Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:06:26 (3348049): wrapper (7.7.26015): starting
16:06:26 (3348049): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 16:06:26] Arguments: --nthreads 6
[2025-10-12 16:06:26] Threads: 6
[2025-10-12 16:06:26] Checking for CVMFS
[2025-10-12 16:06:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:06:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:06:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:06:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:06:27] 2.11.5.0 3651556 3977 73120 151611 3 188 38648299 52428800 1858 130560 0 12287871 99.998 133928 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 16:06:27] CVMFS is ok
[2025-10-12 16:06:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:06:27] Checking for apptainer binary...
[2025-10-12 16:06:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:06:27] Running /usr/bin/apptainer --version
[2025-10-12 16:06:27] apptainer version 1.3.5-1.el9
[2025-10-12 16:06:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:06:27] testio008
[2025-10-12 16:06:27] apptainer works
[2025-10-12 16:06:27] Set ATHENA_PROC_NUMBER=6
[2025-10-12 16:06:27] Set ATHENA_CORE_NUMBER=6
[2025-10-12 16:06:27] Starting ATLAS job with PandaID=6839164617
[2025-10-12 16:06:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:16:49]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:16:49] 2025-10-12 08:15:41,505 | INFO     | monitor loop #332: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:41,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:42,262 | INFO     | PID=3351823 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:16:49] 2025-10-12 08:15:42,262 | INFO     | .. there are 3 such processes running
[2025-10-12 17:16:49] 2025-10-12 08:15:43,262 | INFO     | time since job start (4147s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:44,007 | INFO     | monitor loop #333: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:44,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:45,268 | INFO     | time since job start (4149s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:46,510 | INFO     | monitor loop #334: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:46,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:47,271 | INFO     | time since job start (4151s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:49,013 | INFO     | monitor loop #335: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:49,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:49,276 | INFO     | time since job start (4153s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:51,281 | INFO     | time since job start (4155s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:51,515 | INFO     | monitor loop #336: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:51,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:53,286 | INFO     | time since job start (4157s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:54,017 | INFO     | monitor loop #337: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:54,018 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:55,291 | INFO     | time since job start (4159s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:56,520 | INFO     | monitor loop #338: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:56,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:57,296 | INFO     | time since job start (4161s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:15:59,023 | INFO     | monitor loop #339: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:15:59,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:15:59,301 | INFO     | time since job start (4163s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:16:01,307 | INFO     | time since job start (4165s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:16:01,526 | INFO     | monitor loop #340: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:16:01,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:16:03,312 | INFO     | time since job start (4167s) is within the limit (172800.0s)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,029 | INFO     | monitor loop #341: job 0:6839164617 is in state 'finished'
[2025-10-12 17:16:49] 2025-10-12 08:16:04,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,362 | INFO     | PID=3351823 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:16:49] 2025-10-12 08:16:04,362 | INFO     | .. there are 3 such processes running
[2025-10-12 17:16:49] 2025-10-12 08:16:04,939 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:16:49] 2025-10-12 08:16:04,941 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4100.03525
[2025-10-12 17:16:49] 2025-10-12 08:16:04,942 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839164617/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,943 | INFO     | extracted standard info from prmon json
[2025-10-12 17:16:49] 2025-10-12 08:16:04,943 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:16:49] 2025-10-12 08:16:04,943 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:16:49] 2025-10-12 08:16:04,943 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:16:49] 2025-10-12 08:16:04,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:16:49] 2025-10-12 08:16:04,943 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | sum of deviations: -283888113.50000006
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | mean x: 1760254920.5
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | mean y: 2444460.85
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | -- intersect: 7465406882.476384
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | intersect: 7465406882.476384
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | chi2: 0.02333522931219931
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | -- intersect: 7465406882.476384
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | current memory leak: -4.24 B/s (using 60 data points, chi2=0.02)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | could have reported an average CPU frequency of 4054 MHz (6 samples)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | ..............................
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . Timing measurements:
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . get job = 0 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . initial setup = 5 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . payload setup = 4 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . stage-in = 0 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . payload execution = 4071 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . stage-out = 0 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | . log creation = 0 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,944 | INFO     | ..............................
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | 
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | job summary report
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | --------------------------------------------------
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | PanDA job id: 6839164617
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | task id: 46676269
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | errors: (none)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | pilot state: finished 
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | transexitcode: 0
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | exeerrorcode: 0
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | exeerrordiag: 
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | exitcode: 0
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | exitmsg: OK
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | cpuconsumptiontime: 21817 s
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | nevents: 400
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | neventsw: 0
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | pid: 3358543
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | pgrp: 3358543
[2025-10-12 17:16:49] 2025-10-12 08:16:04,988 | INFO     | corecount: 6
[2025-10-12 17:16:49] 2025-10-12 08:16:04,989 | INFO     | event service: False
[2025-10-12 17:16:49] 2025-10-12 08:16:04,989 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 4079: 2375131, 4081: 2384313, 4156: 2384451}
[2025-10-12 17:16:49] 2025-10-12 08:16:04,989 | INFO     | --------------------------------------------------
[2025-10-12 17:16:49] 2025-10-12 08:16:04,989 | INFO     | 
[2025-10-12 17:16:49] 2025-10-12 08:16:04,989 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | job 6839164617 has completed (purged errors)
[2025-10-12 17:16:49] 2025-10-12 08:16:04,998 | INFO     | overall cleanup function is called
[2025-10-12 17:16:49] 2025-10-12 08:16:06,003 | INFO     | --- collectZombieJob: --- 10, [3358543]
[2025-10-12 17:16:49] 2025-10-12 08:16:06,004 | INFO     | zombie collector waiting for pid 3358543
[2025-10-12 17:16:49] 2025-10-12 08:16:06,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:16:49] 2025-10-12 08:16:06,004 | INFO     | collected zombie processes
[2025-10-12 17:16:49] 2025-10-12 08:16:06,004 | INFO     | will attempt to kill all subprocesses of pid=3358543
[2025-10-12 17:16:49] 2025-10-12 08:16:06,051 | INFO     | process IDs to be killed: [3358543] (in reverse order)
[2025-10-12 17:16:49] 2025-10-12 08:16:06,071 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:16:49] 2025-10-12 08:16:06,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:16:49] 2025-10-12 08:16:06,073 | INFO     | did not find any defunct processes belonging to 3358543
[2025-10-12 17:16:49] 2025-10-12 08:16:06,075 | INFO     | did not find any defunct processes belonging to 3358543
[2025-10-12 17:16:49] 2025-10-12 08:16:06,075 | INFO     | ready for new job
[2025-10-12 17:16:49] 2025-10-12 08:16:06,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:16:49] 2025-10-12 08:16:06,076 | INFO     | ***************************************
[2025-10-12 17:16:49] 2025-10-12 08:16:06,076 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:16:49] 2025-10-12 08:16:06,076 | INFO     | ***************************************
[2025-10-12 17:16:49] 2025-10-12 08:16:06,076 | INFO     | 
[2025-10-12 17:16:49] 2025-10-12 08:16:06,077 | INFO     | architecture information:
[2025-10-12 17:16:49] 2025-10-12 08:16:06,077 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:16:49] 2025-10-12 08:16:06,083 | INFO     | cat /etc/os-release:
[2025-10-12 17:16:49] NAME="CentOS Linux"
[2025-10-12 17:16:49] VERSION="7 (Core)"
[2025-10-12 17:16:49] ID="centos"
[2025-10-12 17:16:49] ID_LIKE="rhel fedora"
[2025-10-12 17:16:49] VERSION_ID="7"
[2025-10-12 17:16:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:16:49] ANSI_COLOR="0;31"
[2025-10-12 17:16:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:16:49] HOME_URL="https://www.centos.org/"
[2025-10-12 17:16:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:16:49] 
[2025-10-12 17:16:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:16:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:16:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:16:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:16:49] 
[2025-10-12 17:16:49] 2025-10-12 08:16:06,083 | INFO     | ***************************************
[2025-10-12 17:16:49] 2025-10-12 08:16:06,586 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-12 17:16:49] 2025-10-12 08:16:06,592 | INFO     | sufficient remaining disk space (281243811840 B)
[2025-10-12 17:16:49] 2025-10-12 08:16:06,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:16:49] 2025-10-12 08:16:06,593 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:16:49] 2025-10-12 08:16:06,593 | INFO     | update_server=False
[2025-10-12 17:16:49] 2025-10-12 08:16:06,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:16:49] 2025-10-12 08:16:06,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:16:49] 2025-10-12 08:16:06,683 | INFO     | all data control threads have been joined
[2025-10-12 17:16:49] 2025-10-12 08:16:06,899 | INFO     | all payload control threads have been joined
[2025-10-12 17:16:49] 2025-10-12 08:16:06,963 | INFO     | all job control threads have been joined
[2025-10-12 17:16:49] 2025-10-12 08:16:07,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:16:49] 2025-10-12 08:16:07,538 | INFO     | aborting loop
[2025-10-12 17:16:49] 2025-10-12 08:16:07,597 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:07,598 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:07,687 | INFO     | [data] control thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:07,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:16:49] 2025-10-12 08:16:07,904 | INFO     | [payload] control thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:07,968 | INFO     | [job] control thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:16:49] 2025-10-12 08:16:08,125 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,539 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,628 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,635 | INFO     | [job] validate thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,645 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,726 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:08,962 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:09,008 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:09,872 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:12,021 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:17,343 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:16:49] 2025-10-12 08:16:18,349 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:16:49] 2025-10-12 08:16:36,456 | INFO     | PID=3351823 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:16:49] 2025-10-12 08:16:36,457 | INFO     | .. there are 3 such processes running
[2025-10-12 17:16:49] 2025-10-12 08:16:36,457 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:16:49] 2025-10-12 08:16:36,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:16:49] 2025-10-12 08:16:36,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:16:49] 2025-10-12 08:16:42,642 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:16:49] 2025-10-12 08:16:44,501 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214966232896)>', '<ExcThread(monitor, started 140214467012352)>']
[2025-10-12 17:16:49] 2025-10-12 08:16:45,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:16:49] 2025-10-12 08:16:45,502 | INFO     | [monitor] control thread has ended
[2025-10-12 17:16:49] 2025-10-12 08:16:49,511 | INFO     | all workflow threads have been joined
[2025-10-12 17:16:49] 2025-10-12 08:16:49,511 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:16:49] 2025-10-12 08:16:49,511 | INFO     | traces error code: 0
[2025-10-12 17:16:49] 2025-10-12 08:16:49,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:16:49] 2025-10-12 08:16:49,572 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:16:49] 2025-10-12 08:16:49,573 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:16:49] 2025-10-12 08:16:49,574 [wrapper] pilotpid: 3351823
[2025-10-12 17:16:49] 2025-10-12 08:16:49,575 [wrapper] Pilot exit status: 0
[2025-10-12 17:16:49] 2025-10-12 08:16:49,578 [wrapper] pandaids: 6839164617
[2025-10-12 17:16:49] 2025-10-12 08:16:49,592 [wrapper] cleanup supervisor_pilot 3414353 3351824
[2025-10-12 17:16:49] 2025-10-12 08:16:49,593 [wrapper] Test setup, not cleaning
[2025-10-12 17:16:49] 2025-10-12 08:16:49,594 [wrapper] apfmon messages muted
[2025-10-12 17:16:49] 2025-10-12 08:16:49,595 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:16:49] 2025-10-12 08:16:49,596 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:16:49]  *** Error codes and diagnostics ***
[2025-10-12 17:16:49]     "exeErrorCode": 0,
[2025-10-12 17:16:49]     "exeErrorDiag": "",
[2025-10-12 17:16:49]     "pilotErrorCode": 0,
[2025-10-12 17:16:49]     "pilotErrorDiag": "",
[2025-10-12 17:16:49]  *** Listing of results directory ***
[2025-10-12 17:16:49] total 417576
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc      5112 Oct 12 09:51 queuedata.json
[2025-10-12 17:16:49] -rwx------. 1 boinc boinc     36292 Oct 12 09:52 runpilot2-wrapper.sh
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc       100 Oct 12 16:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:16:49] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 16:06 run_atlas
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc       105 Oct 12 16:06 job.xml
[2025-10-12 17:16:49] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:06 start_atlas.sh
[2025-10-12 17:16:49] drwxrwx--x. 2 boinc boinc        68 Oct 12 16:06 shared
[2025-10-12 17:16:49] -rw-r--r--. 2 boinc boinc    569678 Oct 12 16:06 input.tar.gz
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc      9509 Oct 12 16:06 init_data.xml
[2025-10-12 17:16:49] -rw-r--r--. 2 boinc boinc 222639657 Oct 12 16:06 EVNT.46676267._003115.pool.root.1
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc         0 Oct 12 16:06 boinc_lockfile
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc      2550 Oct 12 16:06 pandaJob.out
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc    975528 Oct 12 16:06 agis_schedconf.cvmfs.json
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc   1560580 Oct 12 16:06 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:16:49] drwx------. 5 boinc boinc      4096 Oct 12 16:06 pilot3
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc 199230837 Oct 12 17:14 HITS.46676269._068108.pool.root.1
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc       529 Oct 12 17:14 boinc_task_state.xml
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc      1034 Oct 12 17:14 memory_monitor_summary.json
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc    283054 Oct 12 17:14 log.46676269._068108.job.log.tgz.1
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc        95 Oct 12 17:16 pilot_heartbeat.json
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc      7757 Oct 12 17:16 heartbeat.json
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc      8192 Oct 12 17:16 boinc_mmap_file
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc        27 Oct 12 17:16 wrapper_checkpoint.txt
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc      4896 Oct 12 17:16 pilotlog.txt
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc    633625 Oct 12 17:16 log.46676269._068108.job.log.1
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc       357 Oct 12 17:16 output.list
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc       620 Oct 12 17:16 runtime_log
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc    931840 Oct 12 17:16 result.tar.gz
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc      8661 Oct 12 17:16 runtime_log.err
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc       641 Oct 12 17:16 HOuNDm1UzR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJ9hNDmzm8tPm.diag
[2025-10-12 17:16:49] -rw-r--r--. 1 boinc boinc     22004 Oct 12 17:16 stderr.txt
[2025-10-12 17:16:49] HITS file was successfully produced:
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc 199230837 Oct 12 17:14 shared/HITS.pool.root.1
[2025-10-12 17:16:49]  *** Contents of shared directory: ***
[2025-10-12 17:16:49] total 413476
[2025-10-12 17:16:49] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:06 start_atlas.sh
[2025-10-12 17:16:49] -rw-r--r--. 2 boinc boinc    569678 Oct 12 16:06 input.tar.gz
[2025-10-12 17:16:49] -rw-r--r--. 2 boinc boinc 222639657 Oct 12 16:06 ATLAS.root_0
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc 199230837 Oct 12 17:14 HITS.pool.root.1
[2025-10-12 17:16:49] -rw-------. 1 boinc boinc    931840 Oct 12 17:16 result.tar.gz
17:16:50 (3348049): run_atlas exited; CPU time 21845.770577
17:16:50 (3348049): called boinc_finish(0)

</stderr_txt>
]]>

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