrapper] apfmon messages muted
[2025-10-12 18:54:59] 2025-10-12 16:54:59,503 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:54:59] 2025-10-12 16:54:59,506 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:54:59]  *** Error codes and diagnostics ***
[2025-10-12 18:54:59]     "exeErrorCode": 0,
[2025-10-12 18:54:59]     "exeErrorDiag": "",
[2025-10-12 18:54:59]     "pilotErrorCode": 0,
[2025-10-12 18:54:59]     "pilotErrorDiag": "",
[2025-10-12 18:54:59]  *** Listing of results directory ***
[2025-10-12 18:54:59] total 416432
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:53 queuedata.json
[2025-10-12 18:54:59] -rwx------ 1 boinc boinc     36292 Oct 12 02:54 runpilot2-wrapper.sh
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:54:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:42 run_atlas
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:42 job.xml
[2025-10-12 18:54:59] -rw-r--r-- 2 boinc boinc 222084855 Oct 12 17:42 EVNT.46676267._003116.pool.root.1
[2025-10-12 18:54:59] -rw-r--r-- 2 boinc boinc    569677 Oct 12 17:42 input.tar.gz
[2025-10-12 18:54:59] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:42 start_atlas.sh
[2025-10-12 18:54:59] drwxrwx--x 2 boinc boinc      4096 Oct 12 17:42 shared
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:42 boinc_setup_complete
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc      6371 Oct 12 17:42 init_data.xml
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:42 boinc_lockfile
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc      2550 Oct 12 17:42 pandaJob.out
[2025-10-12 18:54:59] -rw------- 1 boinc boinc    975528 Oct 12 17:42 agis_schedconf.cvmfs.json
[2025-10-12 18:54:59] -rw------- 1 boinc boinc   1560580 Oct 12 17:42 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:54:59] drwx------ 5 boinc boinc      4096 Oct 12 17:42 pilot3
[2025-10-12 18:54:59] -rw------- 1 boinc boinc 198633407 Oct 12 18:53 HITS.46676269._068148.pool.root.1
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc       529 Oct 12 18:53 boinc_task_state.xml
[2025-10-12 18:54:59] -rw------- 1 boinc boinc      1022 Oct 12 18:53 memory_monitor_summary.json
[2025-10-12 18:54:59] -rw------- 1 boinc boinc    273889 Oct 12 18:53 log.46676269._068148.job.log.tgz.1
[2025-10-12 18:54:59] -rw------- 1 boinc boinc      7768 Oct 12 18:53 heartbeat.json
[2025-10-12 18:54:59] -rw------- 1 boinc boinc        95 Oct 12 18:54 pilot_heartbeat.json
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:54 boinc_mmap_file
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc        27 Oct 12 18:54 wrapper_checkpoint.txt
[2025-10-12 18:54:59] -rw------- 1 boinc boinc      4824 Oct 12 18:54 pilotlog.txt
[2025-10-12 18:54:59] -rw------- 1 boinc boinc    634631 Oct 12 18:54 log.46676269._068148.job.log.1
[2025-10-12 18:54:59] -rw------- 1 boinc boinc       357 Oct 12 18:54 output.list
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:54 runtime_log
[2025-10-12 18:54:59] -rw------- 1 boinc boinc    931840 Oct 12 18:54 result.tar.gz
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc      8782 Oct 12 18:54 runtime_log.err
[2025-10-12 18:54:59] -rw------- 1 boinc boinc       659 Oct 12 18:54 81WKDmIXzR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmBuSMDmk6ya1n.diag
[2025-10-12 18:54:59] -rw-r--r-- 1 boinc boinc      6731 Oct 12 18:54 stderr.txt
[2025-10-12 18:54:59] HITS file was successfully produced:
[2025-10-12 18:54:59] -rw------- 1 boinc boinc 198633407 Oct 12 18:53 shared/HITS.pool.root.1
[2025-10-12 18:54:59]  *** Contents of shared directory: ***
[2025-10-12 18:54:59] total 412356
[2025-10-12 18:54:59] -rw-r--r-- 2 boinc boinc 222084855 Oct 12 17:42 ATLAS.root_0
[2025-10-12 18:54:59] -rw-r--r-- 2 boinc boinc    569677 Oct 12 17:42 input.tar.gz
[2025-10-12 18:54:59] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:42 start_atlas.sh
[2025-10-12 18:54:59] -rw------- 1 boinc boinc 198633407 Oct 12 18:53 HITS.pool.root.1
[2025-10-12 18:54:59] -rw------- 1 boinc boinc    931840 Oct 12 18:54 result.tar.gz
18:55:00 (3682145): run_atlas exited; CPU time 16019.136718
18:55:00 (3682145): called boinc_finish(0)

</stderr_txt>
]]>

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