Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:58:47 (3707999): wrapper (7.7.26015): starting
11:58:47 (3707999): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:58:47] Arguments: --nthreads 12
[2025-10-12 11:58:47] Threads: 12
[2025-10-12 11:58:47] Checking for CVMFS
[2025-10-12 11:58:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:58:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:58:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:58:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:58:48] 2.13.2.0 8715 28898 229876 151615 2 188 40212462 46080000 5673 130560 0 194279563 99.887 56027304 21595 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-12 11:58:48] CVMFS is ok
[2025-10-12 11:58:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:58:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:58:48] Further information can be found at the LHC@home message board.
[2025-10-12 11:58:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:58:48] Checking for apptainer binary...
[2025-10-12 11:58:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:58:48] Running /usr/bin/apptainer --version
[2025-10-12 11:58:48] apptainer version 1.4.2-1.el9
[2025-10-12 11:58:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:58:48] mff2104.farm.particle.cz
[2025-10-12 11:58:48] apptainer works
[2025-10-12 11:58:48] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:58:48] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:58:48] Starting ATLAS job with PandaID=6838990468
[2025-10-12 11:58:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:56:16]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:56:16]  storage_token=
[2025-10-12 12:56:16]  surl=/scratch/.boinc/slots/4/PanDA_Pilot-6838990468/log.46676269._066121.job.log.tgz.1
[2025-10-12 12:56:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/7d/log.46676269._066121.job.log.tgz.1
[2025-10-12 12:56:16]  workdir=None
[2025-10-12 12:56:16] ]
[2025-10-12 12:56:16] 2025-10-12 10:55:33,236 | INFO     | transferring file log.46676269._066121.job.log.tgz.1 from /scratch/.boinc/slots/4/PanDA_Pilot-6838990468/log.46676269._066121.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-12 12:56:16] 2025-10-12 10:55:33,237 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/4/PanDA_Pilot-6838990468/log.46676269._066121.job.log.tgz.1 /scratch/.boinc/slots/4/log.46676269._066121.j
[2025-10-12 12:56:16] 2025-10-12 10:55:33,262 | INFO     | adding to output.list: log.46676269._066121.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/7d/log.46676269._066121.job.log.tg
[2025-10-12 12:56:16] 2025-10-12 10:55:33,263 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:56:16] 2025-10-12 10:55:33,263 | INFO     | summary of transferred files:
[2025-10-12 12:56:16] 2025-10-12 10:55:33,263 | INFO     |  -- lfn=log.46676269._066121.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:56:16] 2025-10-12 10:55:33,264 | INFO     | stage-out finished correctly
[2025-10-12 12:56:16] 2025-10-12 10:55:34,062 | INFO     | time since job start (3397s) is within the limit (172800.0s)
[2025-10-12 12:56:16] 2025-10-12 10:55:34,124 | INFO     | monitor loop #250: job 0:6838990468 is in state 'finished'
[2025-10-12 12:56:16] 2025-10-12 10:55:34,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:56:16] 2025-10-12 10:55:36,068 | INFO     | time since job start (3399s) is within the limit (172800.0s)
[2025-10-12 12:56:16] 2025-10-12 10:55:36,628 | INFO     | monitor loop #251: job 0:6838990468 is in state 'finished'
[2025-10-12 12:56:16] 2025-10-12 10:55:36,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:56:16] 2025-10-12 10:55:36,860 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:56:16] 2025-10-12 10:55:38,073 | INFO     | time since job start (3401s) is within the limit (172800.0s)
[2025-10-12 12:56:16] 2025-10-12 10:55:38,108 | INFO     | job 6838990468 has state=finished
[2025-10-12 12:56:16] 2025-10-12 10:55:38,108 | INFO     | preparing for final server update for job 6838990468 in state='finished'
[2025-10-12 12:56:16] 2025-10-12 10:55:38,109 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:56:16] 2025-10-12 10:55:38,109 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:56:16] 2025-10-12 10:55:38,109 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:56:16] 2025-10-12 10:55:38,109 | INFO     | job 6838990468 has finished - writing final server update
[2025-10-12 12:56:16] 2025-10-12 10:55:38,109 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:56:16] 2025-10-12 10:55:38,110 | INFO     | executing command: lscpu
[2025-10-12 12:56:16] 2025-10-12 10:55:38,189 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:56:16] 2025-10-12 10:55:39,130 | INFO     | monitor loop #252: job 0:6838990468 is in state 'finished'
[2025-10-12 12:56:16] 2025-10-12 10:55:39,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:56:16] 2025-10-12 10:55:40,079 | INFO     | time since job start (3403s) is within the limit (172800.0s)
[2025-10-12 12:56:16] 2025-10-12 10:55:41,634 | INFO     | monitor loop #253: job 0:6838990468 is in state 'finished'
[2025-10-12 12:56:16] 2025-10-12 10:55:41,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:56:16] 2025-10-12 10:55:42,084 | INFO     | time since job start (3405s) is within the limit (172800.0s)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,186 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 12:56:16] 2025-10-12 10:55:43,201 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2742.1260104166668
[2025-10-12 12:56:16] 2025-10-12 10:55:43,218 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6838990468/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,219 | INFO     | extracted standard info from prmon json
[2025-10-12 12:56:16] 2025-10-12 10:55:43,219 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:56:16] 2025-10-12 10:55:43,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:56:16] 2025-10-12 10:55:43,220 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:56:16] 2025-10-12 10:55:43,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:56:16] 2025-10-12 10:55:43,221 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:56:16] 2025-10-12 10:55:43,221 | INFO     | sum of square deviations: 36465800.0
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | sum of deviations: 503930455.0000001
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | mean x: 1760264936.0
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | mean y: 2683649.2653061226
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | -- intersect: -24322879210.154373
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | intersect: -24322879210.154373
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | chi2: 0.0009668527977428822
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | -- intersect: -24322879210.154373
[2025-10-12 12:56:16] 2025-10-12 10:55:43,222 | INFO     | current memory leak: 13.82 B/s (using 49 data points, chi2=0.00)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | could have reported an average CPU frequency of 2738 MHz (5 samples)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | ..............................
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . Timing measurements:
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . get job = 0 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . initial setup = 1 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . payload setup = 6 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . stage-in = 0 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . payload execution = 3367 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,223 | INFO     | . stage-out = 0 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,224 | INFO     | . log creation = 0 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,224 | INFO     | ..............................
[2025-10-12 12:56:16] 2025-10-12 10:55:43,314 | INFO     | 
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | job summary report
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | --------------------------------------------------
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | PanDA job id: 6838990468
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | task id: 46676269
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | errors: (none)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:56:16] 2025-10-12 10:55:43,315 | INFO     | pilot state: finished 
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | transexitcode: 0
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | exeerrorcode: 0
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | exeerrordiag: 
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | exitcode: 0
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | exitmsg: OK
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | cpuconsumptiontime: 35371 s
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | nevents: 400
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | neventsw: 0
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | pid: 3719968
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | pgrp: 3719968
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | corecount: 12
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | event service: False
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | sizes: {0: 2348858, 5: 2349120, 11: 2349176, 3378: 2374721, 3379: 2383721, 3383: 2383777, 3389: 2384131}
[2025-10-12 12:56:16] 2025-10-12 10:55:43,316 | INFO     | --------------------------------------------------
[2025-10-12 12:56:16] 2025-10-12 10:55:43,317 | INFO     | 
[2025-10-12 12:56:16] 2025-10-12 10:55:43,317 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-10-12 12:56:16] 2025-10-12 10:55:43,344 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:56:16] 2025-10-12 10:55:43,346 | INFO     | job 6838990468 has completed (purged errors)
[2025-10-12 12:56:16] 2025-10-12 10:55:43,347 | INFO     | overall cleanup function is called
[2025-10-12 12:56:16] 2025-10-12 10:55:44,352 | INFO     | --- collectZombieJob: --- 10, [3719968]
[2025-10-12 12:56:16] 2025-10-12 10:55:44,353 | INFO     | zombie collector waiting for pid 3719968
[2025-10-12 12:56:16] 2025-10-12 10:55:44,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:56:16] 2025-10-12 10:55:44,353 | INFO     | collected zombie processes
[2025-10-12 12:56:16] 2025-10-12 10:55:44,353 | INFO     | will attempt to kill all subprocesses of pid=3719968
[2025-10-12 12:56:16] 2025-10-12 10:55:44,700 | INFO     | process IDs to be killed: [3719968] (in reverse order)
[2025-10-12 12:56:16] 2025-10-12 10:55:44,815 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:56:16] 2025-10-12 10:55:44,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:56:16] 2025-10-12 10:55:44,829 | INFO     | did not find any defunct processes belonging to 3719968
[2025-10-12 12:56:16] 2025-10-12 10:55:44,838 | INFO     | did not find any defunct processes belonging to 3719968
[2025-10-12 12:56:16] 2025-10-12 10:55:44,839 | INFO     | ready for new job
[2025-10-12 12:56:16] 2025-10-12 10:55:44,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:56:16] 2025-10-12 10:55:44,878 | INFO     | ***************************************
[2025-10-12 12:56:16] 2025-10-12 10:55:44,878 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:56:16] 2025-10-12 10:55:44,878 | INFO     | ***************************************
[2025-10-12 12:56:16] 2025-10-12 10:55:44,878 | INFO     | 
[2025-10-12 12:56:16] 2025-10-12 10:55:44,884 | INFO     | architecture information:
[2025-10-12 12:56:16] 2025-10-12 10:55:44,885 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:56:16] 2025-10-12 10:55:44,907 | INFO     | cat /etc/os-release:
[2025-10-12 12:56:16] NAME="CentOS Linux"
[2025-10-12 12:56:16] VERSION="7 (Core)"
[2025-10-12 12:56:16] ID="centos"
[2025-10-12 12:56:16] ID_LIKE="rhel fedora"
[2025-10-12 12:56:16] VERSION_ID="7"
[2025-10-12 12:56:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:56:16] ANSI_COLOR="0;31"
[2025-10-12 12:56:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:56:16] HOME_URL="https://www.centos.org/"
[2025-10-12 12:56:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:56:16] 
[2025-10-12 12:56:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:56:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:56:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:56:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:56:16] 
[2025-10-12 12:56:16] 2025-10-12 10:55:44,907 | INFO     | ***************************************
[2025-10-12 12:56:16] 2025-10-12 10:55:45,410 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-10-12 12:56:16] 2025-10-12 10:55:45,433 | INFO     | sufficient remaining disk space (1681166172160 B)
[2025-10-12 12:56:16] 2025-10-12 10:55:45,433 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:56:16] 2025-10-12 10:55:45,433 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:56:16] 2025-10-12 10:55:45,433 | INFO     | update_server=False
[2025-10-12 12:56:16] 2025-10-12 10:55:45,433 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:56:16] 2025-10-12 10:55:45,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:56:16] 2025-10-12 10:55:45,434 | INFO     | aborting loop
[2025-10-12 12:56:16] 2025-10-12 10:55:45,556 | INFO     | all payload control threads have been joined
[2025-10-12 12:56:16] 2025-10-12 10:55:45,564 | INFO     | all job control threads have been joined
[2025-10-12 12:56:16] 2025-10-12 10:55:46,075 | INFO     | all data control threads have been joined
[2025-10-12 12:56:16] 2025-10-12 10:55:46,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:56:16] 2025-10-12 10:55:46,439 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:46,440 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:46,490 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:46,562 | INFO     | [payload] control thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:46,570 | INFO     | [job] control thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,081 | INFO     | [data] control thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,325 | INFO     | [job] validate thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:56:16] 2025-10-12 10:55:47,503 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,571 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,679 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,771 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:47,912 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:48,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:56:16] 2025-10-12 10:55:48,385 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:49,330 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:51,465 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:55:56,391 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:56:16] 2025-10-12 10:55:57,397 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:56:16] 2025-10-12 10:56:02,603 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:56:16] 2025-10-12 10:56:02,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967973353280)>', '<ExcThread(monitor, started 139967338637056)>']
[2025-10-12 12:56:16] 2025-10-12 10:56:07,945 | INFO     | all workflow threads have been joined
[2025-10-12 12:56:16] 2025-10-12 10:56:07,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:56:16] 2025-10-12 10:56:07,945 | INFO     | traces error code: 0
[2025-10-12 12:56:16] 2025-10-12 10:56:07,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:56:16] 2025-10-12 10:56:15,571 | INFO     | PID=3712897 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:56:16] 2025-10-12 10:56:15,596 | INFO     | .. there are 8 such processes running
[2025-10-12 12:56:16] 2025-10-12 10:56:15,597 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:56:16] 2025-10-12 10:56:15,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:56:16] 2025-10-12 10:56:15,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:56:16] 2025-10-12 10:56:15,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:56:16] 2025-10-12 10:56:15,597 | INFO     | [monitor] control thread has ended
[2025-10-12 12:56:16] 2025-10-12 10:56:15,768 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:56:16] 2025-10-12 10:56:15,772 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:56:16] 2025-10-12 10:56:15,776 [wrapper] pilotpid: 3712897
[2025-10-12 12:56:16] 2025-10-12 10:56:15,779 [wrapper] Pilot exit status: 0
[2025-10-12 12:56:16] 2025-10-12 10:56:15,793 [wrapper] pandaids: 6838990468
[2025-10-12 12:56:16] 2025-10-12 10:56:15,871 [wrapper] cleanup supervisor_pilot 3880635 3712898
[2025-10-12 12:56:16] 2025-10-12 10:56:15,875 [wrapper] Test setup, not cleaning
[2025-10-12 12:56:16] 2025-10-12 10:56:15,879 [wrapper] apfmon messages muted
[2025-10-12 12:56:16] 2025-10-12 10:56:15,883 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:56:16] 2025-10-12 10:56:15,887 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:56:16]  *** Error codes and diagnostics ***
[2025-10-12 12:56:16]     "exeErrorCode": 0,
[2025-10-12 12:56:16]     "exeErrorDiag": "",
[2025-10-12 12:56:16]     "pilotErrorCode": 0,
[2025-10-12 12:56:16]     "pilotErrorDiag": "",
[2025-10-12 12:56:16]  *** Listing of results directory ***
[2025-10-12 12:56:16] total 409780
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc    557409 Oct 12 00:22 pilot3.tar.gz
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc      5112 Oct 12 00:25 queuedata.json
[2025-10-12 12:56:16] -rwx------ 1 boinc boinc     36292 Oct 12 00:26 runpilot2-wrapper.sh
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:56:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:58 run_atlas
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:58 job.xml
[2025-10-12 12:56:16] -rw-r--r-- 2 boinc boinc 219681725 Oct 12 11:58 EVNT.46676267._002658.pool.root.1
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc      6665 Oct 12 11:58 init_data.xml
[2025-10-12 12:56:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:58 start_atlas.sh
[2025-10-12 12:56:16] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:58 shared
[2025-10-12 12:56:16] -rw-r--r-- 2 boinc boinc    569682 Oct 12 11:58 input.tar.gz
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:58 boinc_lockfile
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:58 pandaJob.out
[2025-10-12 12:56:16] -rw------- 1 boinc boinc    975536 Oct 12 11:58 agis_schedconf.cvmfs.json
[2025-10-12 12:56:16] -rw------- 1 boinc boinc   1560580 Oct 12 11:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:56:16] drwx------ 5 boinc boinc      4096 Oct 12 11:58 pilot3
[2025-10-12 12:56:16] -rw------- 1 boinc boinc 194266196 Oct 12 12:54 HITS.46676269._066121.pool.root.1
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc       529 Oct 12 12:55 boinc_task_state.xml
[2025-10-12 12:56:16] -rw------- 1 boinc boinc      1021 Oct 12 12:55 memory_monitor_summary.json
[2025-10-12 12:56:16] -rw------- 1 boinc boinc    368421 Oct 12 12:55 log.46676269._066121.job.log.tgz.1
[2025-10-12 12:56:16] -rw------- 1 boinc boinc      7778 Oct 12 12:55 heartbeat.json
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc      8192 Oct 12 12:56 boinc_mmap_file
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc        27 Oct 12 12:56 wrapper_checkpoint.txt
[2025-10-12 12:56:16] -rw------- 1 boinc boinc        95 Oct 12 12:56 pilot_heartbeat.json
[2025-10-12 12:56:16] -rw------- 1 boinc boinc       822 Oct 12 12:56 pilotlog.txt
[2025-10-12 12:56:16] -rw------- 1 boinc boinc    512018 Oct 12 12:56 log.46676269._066121.job.log.1
[2025-10-12 12:56:16] -rw------- 1 boinc boinc       357 Oct 12 12:56 output.list
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc       620 Oct 12 12:56 runtime_log
[2025-10-12 12:56:16] -rw------- 1 boinc boinc    901120 Oct 12 12:56 result.tar.gz
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc      8764 Oct 12 12:56 runtime_log.err
[2025-10-12 12:56:16] -rw------- 1 boinc boinc       663 Oct 12 12:56 4v8NDmDExR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmSiSMDmWnWP0n.diag
[2025-10-12 12:56:16] -rw-r--r-- 1 boinc boinc     22200 Oct 12 12:56 stderr.txt
[2025-10-12 12:56:16] HITS file was successfully produced:
[2025-10-12 12:56:16] -rw------- 1 boinc boinc 194266196 Oct 12 12:54 shared/HITS.pool.root.1
[2025-10-12 12:56:16]  *** Contents of shared directory: ***
[2025-10-12 12:56:16] total 405716
[2025-10-12 12:56:16] -rw-r--r-- 2 boinc boinc 219681725 Oct 12 11:58 ATLAS.root_0
[2025-10-12 12:56:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:58 start_atlas.sh
[2025-10-12 12:56:16] -rw-r--r-- 2 boinc boinc    569682 Oct 12 11:58 input.tar.gz
[2025-10-12 12:56:16] -rw------- 1 boinc boinc 194266196 Oct 12 12:54 HITS.pool.root.1
[2025-10-12 12:56:16] -rw------- 1 boinc boinc    901120 Oct 12 12:56 result.tar.gz
12:56:17 (3707999): run_atlas exited; CPU time 35426.681760
12:56:17 (3707999): called boinc_finish(0)

</stderr_txt>
]]>

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